BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23060.1
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492558 jgi|Araly1|492558|fgenesh2_kg.7__1991__AT4G23060.1 2399 0.0
> Ahg492558 jgi|Araly1|492558|fgenesh2_kg.7__1991__AT4G23060.1
Length=1665
Score = 2399 bits (1299), Expect = 0.0
Identities = 1519/1626 (93%), Gaps = 11/1626 (1%)
Strand=Plus/Plus
Query 80 AATGGGAAAAGCGTCACGGTGGTTTAGGAGTCTATTCGGAGTTAAGAAACCCGACCCGGG 139
|||||||||||| |||||||||||||||||||| |||||||| || ||||||||| ||||
Sbjct 48 AATGGGAAAAGCTTCACGGTGGTTTAGGAGTCTCTTCGGAGTCAAAAAACCCGACTCGGG 107
Query 140 TTATCCGGATCTATCCGTCGAGACGCCTTCTCGGTCAACTTCCTCTAATCTC-AAACGCC 198
||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 108 TTATCCGGATCCATCCGTCGAGACGCCTTCTCGGTCAACTTCCTCTAATC-CAAAACGCC 166
Query 199 GATGGAGTTTCGTCAAATCCAAACGAGAAAAAGAAAGTACACCGATTAATCAAGTTCCTC 258
||||||||||||||||||||||||| ||||| |||| || | | |||||||||||||
Sbjct 167 GATGGAGTTTCGTCAAATCCAAACGCGAAAAGGAAACCGCAACAACGAATCAAGTTCCTC 226
Query 259 ATACTCCATCGCTACCGAATTCGACGCCTCCACCGCCGTCTCACCACCAATCGTCGCCGA 318
|||||| |||||||| ||| | |||||||| || ||||| |||| ||| ||||| ||||
Sbjct 227 CTACTCCGTCGCTACCTAATACTACGCCTCCTCCTCCGTCGCACCTCCAGTCGTCTCCGA 286
Query 319 GACGACGGAGAAAACAAAAGCCGATGTGGGAGGATGAGGGAAGTGAAGATTCGGACAAGC 378
|||||||||| ||||| |||||||||||||| || |||||| ||||||||||||||||||
Sbjct 287 GACGACGGAGGAAACAGAAGCCGATGTGGGACGACGAGGGAGGTGAAGATTCGGACAAGC 346
Query 379 ATGCTATTGCGGTGGCTGCCGCGACTGCTGCGGTTGCTGAAGCTGCAGTCGCCGCCGCTA 438
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 347 ATGCGATTGCGGTGGCTGCCGCGACTGCTGCGGTTGCTGAAGCTGCCGTCGCCGCCGCTA 406
Query 439 ATGCTGCTGCTGCGGTCGTCAGGCTGACGAGCACAAGTGGGAGGTCGACTCGAAGTCCTG 498
||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||
Sbjct 407 ATGCTGCTGCTGCGGTCGTCAGGCTCACGAGCACGAGCGGGAGGTCGACGCGAAGTCCTG 466
Query 499 TTAAGGCACGGTTTAGCGACGGATTCGACGACGTGGTGGCGCATGGTAGCAAGTTTTATG 558
||||||| ||||||||||| ||||||| |||||||| |||||||| ||||||||||||||
Sbjct 467 TTAAGGCGCGGTTTAGCGATGGATTCGGCGACGTGGCGGCGCATGTTAGCAAGTTTTATG 526
Query 559 GACACGGCCGTGACAGTTGTGAACTTGCGGTGATTAAGATACAATCTATATTTCGCGGAT 618
||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 527 GACACGGCCGTGA-A-----GAACTTGCGGTGATTAAGATACAATCTACATTTCGCGGAT 580
Query 619 ACTTGGCAAAGAGAGCGTTAAGGGCACTCAAGGGTTTGGTTAGGCTTCAAGCGATAGTTA 678
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 ACTTGGCAAAGAGAGCGCTAAGGGCACTCAAGGGTTTGGTTAGGCTTCAAGCGATAGTTA 640
Query 679 GAGGCCATATCGAAAGAAAGAGAATGTCAGTCCATCTGCGCAGGATGCACGCTTTGGTTC 738
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 641 GAGGCCATATCGAAAGAAAGAGAATGTCGGTCCATCTGCGCAGGATGCACGCTTTGGTTC 700
Query 739 GAGCTCAGGCTCGTGTGCGTGCCACTCGGGTTATTGTCACGCCTGAATCTTCTTCTTCTC 798
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 GAGCTCAGGCTCGTGTCCGTGCCACTCGGGTTATTGTCACGCCTGAATCTTCTTCTTCTC 760
Query 799 AATCCAACAATACCAAATCTTCTCACTTCCAAAACCCTGGTCCACCAACTCCGGAAAAAC 858
|||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||
Sbjct 761 AATCCAACAATACCAAGTCTTCTCAATTCCAAAACCCTGGTCCACCGACGCCGGAAAAAC 820
Query 859 TCGAGCATTCGATCTCTTCTCGCAGCTCCAAACTCGCTCATTCTCATCTTTTCAAGAGGA 918
|||||||||| |||||||||||| ||||||| || | ||||||||||||||| |||||||
Sbjct 821 TCGAGCATTCAATCTCTTCTCGCCGCTCCAAGCTTGGTCATTCTCATCTTTTTAAGAGGA 880
Query 919 ATGGTTCGAAGGCAAGCGACAACAACAGACTGTACCCTGCTCACAGGGAGACATTCTCAG 978
||||||| ||||||||||||||||||||||| ||| |||||||||| || ||||| ||||
Sbjct 881 ATGGTTCTAAGGCAAGCGACAACAACAGACTTTACACTGCTCACAGAGAAACATTTTCAG 940
Query 979 CCACAGACGAAGAAGAAAAGATTCTTCAAATCGACAGGAAACACATCAGTTCTTACACAA 1038
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 CCACGGACGAAGAAGAAAAGATTCTTCAAATCGACAGGAAACACATCAGTTCTTACACAA 1000
Query 1039 GACGCAACAGACCAGACATGTTCTACTCATCCCACCTCATCCTAGACAATGCTGGCCTGT 1098
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1001 GACGCAGCAGACCAGACATGTTCTACTCATCCCACCTCATCCTAGACAATGGTGGCCTGT 1060
Query 1099 CTGAACCAGTTTTCGCCACGCCTTTTAGCCCGTCCTCGTCGCATGAAGAGATTACAAGCC 1158
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1061 CTGAACCAGTTTTTGCCACGCCCTTTAGCCCGTCCTCGTCGCATGAAGAGATCACAAGCC 1120
Query 1159 AGTTTTGCACTGCAGAGAACAGTCCTCAGTTATACTCAGCTACTTCTAGAAGCAAACGCA 1218
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1121 AGTTTTGCACTGCAGAGAACAGTCCTCAGTTATACTCTGGTACTTCTAGAAGCAAACGCA 1180
Query 1219 GTGCTTTCACCGCTAGTTCTATAGCACCGAGCGATTGCACAAAAAGCTGCTGTGATGGTG 1278
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1181 GTGCTTTCACTGCTAGTTCTATAGCACCAAGCGATTGCACAAAAAGCTGCTGTGATGGTG 1240
Query 1279 ACCATCCAAGCTACATGGCTTGTACAGAGTCCTCTAGGGCTAAGGCTAGGTCCGCTAGTG 1338
||||||||||||| |||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 1241 ACCATCCAAGCTATATGGCTTGTACAGAGTCCTCTAGGGCTAAGGCCCGGTCTGCAAGTG 1300
Query 1339 CCCCGAAGTCTCGACCACAGTTATTTTACGAGCGGCCTTCATCAAAACGGTTTGGATTTG 1398
|||| ||||||||||||||||||| |||||||||| ||||||| |||||||||| |||||
Sbjct 1301 CCCCAAAGTCTCGACCACAGTTATATTACGAGCGGGCTTCATCGAAACGGTTTGTATTTG 1360
Query 1399 TTGATTTGCCGTACTGTGGTGATACAAAGTCCGGTCCCCAGAAAGGCTCTGCTCTGCATA 1458
| ||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1361 TCGATGTGCCATACTGTGGTGATACAAAGTCAGGTCCCCAAAAAGGCTCTGCTCTGCATA 1420
Query 1459 CTAGTTTTATGAACAAGGCTTATCCCGGTTCAGGTCGGTTGGACCGTCTCGGGATGCCAA 1518
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1421 CTAGTTTTATGAACAAGGCTTATCCCGGTTCAGGTCGGTTGGACCGTCTTGGGATGCCTA 1480
Query 1519 TTGGGTATAGGTACTGAGAA-CGTTGTTGGACCCTTTAACCTGGTTTTGTTGTAGATCAG 1577
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1481 TTGGGTATAGGTACTGAGAAACGTTGTTGGACTAGTTAACCTGGTTTTGTTGTAGATCAG 1540
Query 1578 TGGATTGAGCTTTGCTTCTAATTTTCTTTGTTTGTAGTTTGGAGCTAAGTGGATTTAATC 1637
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1541 TGGATTGAGCTTTGCTGCTAATTTTCTTGGTTTGTAGTTTGGAGCTAAGTGGATTTAATC 1600
Query 1638 TAAAATGCAAATAGAACTTGCTTAATCAAAATGTTTGCATCTCTATAAAGCAT-TGTCAT 1696
||||||||||||||||||||| ||||||||||||||||||||||||||||| | || |||
Sbjct 1601 TAAAATGCAAATAGAACTTGCATAATCAAAATGTTTGCATCTCTATAAAGC-TCTGCCAT 1659
Query 1697 TTGCCT 1702
||||||
Sbjct 1660 TTGCCT 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63839250620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5