BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23070.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492557 jgi|Araly1|492557|fgenesh2_kg.7__1990__AT4G23070.1 1327 0.0
> Ahg492557 jgi|Araly1|492557|fgenesh2_kg.7__1990__AT4G23070.1
Length=957
Score = 1327 bits (718), Expect = 0.0
Identities = 882/959 (92%), Gaps = 19/959 (2%)
Strand=Plus/Plus
Query 1 ATGCTTTCCACAGCAGCAGAGGAAGATCCTGAAGGAGGAAGCAG-AGA-A-ACTAATAAT 57
||||||||||| || || ||||||||||||||||||||||| || ||| | |||||||
Sbjct 1 ATGCTTTCCACGGCGGCTGAGGAAGATCCTGAAGGAGGAAGAAGAAGAGACCCTAATAAC 60
Query 58 GGCGGCGAGACGAC-AC--CG--G--A-C--A--TGCAATGGAGATCGTGGATTATCCCA 105
|||||||||||||| || || | | | | ||| ||||||||||||||| ||||||
Sbjct 61 GGCGGCGAGACGACGACGGCGACGACACCGGACCTGCGATGGAGATCGTGGATAATCCCA 120
Query 106 ATAGTAGTGATTGCTAACGTCGTCGTTTTCGTTGTTGTAATGTACTAT-AATGATTGTCC 164
|||||||||||||| ||||| ||||||||| ||||||||||||||| | |||||||||||
Sbjct 121 ATAGTAGTGATTGCAAACGTAGTCGTTTTCATTGTTGTAATGTACT-TCAATGATTGTCC 179
Query 165 TCACAAAAGCCATCGA-TGTCTTGCAAAGTTCCTCGGACGATTCTCTTTTGAGTCTTTCA 223
|||||||||||||| | ||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 180 TCACAAAAGCCATC-ATTGTCTCGCAAAGTTCCTCGGACGTTTCTCATTTGAGTCTTTCA 238
Query 224 AGTCTAATCCTCTTCTTGGTCCTTCTTCCTCTACGTTGGAGAAAATGGGAGCTTTGGCGT 283
|||| ||||||||||| ||||||||||| || || |||||||||||||||||||||| |
Sbjct 239 AGTCCAATCCTCTTCTAGGTCCTTCTTCTTCAACATTGGAGAAAATGGGAGCTTTGGATT 298
Query 284 GGGGGAAAATAGTTCACAAGCGTCAAGTTTGGAGACTATTAACATGTATGTGGTTGCACG 343
|| ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 299 GGAGGAAAATAGTTCACAAGCGTCAAGTGTGGAGACTCTTTACATGTATGTGGTTGCACG 358
Query 344 CTGGCGTTATTCATTTGTTAGCAAACATGTGTTGTGTTGCCTACATTGGAGTTCGTCTCG 403
|||| |||||||||||| ||||||||||||||||||| |||| |||||||||||||||||
Sbjct 359 CTGGTGTTATTCATTTGCTAGCAAACATGTGTTGTGTCGCCTTCATTGGAGTTCGTCTCG 418
Query 404 AGCAGCAGTTTGGTTTTGTTCGAGTCGGGACGATCTACCTTGTATCGGGTTTCTGTGGGA 463
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 419 AGCAGCAGTTTGGTTTTGTTCGAGTCGGGACGATCTATCTTGTATCGGGTTTCTGCGGGA 478
Query 464 GCATATTATCTTGTTTGTTTCTTGAGGATGCTATATCTGTTGGTGCCTCTAGTGCTTTGT 523
||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||
Sbjct 479 GCATATTATCTTGTTTGTTTCTTCAGAATGCTATATCTGTTGGTGCCTCAAGTGCTTTGT 538
Query 524 TTGGACTCTTAGGAGCAATGTTATCTGAATTGTTAATCAACTGGACAACCTATGACAACA 583
|||| || |||||||||||||||||||||||||||||||| ||||| || |||||||| |
Sbjct 539 TTGGCCTTTTAGGAGCAATGTTATCTGAATTGTTAATCAATTGGACTACTTATGACAATA 598
Query 584 AGGGTGTGGCTATAGTAATGCTTTTGGTGATTGTTGGTGTTAACTTAGGATTAGGAACAC 643
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGGGTGTGGCTTTAGTAATGCTTTTGGTGATTGTTGGTGTTAACTTAGGATTAGGAACAC 658
Query 644 TTCCTCCTGTTGATAATTTTGCTCATATTGGAGGTTTCTTTGGTGGTTTTCTACTCGGTT 703
|||||||||| |||||||||||||| |||||||||||||| || |||||||| |||||||
Sbjct 659 TTCCTCCTGTCGATAATTTTGCTCACATTGGAGGTTTCTTAGGCGGTTTTCTTCTCGGTT 718
Query 704 TTCTTCTCTTGATTCATCCGCAGTTCGAATGGGAAGAAAACCAAGTTTCTCTTATGCCTG 763
||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 719 TTCTTCTCTTGATACATCCGCAGTTCGAATGGGAGGAAAACCGAGTTTCTCTTATGCCTG 778
Query 764 GTACCATTGTTAAACCCAAGTACAACACTTGCCAACTCGTGCTTTGCATAGTTGCATCGA 823
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 779 GTACCATTGTTAAACCGAAGTACAACACTTGCCAACTCGTGCTTTGCATAATTGCATCCA 838
Query 824 TCGTCTTTGTCGCAGGGTTTACTTCTGGATTGGTGATACTATTCAGAGGAGATAGCTTGA 883
|||| |||||||| |||||||||||||| ||||||||| ||||||||||||||| |||||
Sbjct 839 TCGTTTTTGTCGCCGGGTTTACTTCTGGGTTGGTGATATTATTCAGAGGAGATAACTTGA 898
Query 884 ACAGATATTGTAAGTGGTGCCATAAACTAAGCTACTCCTCTAAATCCCAATGGACATGA 942
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACAGATATTGTAAGTGGTGTCATAAACTAAGCTACTCCTCTAAATCCCAATGGACATGA 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5