BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23090.2
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329320 jgi|Araly1|329320|fgenesh1_pm.C_scaffold_7001547 702 0.0
> Ahg329320 jgi|Araly1|329320|fgenesh1_pm.C_scaffold_7001547
Length=552
Score = 702 bits (380), Expect = 0.0
Identities = 497/553 (90%), Gaps = 9/553 (2%)
Strand=Plus/Plus
Query 73 ATGAGCGAGAACTCTTCGATTACAGTGGATCAGCCAACAACAGAAAATGGTAATGGCCAA 132
||||||||||||||||||||||| |||||||||||||||| | ||||||||| || || |
Sbjct 1 ATGAGCGAGAACTCTTCGATTACCGTGGATCAGCCAACAAGACAAAATGGTATTGTCCGA 60
Query 133 GGAGAGCAGGTGATTCAATTGGGTAATATGCCGCCTCCTCTGTCACCACCCACCGCACGC 192
|||| ||||||||||| ||||| ||||||| || |||||||||||||||||| ||||||
Sbjct 61 GGAGGGCAGGTGATTCCATTGGCTAATATG-CG--TCCTCTGTCACCACCCACTGCACGC 117
Query 193 AGAATCCTAGTGATCCCGCATGGAGCCGAAATTGTCAGTGTACTGGCATATATTTCTAGG 252
|||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||| |
Sbjct 118 AGAATCATAGTGATCCCGAATCGAGCCGACATTGTCAGTGTACTGGCATATATTTCTA-G 176
Query 253 GCT-TCTCGTCAGGCAGTCTACATCTTGTCAGGGAGGGGATGCGTTTCACGAGCCAACTT 311
| | ||||||||||||||||||||||||||||||||||||| |||||||| |||| |||
Sbjct 177 GATCTCTCGTCAGGCAGTCTACATCTTGTCAGGGAGGGGATACGTTTCACAAGCCTCCTT 236
Query 312 GGTGTCGTTACCAATCC-GAGGAAACCGCATGGGTATTGGGAGAATACTTTACTTGAGTG 370
| | ||||||||| ||| ||| ||||||||||||| ||||| || |||||||||||||
Sbjct 237 GTTATCGTTACCA-TCCCGAGAAAACCGCATGGGTCGTGGGATTATTCTTTACTTGAGTG 295
Query 371 GATGGTTCCAACCGATGCTCACTGATGTAGGTGTTGCTGTACATTCTAGTCGTCCCAACG 430
|||||||||||||||||||||| ||||||||| |||||||||| |||||||| |||||||
Sbjct 296 GATGGTTCCAACCGATGCTCACAGATGTAGGTCTTGCTGTACAATCTAGTCGCCCCAACG 355
Query 431 GAATACTTCACGTCTCCCTTTCAGGTGTTTCACCAAGTGTTGCTATTGCATATCAACTTT 490
||||||| || |||||||||||||||||||||| |||||||||||| ||| |||| |||
Sbjct 356 GAATACTCCATGTCTCCCTTTCAGGTGTTTCACAAAGTGTTGCTATAGCAAATCAGCTTA 415
Query 491 TTGCTTTCGGAGATGTTGAGGTGGATGttttttttGTTTGCGGACCGGGGTCAATATTTC 550
||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 416 TTGCTTTCGGAGATGTTGAGGTGGATGTTATTTTTGTTTGCGGACCGGGGACATTATTT- 474
Query 551 AACC-GGATGCACCAGGTGCACCGAGAGAACGGGTACGAGTTAATGGAGTAGCATTAGCA 609
| || |||||||||||||| |||||||||||||||||||||||||| |||| || |||||
Sbjct 475 ACCCCGGATGCACCAGGTGGACCGAGAGAACGGGTACGAGTTAATGCAGTACCAGTAGCA 534
Query 610 CAAGCACCTGCTG 622
|||||||| ||||
Sbjct 535 CAAGCACCCGCTG 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22949996034
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5