BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23100.1
Length=2055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492552 jgi|Araly1|492552|fgenesh2_kg.7__1985__AT4G23100.1 2979 0.0
Ahg896301 jgi|Araly1|896301|Al_scaffold_0005_267 787 0.0
> Ahg492552 jgi|Araly1|492552|fgenesh2_kg.7__1985__AT4G23100.1
Length=1864
Score = 2979 bits (1613), Expect = 0.0
Identities = 1800/1886 (95%), Gaps = 29/1886 (2%)
Strand=Plus/Plus
Query 1 AGCTCCACTGATCGGCTCATGCTCCACTGATCAACTTTCTTTCAtttttttATC-AGTTT 59
||||| ||||||||||||||||| | || || |||||| ||||||||| | |||
Sbjct 1 AGCTCAACTGATCGGCTCATGCT---C---TC-AC--TCTTTC--TTTTTTATCAATTTT 49
Query 60 CTCATTTCTCTCTCAGTCGCATATAAATTTGAAA-CGCCGATTCGTTTTTGCTCTTTAAG 118
|||| || ||||||||||||||||||| |||||| ||||||||||||||||||| |||||
Sbjct 50 CTCA-TT-TCTCTCAGTCGCATATAAA-TTGAAACCGCCGATTCGTTTTTGCTC-TTAAG 105
Query 119 C--T-TTCTTCTTGATTTCGACGGTGTCTCTCAATCTCCGTCAAGCTTGACGAATTTCAG 175
| | |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 106 CTTTCTTCTTCTTTATTTCGACGGTGTCTCTCAATCTCCGTCAAGGTTGACGACTTTCAG 165
Query 176 GAGCTATATATACCATGGCGCTCTTGTCTCAAGCAGGAGGATCATACACTGTTGTTCCTT 235
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 166 GAGCTATATAGACCATGGCGCTCTTGTCACAAGCAGGAGGATCATACACTGTTGTCCCTT 225
Query 236 CTGGAGTTTGTTCAAAGGCTGGAACTAAAGCTGTTGTTTCGGGTGGCGTGAGGAATTTGG 295
||| | ||||||||| ||||||||||||| ||||| ||||| |||||||||||||
Sbjct 226 -TGG-G-ATGTTCAAAGACTGGAACTAAAGC---AGTTTCTGGTGGTGTGAGGAATTTGG 279
Query 296 ATGTTTTGAGGATGAAAGAAGCTTTTGGTAGCTCCTACTCTAGGAGTCTATCTACCAAAT 355
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 280 ATGTGTTGAGGATGAAAGAAGCTTTTGTTAGCTCCTACTCTAGGAGTCTATCTACAAAAT 339
Query 356 CAATGCTTCTCCATTCTGTTAAGAGGAGTAAGAGAGGGCATCAATTGATTGTTGCGGCAA 415
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 340 CAATGCTTCTCCATTCTGTTAAGAGGAGCAAGAGAGGGCATCAATTGATTGTTGCGGCTA 399
Query 416 GTCCTCCAACGGAAGAGGCTGTAGTTGCAACTGAGCCGTTGACGAGAGAGGATCTCATTG 475
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 400 GCCCGCCAACGGAAGAGGCTGTAGTTGCTACTGAGCCGTTGACGAGAGAGGATCTCATTG 459
Query 476 CCTATCTTGCCTCTGGATGCAAAACAAAGGACAAATATAGAATAGGTACAGAACATGAGA 535
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 460 CGTATCTTGCCTCTGGATGCAAAACTAAGGACAAATATAGAATAGGTACAGAACATGAGA 519
Query 536 AATTTGGTTTTGAGGTCAATACTTTGCGCCCTATGAAGTATGATCAAATAGCCGAGCTTC 595
|||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |
Sbjct 520 AATTTGGTTTTGAGGTCAATACTTTGCGTCCTATGAAGTATGAGCAAATAGCTGAGCTGC 579
Query 596 TTAATGGTATCGCTGAAAGATTTGAATGGGAAAAAGTAATGGAAGGTGACAAGATCATTG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TTAATGGTATCGCTGAAAGATTTGAATGGGAAAAAGTAATGGAAGGTGACAAGATCATTG 639
Query 656 GTCTGAAGCAGGGAAAGCAAAGCATTTCACTTGAACCTGGGGGTCAGTTCGAGCTTAGTG 715
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 640 GTCTGAAGCAGGGAAAGCAAAGCATTTCACTGGAACCTGGGGGTCAATTCGAGCTTAGTG 699
Query 716 GTGCACCTCTTGAGACTTTGCATCAAACTTGTGCTGAAGTCAATTCACATCTTTATCAGG 775
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 700 GTGCACCTCTTGAGACTTTGCACCAAACTTGTGCTGAAGTCAATTCACATCTTTATCAGG 759
Query 776 TAAAAGCAGTTGCTGAGGAAATGGGAATTGGTTTCTTAGGAATTGGCTTCCAGCCCAAAT 835
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 760 TAAAAGCTGTTGCTGAGGAAATGGGAATTGGTTTCTTAGGAATCGGCTTCCAGCCCAAAT 819
Query 836 GGCGTCGGGAGGATATACCCATCATGCCAAAGGGGAGATACGACATTATGAGAAACTACA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 GGCGTCGGGAGGATATACCCATCATGCCAAAGGGGAGATACGACATTATGAGAAACTACA 879
Query 896 TGCCGAAAGTTGGTACCCTTGGTCTTGATATGATGCTCCGAACGTGTACTGTTCAGGTTA 955
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 880 TGCCGAAAGTTGGCACCCTTGGACTTGATATGATGCTCCGAACGTGTACTGTTCAGGTTA 939
Query 956 ATCTGGATTTTAGCTCAGAAGCTGATATGATCAGGAAGTTTCGTGCTGGTCTTGCTTTAC 1015
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 940 ATCTGGATTTTAGCACAGAAGCTGATATGATCAGGAAGTTCCGTGCTGGTCTTGCTTTGC 999
Query 1016 AACCTATAGCAACGGCTCTATTTGCGAATTCCCCTTTTACAGAAGGAAAGCCAAACGGAT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 AACCTATAGCAACGGCTCTATTTGCGAATTCCCCTTTTACAGAAGGAAAGCCAAACGGAT 1059
Query 1076 TTCTCAGCATGAGAAGCCACATATGGACAGACACTGACAAGGACCGCACAGGAATGCTAC 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 TTCTCAGCATGAGAAGCCACATATGGACAGACACTGACAAGGACCGCACAGGAATGCTAC 1119
Query 1136 CATTTGTTTTCGATGACTCTTTTGGGTTTGAGCAGTATGTTGACTACGCACTCGATGTCC 1195
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 CGTTTGTTTTCGATGACTCTTTTGGGTTTGAGCAGTATGTTGACTACGCACTCGATGTCC 1179
Query 1196 CTATGTACTTTGCCTACAGAAAGAACAAATACATCGACTGTACTGGAATGACATTTCGGC 1255
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1180 CTATGTACTTTGCCTACCGAAAGAACAAATACATCGACTGTACTGGAATGACATTTAGGC 1239
Query 1256 AATTCTTGGCTGGAAAACTTCCCTGTCTCCCTGGTGAACTGCCTTCATATAATGATTGGG 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1240 AATTCTTGGCTGGAAAACTTCCCTGTCTCCCTGGTGAACTGCCTTCATATAACGATTGGG 1299
Query 1316 AAAACCATCTGACAACAATATTCCCAGAGGTTCGGTTGAAGAGATACTTGGAGATGAGAG 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 AAAACCATCTGACAACAATATTCCCAGAGGTTCGGTTGAAGAGATACTTGGAGATGAGAG 1359
Query 1376 GTGCTGATGGAGGTCCCTGGAGGAGGCTGTGTGCCCTGCCAGCTTTCTGGGTGGGTTTAT 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 GTGCTGATGGAGGTCCCTGGAGGAGGCTGTGTGCCCTGCCAGCTTTCTGGGTGGGTTTAT 1419
Query 1436 TATATGATGATGATAGTCTCCAAGCTATCCTGGATCTGACAGCTGACTGGACTCCAGCAG 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 TATATGATGATGATAGTCTCCAAGCTATCCTGGATCTGACAGCTGACTGGACTCCAGCAG 1479
Query 1496 AGAGAGAGATGCTAAGGAACAAAGTCCCAGTTACTGGCTTAAAGACTCCTTTTAGGGATG 1555
||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||
Sbjct 1480 AGAGAGAGATGCTAAGGAACAAAGTTCCAGTTACTGGCTTAAAGACGCCGTTTAGAGATG 1539
Query 1556 GTTTGTTAAAGCATGTCGCTGAAGATGTCCTGAAACTCGCAAAGGATGGTTTAGAGCGCA 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 GTTTGTTAAAGCATGTCGCTGAAGATGTCCTGAAACTCGCAAAGGATGGTTTAGAGCGCA 1599
Query 1616 GAGGCTACAAGGAAGCCGGTTTCTTGAACGCAGTCGATGAAGTGGTCAGAACAGGAGTTA 1675
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1600 GAGGCTACAAGGAAGCCGGTTTCTTGAACGCAGTTGATGAAGTGGTCAGGACAGGAGTTA 1659
Query 1676 CGCCTGCGGAGAAGCTCTTGGAGATGTACAATGGAGAATGGGGACAAAGCGTAGATCCCG 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 CGCCTGCGGAGAAGCTCTTGGAGATGTACAATGGAGAATGGGGACAAAGCGTAGATCCCG 1719
Query 1736 TGTTCGAAGAGCTGCTGTACTAAGAAAATGGGACGTGAACAAAAGGTGTCTATAAACCTT 1795
|||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1720 TGTTCGAAGAACTGCTATACTAAGAGAATGGGAAGTGAACAAAAGGTGTCTATAAACCTT 1779
Query 1796 TGGGTGTGAGTTTATGCTATCTGAAGAATTCGAGTCTCCGGAATAAGGAttttttttt-t 1854
|||||||||||| ||||||||||||||| || |||||| |||||||| ||||||||| |
Sbjct 1780 TGGGTGTGAGTTGATGCTATCTGAAGAACTCAAGTCTCAGGAATAAGTTTTTTTTTTTCT 1839
Query 1855 tGT-TGTAATCGGATTTTAAAAACTG 1879
| | ||||||||||||||||||||||
Sbjct 1840 T-TCTGTAATCGGATTTTAAAAACTG 1864
> Ahg896301 jgi|Araly1|896301|Al_scaffold_0005_267
Length=1347
Score = 787 bits (426), Expect = 0.0
Identities = 1045/1337 (78%), Gaps = 70/1337 (5%)
Strand=Plus/Plus
Query 455 TGACGAGAGAGGATCTCATTGCCTATCTTGCCTCTGGATGCAAAACAAAGGACAAATAT- 513
|||| | ||| ||||| ||||||||| |||| |||||||||||| |||||| |||| |
Sbjct 44 TGACCAAAGAAGATCTGATTGCCTATTTTGCTTCTGGATGCAAACCAAAGG--AAATGTG 101
Query 514 -AGAATAGGTACAGAACATGAGAAATTTGGTTTTGAGGTCAATACTTTGCGCCCTATGAA 572
|||||||| |||||||||||||||||| |||| |||||||| |||||||||||||| ||
Sbjct 102 GAGAATAGGCACAGAACATGAGAAATTTTGTTTCGAGGTCAAGACTTTGCGCCCTATAAA 161
Query 573 GTATGATCAAATAGCCG-AGCTTCTTAATGGTATCGCTGAAAGATTTGAATGGGAAAAAG 631
| ||| |||||| | | | || ||||||||||| || || |||| ||| ||||| || |
Sbjct 162 ATTTGAACAAATAACTGCA-CTGCTTAATGGTATTGCCGAGAGATATGATTGGGATAAGG 220
Query 632 TAATGGAAG-GTGACAAG-ATCATTGGTCTGAAGCAGGGAAAGC-AAAGCATTTCACTTG 688
| |||| || || ||| ||||||||| |||| || || |||| ||||||||||||| |
Sbjct 221 TGATGG-AGAAAGA-AAGAATCATTGGTTTGAAACAAGG-AAGCAAAAGCATTTCACTAG 277
Query 689 AACCTGGGGGTCAGTTCGAGCTTAGTGGTGCACCTCTTGAGACTTTGCATCAAACTTGTG 748
|||| || || || | ||||| ||||| |||||||| ||||| |||| ||||||||||
Sbjct 278 AACCAGGAGGCCAACTAGAGCTAAGTGGGGCACCTCTAGAGACGCTGCACCAAACTTGTG 337
Query 749 CTGAAG-TCAATTCACATCTTTATCAGGT-AAAAGCAGTTGCTGAGGAAATGGGAATTGG 806
|| || || ||||||||| | || || |||| | |||||||| ||| ||| ||||||
Sbjct 338 ATG-AGATCCGTTCACATCTCCACCAAGTGAAAA-CTGTTGCTGAAGAATTGGAAATTGG 395
Query 807 TTTCTTAGGAATTGGCT-TCCAGCCCAAATGGC--GTCGGGAGGATATACCCATCATGCC 863
||||||||||||||||| | | |||||| || ||| |||||| || |||| ||||
Sbjct 396 TTTCTTAGGAATTGGCTAT-GAACCCAAA--GCTAGTCTCGAGGATGTAACCATTGTGCC 452
Query 864 AAAGGGGAGATACGACATTATGAGAAACTACAT-GCCGAAAGTTGGTACC-C-T-TGGTC 919
||| | || | ||| |||| | | || || | ||| || | ||| | | || |
Sbjct 453 CAAGAGAAGGTTTGACTTTATAACAGACCACTTAGCC---AG-AGCCACCACATCAGGAC 508
Query 920 TTGATATGATGCTCCGAACGTGTACTGTTCAGGTTAATCTGGATTTTAGCTCAGAAGCTG 979
||| ||||| || ||||||||||||||||||| ||||| || | |||||||||| | |
Sbjct 509 CTGACGTGATGTTCAGAACGTGTACTGTTCAGGTCAATCTAGACTATAGCTCAGAAACCG 568
Query 980 ATATGATCAGGAAGTTTCGTGCTGGTCTTGCTTTACAACCTATAGCAACGGCTCTATTTG 1039
||||||||||||||||||| ||| |||| ||||| |||||||| || || ||| |||| |
Sbjct 569 ATATGATCAGGAAGTTTCGCGCTAGTCTAGCTTTGCAACCTATCGCTACAGCTATATTCG 628
Query 1040 CGAATTCCCCTTTTACAG-AA-GGAAAGCCAAACGGATTTCTCAGCATGAGAAGCCA-CA 1096
| |||||||||||| || || ||||| ||||| || ||| | ||| |||| || || |
Sbjct 629 CAAATTCCCCTTTT--AGTAATGGAAAACCAAATGGGTTTTTGAGCGTGAGGAGTCAGC- 685
Query 1097 TATGGACAGACACTGACAAGGACCGCACAGGAATGCTACCATTTGTTTTCGATGACTCTT 1156
||| ||||| |||| ||| |||||||||| ||| |||| ||||||||||||||||| |
Sbjct 686 TATATACAGATTCTGATAAGAACCGCACAGGGATGATACCTTTTGTTTTCGATGACTCAT 745
Query 1157 TTGGGTTTGAGCAGTATGTTGACTACGCACTCGATGTCCCTATGTACTT-TGCCTACAGA 1215
|||||||||||| |||||| || |||||||| ||| | || |||| || | | | ||
Sbjct 746 TTGGGTTTGAGCGGTATGTCGAATACGCACTTGATATTCCAATGTTGTTCTTATTTC-GA 804
Query 1216 AA-GAACAAATA-CATCGACTGTACTGGAATGACATTTCGGCAATTCTTG-GCTGGAAAA 1272
|| ||| | || | |||||||| ||||||||||||||| | ||| || | ||||||
Sbjct 805 AACGAA-AGCTATC-TCGACTGTGGAGGAATGACATTTCGGGATTTCATGTCCGGGAAAA 862
Query 1273 CTTCCCTGTCTCCCTGGTGAACTGCCT-TCATATAATGATTGGGAAAACCATCTGA-CAA 1330
||| | |||| || ||||| ||| ||| ||| || |||||| ||| | | |
Sbjct 863 TTTCTC-ATCTCTCTAATGAACAACCTAACAT-TAAGGACTGGGAACTTCAT-TTAGGAG 919
Query 1331 CAATAT-TCCCAGAGGTTCGGTTGAAGAGATACTTGGAGATGAGAGGTGCTGATGGAGGT 1389
|||||| | |||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 920 CAATATAT-CCAGAGGTCCGACTAAAGAGATACTTGGAGATGAGAGGTGCTGATGGAGGT 978
Query 1390 CCCT-GGAGGAGGCTGTGTGCCCTGCCAGCTTTCTGGGTGGGTTTATTATATGATGATGA 1448
|||| ||| | | | |||||||| |||||||||||||||||||| |||| ||||| ||
Sbjct 979 CCCTTGGAC-ATGTTATGTGCCCTACCAGCTTTCTGGGTGGGTTTGCTATACGATGAGGA 1037
Query 1449 -TAGTCTCCAAGCTATCCTGGATCTGA-CAGCTGACTGGACTCCAGCAGAGAGAGAGATG 1506
| ||||||| || | || ||| ||| | | ||| |||||||| | ||| || ||||||
Sbjct 1038 CTC-TCTCCAAACTGTTCTCGATATGATC-GATGATTGGACTCCTGAAGAAAGGGAGATG 1095
Query 1507 CTAAGGAA-CAAAGTCCCAGTTACTGGCTTAAAGACTCCT-TTTAGGGAT-GGTTTGTTA 1563
|| |||| ||| || ||| | |||||| ||||||| | ||||| ||| || | |||
Sbjct 1096 CTTAGGACTCAA-GTTCCAATCACTGGCCTAAAGACAA-TGTTTAGAGATAGGCCT-TTA 1152
Query 1564 AAGCATGTCGCTGAAGATGTCCTGAAA-CTCGCAAAGGATGGTTTAGAGCG-CAGAGGCT 1621
|| ||||| || ||||||||||| ||| || |||||||||||||| ||||| | |||| |
Sbjct 1153 AAACATGTAGCAGAAGATGTCCT-AAAGCTTGCAAAGGATGGTTTGGAGCGTC-GAGGGT 1210
Query 1622 ACAAGGAAGCCGGTTTCTTGAACGCAGTCGATGAAGTGGTCAGAACAGGAGTTACGCCTG 1681
|||| ||| ||||||||||||| || ||| || ||||| ||||||| ||||||||||
Sbjct 1211 ACAATGAAACCGGTTTCTTGAAAGCTCTCGCCGAGGTGGTTGGAACAGGGGTTACGCCTG 1270
Query 1682 CGGAGAAGCTCTTGGAGAT-GTACAATGGAGAATGGGGACAAAGCGTAGATCCCGTGTTC 1740
| ||||||||||||||| | |||||||||||| |||||||||| | ||||| | ||||||
Sbjct 1271 CAGAGAAGCTCTTGGAG-TCGTACAATGGAGACTGGGGACAAAACATAGATTCTGTGTTC 1329
Query 1741 GAAG-AGCTGCTGTACT 1756
| | | |||| |||||
Sbjct 1330 CAGGGA-CTGCGGTACT 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77285107105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5