BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G23110.1

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945803 jgi|Araly1|945803|scaffold_702032.1                        433    1e-120


> Ahg945803 jgi|Araly1|945803|scaffold_702032.1
Length=518

 Score =  433 bits (234),  Expect = 1e-120
 Identities = 436/526 (83%), Gaps = 44/526 (8%)
 Strand=Plus/Plus

Query  65   TCTTTCAGGTTTGCAAGTTCCAAATGGGGAAAAAATCTAAGCCGTTTATATTATCATCAG  124
            ||||||||||||||||||| | |||| |||| |||||| ||||||  | ||||||| |||
Sbjct  1    TCTTTCAGGTTTGCAAGTT-C-AATGAGGAACAAATCTCAGCCGTCAAGATTATCACCAG  58

Query  125  ATGCA-CCTAAGCCCCCT-CATAGGCAGCCTTACAAAGCTCTTCTGATAAGCGCTCAGTC  182
            ||| |  ||   |||| | |  | |||||||| ||||||||||| |||||| | ||||||
Sbjct  59   ATG-AGGCTTCTCCCCTTCCCCA-GCAGCCTTGCAAAGCTCTTCCGATAAGAGGTCAGTC  116

Query  183  ATCTAAAGTGAATTCAAC-AGATGGTGAAGCAACTGGTTCGCAAATGAAGCCG-CGGAAA  240
            |||||||||||| || || |||||||||||||||||||||||||||||||||| || |||
Sbjct  117  ATCTAAAGTGAAGTC-ACGAGATGGTGAAGCAACTGGTTCGCAAATGAAGCCGTCGAAAA  175

Query  241  CAAAGAAAAGCCCCTTACAAAGCTCTTCTCATTAGAGCTCGATCACCAGGACT-AAGTGA  299
            |  |||||||||||||||||||||||||||||||||||||| ||||||  | | ||||||
Sbjct  176  C-CAGAAAAGCCCCTTACAAAGCTCTTCTCATTAGAGCTCGGTCACCAC-ATTCAAGTGA  233

Query  300  GGAA-AGCTCTTCGGAGAGTGA--CTT--T----T-------CCTATGAAGCGGATTGTG  343
             ||| |  || |||||||||||  |||  |    |       |||||||||||||| |||
Sbjct  234  CGAATAT-TCATCGGAGAGTGAATCTTCGTCCGATGAATTTTCCTATGAAGCGGATGGTG  292

Query  344  AAGCATCCGATTCATCATCAGCGGAGAGTGAAGCAACCAATATGAAGCCGATGAAGAACA  403
            ||||||||||||||||||||||||| ||||| |||||| || ||||||||||||||||||
Sbjct  293  AAGCATCCGATTCATCATCAGCGGATAGTGATGCAACCGATGTGAAGCCGATGAAGAACA  352

Query  404  AAACTGCGAGAAAAGCTCCA-----G-AAG--CGAG--GCTAGCA-G-ACA---AAGAGC  448
            ||||||||||||||||||||     | |||  | ||  ||  | | | | |   ||||||
Sbjct  353  AAACTGCGAGAAAAGCTCCAATATCGCAAGAACCAGAAGCGGGGATGGAAATCGAAGAGC  412

Query  449  AAAACAAGAGGAGAAGGATCTCAGAGAAGAACAATAATCCTGAAGAAACCATGTCCTGGG  508
             |||||||||||||||||||||||||||| || || || ||||||| |||||||||||||
Sbjct  413  CAAACAAGAGGAGAAGGATCTCAGAGAAGGACGATGATTCTGAAGATACCATGTCCTGGG  472

Query  509  AACCAGAAGTTAAAAAGACTCTTTGAAAGAAGATTTCGACAGAAGA  554
            ||||||||||||| ||||||| ||||||||| ||||||||||||||
Sbjct  473  AACCAGAAGTTAAGAAGACTCCTTGAAAGAAAATTTCGACAGAAGA  518



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26266689813


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5