BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23120.1
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329317 jgi|Araly1|329317|fgenesh1_pm.C_scaffold_7001544 857 0.0
> Ahg329317 jgi|Araly1|329317|fgenesh1_pm.C_scaffold_7001544
Length=1020
Score = 857 bits (464), Expect = 0.0
Identities = 540/577 (94%), Gaps = 3/577 (1%)
Strand=Plus/Plus
Query 509 AGAA-GCTTAGGAAGCTCACTTTTAATGGCTTTGACTTGCAGCAAAAGCGTGAAATAGAT 567
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGAATGCTTAGGAAGTTCACTTTTAATGGCTTTGACTTGCAGCAAAAGCGTGAAATAGAT 504
Query 568 CATTTTGTGGAAAAGACAATTTTGCGAATAGGCCATCTTCGTGACATTGTGAAGGAGCAA 627
||| ||||||||||||| ||||||||| | |||||||||| |||||||||||||||||||
Sbjct 505 CATCTTGTGGAAAAGACGATTTTGCGAGTTGGCCATCTTCCTGACATTGTGAAGGAGCAA 564
Query 628 AAGACTTTGATCTCGAGGAGTAAAAGAACTGTTCCTCAAAGCTATATTATAAAAGCGGTG 687
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 565 AAGACTTTGATCTCGAGGAGTAAACGATCTGTTCCTCAAAGCTATATTATAAAAGCGGTG 624
Query 688 GAAACAAGTCGTGAAAGCAATAATGTGGTTAACTCCATCTTGGAAAGTTTTGATTTGTTG 747
|||||||||| |||||||||||||| ||||||||| |||||||||| |||||||||||||
Sbjct 625 GAAACAAGTCATGAAAGCAATAATGGGGTTAACTCGATCTTGGAAAATTTTGATTTGTTG 684
Query 748 ACCGGTGATTCGGATCGTGACAAGAGTTTGGAGGAGCTTCTGGAAGTAGTTAAGCCCAAG 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 685 ACCGGTGATTCGGATCGTGACAAGAGTTTGGAGGAGCTTCTGGAAGTAGTTAAGCCCC-G 743
Query 808 T-GTCGTACAAGTAGAAAGAAGCAAGCTGGTGATTATGATTCTTTCTGGCCAAATGATGT 866
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 TTGTCGTACAAGTAAAAAGAAGCAAGCTGGTGATTATGATTCTTTCTGGCCAAATGATGT 803
Query 867 TGTTTCGGTGGTGAGTGCTCTTGAGCAGGCTTTATATGATTCTTTGAAAGACGATATAGC 926
|||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||| |
Sbjct 804 TGTTTCAGTGGTGAGTGCTCTAGAGCAAGCTTTATATGATTCTTTGAAAGAAGATATATC 863
Query 927 AAAGTATAGTAACAAGGTGGAGATTCTGGTTGGTAAACTCAAGCGTGGTTTCACTTTTGA 986
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 AAAGTATAGTAACAAGTTGGAGATTCTGGTTGGTAAACTCAAGCGTGGTTTCACTTTTGA 923
Query 987 TGAATTAAAGGTTGATTTGGAGGAACCAATATTGAAGGATGATGCTTCTTCATCCATCTC 1046
||||||||||| || ||||| |||||||||||| |||| |||| ||| ||||||| |||
Sbjct 924 TGAATTAAAGGCCGACTTGGAAGAACCAATATTGGAGGAAGATGGTTCCTCATCCACCTC 983
Query 1047 CAAAAGTGTTGGGCGGAAAGATTCTTTCGAAGAATAA 1083
|| ||||||||||| ||||||||||| ||||| |||
Sbjct 984 CAGAAGTGTTGGGCACAAAGATTCTTTTGAAGATTAA 1020
Score = 521 bits (282), Expect = 3e-147
Identities = 358/394 (91%), Gaps = 7/394 (2%)
Strand=Plus/Plus
Query 14 AGCGGAAGAAGGAGAGTGAGGAAATGCTTTTGAATAAGAAAGCAAAGTTAGAGTGGAGAC 73
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 5 AGCGGAAGAAGGAGAGTGAGGAAATGCGAGTGAATAAGAAAACAAAGTTAGAGTGGAGAC 64
Query 74 CGGAGGATTATGCGCAGGCAATTGGATTATCTCATAAGTGTACTGGTAAGGGTGAAAAGA 133
||||||||| ||| |||| ||||||| |||| |||||||||||||| |||| |||||||
Sbjct 65 CGGAGGATTGTGCTCAGGTAATTGGAGTATCAGATAAGTGTACTGGTGAGGGAGAAAAGA 124
Query 134 AGAAATGTCATTACAAGACATTTCAGTTTCATGCCAATAAATATGGACTGGAGGACTCAG 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 AGAAATGTCATTACAAGACATTTCAGTTTCATGCCAATAAATATGGACTGGAGGACTCAG 184
Query 194 TGCTATTGGTTCCAGAGGATGGAG---AAAAGCCCTATGTTGCGATCATAAAGGATATTT 250
||||| ||||||||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 185 TGCTACTGGTTCCAGAGGATGCAACCCAAAAGCCCTACGTTGCGATCATAAAGGATATTT 244
Query 251 ATACACAAAGAAAA-GAAGG-TCACGTGAAGCTTGAAGTGCAGTGGCTTTATCGTCCAGA 308
||| |||| ||||| |||| | | |||||||||||||||||||||||||||||||||||
Sbjct 245 ATATACAA-GAAAAAGAAGAAT-ATGTGAAGCTTGAAGTGCAGTGGCTTTATCGTCCAGA 302
Query 309 AGAGGTGGAGAAAAAATATGTTGGAAACTGGAAATCCAAAGGCTCAAGAGACCTCTTTTA 368
||| ||||||||||||||||| ||||| ||| || |||||| |||||||||||| |||||
Sbjct 303 AGATGTGGAGAAAAAATATGTCGGAAAATGGGAACCCAAAGACTCAAGAGACCTTTTTTA 362
Query 369 CAGTTTCCATCGCGACGAAGTATTTGCTGAATCT 402
||||||||||||||| ||||| | ||||||||||
Sbjct 363 CAGTTTCCATCGCGATGAAGTGTCTGCTGAATCT 396
Score = 82.4 bits (44), Expect = 6e-15
Identities = 48/50 (96%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 437 AGAATAAGCAAATCCCAAACCGTAGAAAGCATCCTGGCTTCATCGTGCAG 486
||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 397 AGAATAAGCAAATCCCAAACCGTAGAAAGCATCCTAGTTTCATCGTGCAG 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40334046186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5