BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G23120.1 Length=1083 Score E Sequences producing significant alignments: (Bits) Value Ahg329317 jgi|Araly1|329317|fgenesh1_pm.C_scaffold_7001544 857 0.0 > Ahg329317 jgi|Araly1|329317|fgenesh1_pm.C_scaffold_7001544 Length=1020 Score = 857 bits (464), Expect = 0.0 Identities = 540/577 (94%), Gaps = 3/577 (1%) Strand=Plus/Plus Query 509 AGAA-GCTTAGGAAGCTCACTTTTAATGGCTTTGACTTGCAGCAAAAGCGTGAAATAGAT 567 |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 AGAATGCTTAGGAAGTTCACTTTTAATGGCTTTGACTTGCAGCAAAAGCGTGAAATAGAT 504 Query 568 CATTTTGTGGAAAAGACAATTTTGCGAATAGGCCATCTTCGTGACATTGTGAAGGAGCAA 627 ||| ||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||| Sbjct 505 CATCTTGTGGAAAAGACGATTTTGCGAGTTGGCCATCTTCCTGACATTGTGAAGGAGCAA 564 Query 628 AAGACTTTGATCTCGAGGAGTAAAAGAACTGTTCCTCAAAGCTATATTATAAAAGCGGTG 687 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 565 AAGACTTTGATCTCGAGGAGTAAACGATCTGTTCCTCAAAGCTATATTATAAAAGCGGTG 624 Query 688 GAAACAAGTCGTGAAAGCAATAATGTGGTTAACTCCATCTTGGAAAGTTTTGATTTGTTG 747 |||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||||| Sbjct 625 GAAACAAGTCATGAAAGCAATAATGGGGTTAACTCGATCTTGGAAAATTTTGATTTGTTG 684 Query 748 ACCGGTGATTCGGATCGTGACAAGAGTTTGGAGGAGCTTCTGGAAGTAGTTAAGCCCAAG 807 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 685 ACCGGTGATTCGGATCGTGACAAGAGTTTGGAGGAGCTTCTGGAAGTAGTTAAGCCCC-G 743 Query 808 T-GTCGTACAAGTAGAAAGAAGCAAGCTGGTGATTATGATTCTTTCTGGCCAAATGATGT 866 | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 744 TTGTCGTACAAGTAAAAAGAAGCAAGCTGGTGATTATGATTCTTTCTGGCCAAATGATGT 803 Query 867 TGTTTCGGTGGTGAGTGCTCTTGAGCAGGCTTTATATGATTCTTTGAAAGACGATATAGC 926 |||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||| | Sbjct 804 TGTTTCAGTGGTGAGTGCTCTAGAGCAAGCTTTATATGATTCTTTGAAAGAAGATATATC 863 Query 927 AAAGTATAGTAACAAGGTGGAGATTCTGGTTGGTAAACTCAAGCGTGGTTTCACTTTTGA 986 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 864 AAAGTATAGTAACAAGTTGGAGATTCTGGTTGGTAAACTCAAGCGTGGTTTCACTTTTGA 923 Query 987 TGAATTAAAGGTTGATTTGGAGGAACCAATATTGAAGGATGATGCTTCTTCATCCATCTC 1046 ||||||||||| || ||||| |||||||||||| |||| |||| ||| ||||||| ||| Sbjct 924 TGAATTAAAGGCCGACTTGGAAGAACCAATATTGGAGGAAGATGGTTCCTCATCCACCTC 983 Query 1047 CAAAAGTGTTGGGCGGAAAGATTCTTTCGAAGAATAA 1083 || ||||||||||| ||||||||||| ||||| ||| Sbjct 984 CAGAAGTGTTGGGCACAAAGATTCTTTTGAAGATTAA 1020 Score = 521 bits (282), Expect = 3e-147 Identities = 358/394 (91%), Gaps = 7/394 (2%) Strand=Plus/Plus Query 14 AGCGGAAGAAGGAGAGTGAGGAAATGCTTTTGAATAAGAAAGCAAAGTTAGAGTGGAGAC 73 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 5 AGCGGAAGAAGGAGAGTGAGGAAATGCGAGTGAATAAGAAAACAAAGTTAGAGTGGAGAC 64 Query 74 CGGAGGATTATGCGCAGGCAATTGGATTATCTCATAAGTGTACTGGTAAGGGTGAAAAGA 133 ||||||||| ||| |||| ||||||| |||| |||||||||||||| |||| ||||||| Sbjct 65 CGGAGGATTGTGCTCAGGTAATTGGAGTATCAGATAAGTGTACTGGTGAGGGAGAAAAGA 124 Query 134 AGAAATGTCATTACAAGACATTTCAGTTTCATGCCAATAAATATGGACTGGAGGACTCAG 193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 AGAAATGTCATTACAAGACATTTCAGTTTCATGCCAATAAATATGGACTGGAGGACTCAG 184 Query 194 TGCTATTGGTTCCAGAGGATGGAG---AAAAGCCCTATGTTGCGATCATAAAGGATATTT 250 ||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||| Sbjct 185 TGCTACTGGTTCCAGAGGATGCAACCCAAAAGCCCTACGTTGCGATCATAAAGGATATTT 244 Query 251 ATACACAAAGAAAA-GAAGG-TCACGTGAAGCTTGAAGTGCAGTGGCTTTATCGTCCAGA 308 ||| |||| ||||| |||| | | ||||||||||||||||||||||||||||||||||| Sbjct 245 ATATACAA-GAAAAAGAAGAAT-ATGTGAAGCTTGAAGTGCAGTGGCTTTATCGTCCAGA 302 Query 309 AGAGGTGGAGAAAAAATATGTTGGAAACTGGAAATCCAAAGGCTCAAGAGACCTCTTTTA 368 ||| ||||||||||||||||| ||||| ||| || |||||| |||||||||||| ||||| Sbjct 303 AGATGTGGAGAAAAAATATGTCGGAAAATGGGAACCCAAAGACTCAAGAGACCTTTTTTA 362 Query 369 CAGTTTCCATCGCGACGAAGTATTTGCTGAATCT 402 ||||||||||||||| ||||| | |||||||||| Sbjct 363 CAGTTTCCATCGCGATGAAGTGTCTGCTGAATCT 396 Score = 82.4 bits (44), Expect = 6e-15 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 437 AGAATAAGCAAATCCCAAACCGTAGAAAGCATCCTGGCTTCATCGTGCAG 486 ||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 397 AGAATAAGCAAATCCCAAACCGTAGAAAGCATCCTAGTTTCATCGTGCAG 446 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40334046186 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5