BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23190.1
Length=2292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889847 jgi|Araly1|889847|Al_scaffold_0007_1833 2918 0.0
Ahg889849 jgi|Araly1|889849|Al_scaffold_0007_1835 538 7e-152
Ahg492543 jgi|Araly1|492543|fgenesh2_kg.7__1976__AT4G23220.1 339 7e-92
Ahg492544 jgi|Araly1|492544|fgenesh2_kg.7__1977__AT4G23210.2 311 2e-83
> Ahg889847 jgi|Araly1|889847|Al_scaffold_0007_1833
Length=2025
Score = 2918 bits (1580), Expect = 0.0
Identities = 1889/2035 (93%), Gaps = 34/2035 (2%)
Strand=Plus/Plus
Query 124 ATGAAGCAGAGGA-G--TTTGTTTTCAGTCCTCTGTTTTTTCTTCATAAGTTTTGGTGTT 180
||||| ||||||| | |||||||||| |||||||||||||| ||||||| || ||||||
Sbjct 1 ATGAATCAGAGGAGGACTTTGTTTTCAATCCTCTGTTTTTTCCTCATAAGCTTCGGTGTT 60
Query 181 GCTTCAGTTTCAGCACAAACATGCACGACGGACAAGGGGACTTTCAGACCCAACGGTACT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GCTTCAGTTTCAGCACAAACATGCACGACGGACAAGGGGACTTTCAGACCCAACAGTACT 120
Query 241 TACGACGTAAATCGCCGTCTCATCCTCTCTTCTCTTCCTTCAAATGTCACGGACCAAGAC 300
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 TACGACATAAATCGCCGTCTCATCCTTTCTTCTCTTCCTTCAAATGTCACGGACCAAGAC 180
Query 301 GGCTTATACTACAACGGTTCCATAGGACAACAACCGAACCGTGTCTACGCAATAGGGATG 360
|| ||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 181 GGTTTATACTACAACGGTTCCATAGGACAAGAACCGAACCGTGTCTATGCAGTAGGGATG 240
Query 361 TGCATCCCAGGATCAACTTCAGAAGACTGTTCTGATTGTATCAAGAAAGAGTCTGAAt-t 419
|||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct 241 TGCATCCCGGGATCAACTTCAGATGACTGTTCTGATTGTATCAAGAAAGCGTCTG-ATGA 299
Query 420 ttttttAAAGAATTGTCCTAACCAAACAGAGGCGTATTCATGGCCAGGTGAGCCAACGCT 479
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 ATTTTTAAAGAATTGTCCTAACCAAACAGAAGCGTATTCATGGCCAGGTGAGCCAACGCT 359
Query 480 TTGCTATGTGCGCTACTCCAACACTTCTTTCTCAGGATCTGCTGATCTGAACCCGCG-AA 538
|||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 360 TTGCTATGTGCGGTACTCCAACACTTCTTTCTCAGGATCTGCAGATCTGGACCCGCGCGT 419
Query 539 ATTGGCTCACCAACACTGGAG--A-CCTAGACTCAAATCTAACAGAGTTTACGAAAATAT 595
| | |||| ||||||||||| | || | |||||||||||||||||| ||| ||| |
Sbjct 420 ACT-GCTCTTCAACACTGGAGTTATCC--G-CTCAAATCTAACAGAGTTCACGGCAATTT 475
Query 596 GGGAAGGATTAATGGGTCGTATGATTTCTGCAGCTTCCACAGCAAAAAGCACACCTTCTT 655
|||||||| ||||||||||||||||| || |||| |||||||||||||||||||| || |
Sbjct 476 GGGAAGGACTAATGGGTCGTATGATTGCTACAGCCTCCACAGCAAAAAGCACACCATCGT 535
Query 656 CAAGTGATAACCATTACTCAGCTG-A-TTCAGCAGTCTTGACACCTCTCCTGAATATATA 713
| ||| |||||||||||||||||| | || |||| ||||||| || || | |||| ||
Sbjct 536 CTAGTAATAACCATTACTCAGCTGAAGTT--GCAGCCTTGACAACTTTCGAGGATATGTA 593
Query 714 TGCATTGATGCAATGCACGCCGGATCTTTC-CTCCGGTGATTGTGAAAACTGTCTGCGA- 771
|||||||||||||||||||| |||||||| | | ||||||||||||| ||||||| |
Sbjct 594 CGCATTGATGCAATGCACGCCAGATCTTTCTATTC-GTGATTGTGAAAATTGTCTGC-AG 651
Query 772 CAAAGCGCAATTGACTATCAGTCGTGCTGTAGCCAGAAGCGAGGAGGTGTTGTTATGCGG 831
| |||||||| |||||| ||||| |||||||| || || |||||||||||||||||| |
Sbjct 652 CGAAGCGCAAGTGACTACCAGTCATGCTGTAGTCAAAATCGAGGAGGTGTTGTTATGAGA 711
Query 832 CCAAGCTGCTTTTTGCGGTGGGATTTGTATACATATTCTAACGCTTTTGATAATCTTACG 891
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 712 CCAAGCTGCTTTTTGCGGTGGGATATGTATACATATTCTAACGCTTTTGATAATATTACG 771
Query 892 GTGGCTTCTCCTCCTCCAGAACCTCCTGTGACTGTG-C-C-A------CAACCTGCAGGT 942
||||||||||| ||||| |||||||||||||||||| | | | ||||||||||||
Sbjct 772 GTGGCTTCTCCACCTCCGGAACCTCCTGTGACTGTGCCACAAGGCCCCCAACCTGCAGGT 831
Query 943 GATCAGGACAACCCGACCAACAATGATAGCAAAGGAATCTCAGCTGGAGTTGTTGTGGCG 1002
||||| | |||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 832 GATCAAGCCAACACGACCGACAATGATAGCAAAGGAATCTCAGCTGGAATTGTTGTGGCG 891
Query 1003 ATCACCGTTCCCACTGTTATTGCCATCTTGATACTGCTGGTTTTAGGATTTGTTCTTTTC 1062
|| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 892 ATTATCGTTCCCACTGTTATTGTCATCTTGATACTGCTGGTTTTAGGATTTGTTCTTTTC 951
Query 1063 CGGAGAAGAAAATCCTACCAAAGAACTAAGACTGAATCTGAAAGTGATATTTCAACTACA 1122
|| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 952 CGAAGAAGAAAATCCTACCAAAGAACTGAGATTGAATCTGAAAGTGATATTTCAACTACC 1011
Query 1123 GATTCATTGGTATACGATTTTAAGACAATTGAAGCCGCAACTAACAAGTTTTCAACAAGT 1182
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1012 GATTCATTGGTATACGATTTTAAGACAATTGAAGCTGCAACTAACAAGTTTTCAACAAGT 1071
Query 1183 AATAAGCTTGGTGAAGGTGGATTCGGTGCGGTTTACAAGGGTAAGCTTTCTAACGGAACT 1242
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1072 AATAAGCTTGGTGAAGGTGGATTCGGTGCGGTTTACATGGGTAAGCTTTCTAATGGAACT 1131
Query 1243 GATGTAGCTGTGAAGCGACTGTCGAAAAAGTCAGGACAAGGCACAAGGGAGTTCAGGAAC 1302
|| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1132 GAAGTAGCTGTAAAGCGACTGTCGAAAAAGTCAGGACAAGGCACAAGAGAGTTCAGGAAT 1191
Query 1303 GAGGCTGTTCTTGTGACAAAACTTCAACATAGGAATCTGGTTAGACTTCTTGGATTCTGT 1362
||||||||||||||| ||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 1192 GAGGCTGTTCTTGTGTCAAAACTTCAACATAGGAACCTGGTCAGGCTTCTTGGATTCTGT 1251
Query 1363 TTGGAAAGAGAGGAACAGATTCTGATCTATGAATTTGTCCACAACAAAAGCCTTGACTAC 1422
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1252 TTGGAAAGAGAGGAACAGATTCTGATTTATGAGTTTGTCCACAACAAAAGCCTTGACTAC 1311
Query 1423 TTTCTTTTCGACCCGGAAAAGCAAAGTCAGCTAGACTGGACCCGGCGATACAAGATCATT 1482
||||| ||||||||||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1312 TTTCTATTCGACCCGGAGAAGCAAAGTCAGCTAGACTGGACCCGGAGATACAGGATCATT 1371
Query 1483 GGAGGAATTGCTCGAGGGATTCTATATCTTCATCAAGATTCACGGCTCAAAATCATACAT 1542
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GGAGGGATTGCTAGAGGGATTCTATATCTTCATCAAGATTCACGGCTCAAAATCATACAT 1431
Query 1543 CGTGACCTCAAAGCCAGCAACATTCTCTTAGATGCAGACATGAACCCAAAAATTGCAGAT 1602
|||||||||||||| |||||||||||||||||||| || ||||| || |||||||| |||
Sbjct 1432 CGTGACCTCAAAGCGAGCAACATTCTCTTAGATGCGGATATGAATCCGAAAATTGCTGAT 1491
Query 1603 TTTGGATTGGCAACTATTTTTGGAGTGGAGCAAACTCAAGGAAACACGAACAGAATTGCT 1662
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1492 TTTGGATTGGCAACTATTTTTGGAATGGAGCAAACTCAAGGAAACACGAACAGAATTGCT 1551
Query 1663 GGAACCTACGCTTACATGTCTCCCGAGTATGCGATGCATGGTCAATACTCCATGAAATCT 1722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 GGAACCTACGCTTACATGTCTCCCGAGTATGCGATGCATGGTCAATACTCCATGAAATCT 1611
Query 1723 GACATTTATAGCTTTGGAGTCTTAGTTCTTGAGATTATAAGCGGCAAGAAAAACAGCGGC 1782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 GACATTTATAGCTTTGGAGTCTTAGTTCTTGAGATTATAAGCGGCAAGAAAAACAGCGGC 1671
Query 1783 GTCTACCAGATGGATGAAACTAGTACTGCAGGAAACTTGGTCACTTATGCTTCGAGGCTT 1842
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1672 GTCTACCAGATGGATGAAACTAGTACTGCAGGAAACTTAGTCACTTATGCTTCAAGGCTT 1731
Query 1843 TGGA-GAAACAAGTCACCATTAGAGCTGGTGGATCCAACTTTTGGAAGGAATTATCAGAG 1901
|||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1732 TGGATGAA-CAAGTCACCATTAGAGCTGGTGGATCCAACCTTTGGAAGGAATTATCAGAG 1790
Query 1902 TAATGAAGTCACTAGGTGCATCCATATCGCGCTGTTATGTGTTCAAGAAAATCCAGAAGA 1961
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1791 TAATGAAGTCACTAGATGCATCCATATCGCGCTCTTATGTGTTCAAGAAAATCCAGAAGA 1850
Query 1962 CCGTCCAATGTTATCAACAATCATCTTAATGCTGACTAGTAACACAATTACTCTACCAGT 2021
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 1851 CCGTCCAATGTTATCAACAATCATCTTAATGCTCACTAGCAACACAATCACTCTACCAGT 1910
Query 2022 GCCTCGCCTACCGGGATTTTTCCCACGAAGCAGGCAACTGAAACTGGTATCTGAAGGATC 2081
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1911 GCCTCGCCTACCGGGATTTTTCCCACGAAGCAGGCAACTGAAACTGGTATCTGAGGGATC 1970
Query 2082 AGAGTCTGATCAGTATACAAGCAAGTCTT--CCTCATTTAGTTCGTAAAAATTGA 2134
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 1971 AGAGTCTGATCAGTCTACAAGCAAGTCTTTTCCTCATTTAGTTCGTAAAAAGTGA 2025
> Ahg889849 jgi|Araly1|889849|Al_scaffold_0007_1835
Length=2016
Score = 538 bits (291), Expect = 7e-152
Identities = 659/834 (79%), Gaps = 36/834 (4%)
Strand=Plus/Plus
Query 1151 TTGAAGCCGCAACTAACAAGTTTTCAACAAGTAATAAGCTTGGTGAAGGTGGATTCGGTG 1210
||||||| || || || |||||||||| | |||| || || ||| |||||||||||||
Sbjct 1034 TTGAAGCTGCGACAAATAAGTTTTCAATATGTAACAAACTCGGTCAAGGTGGATTCGG-A 1092
Query 1211 C-GGTTTACAAGGGTA-AGCTTTCTAACGGAACT-GATGTAGCTGTGAAGCGACTGTCGA 1267
| ||||||||||| | | ||| |||| || | | | || || |||||| |||| ||||
Sbjct 1093 CAAGTTTACAAGGGCACA-CTTCCTAATGG-AGTACAAGTTGCCGTGAAGAGACTATCGA 1150
Query 1268 AAA-AGTCAGGACAAGG-CACAAGGGAGTTCAGGAACGAGGCTGTTCTTGTGACAAAACT 1325
||| | || |||||||| | || ||||||| |||||||| |||| ||||| | || ||
Sbjct 1151 AAACA-TCGGGACAAGGTGA-AAAAGAGTTCAAGAACGAGGTTGTTGTTGTGGCCAAGCT 1208
Query 1326 TCAACATAGGAATCTGGT-TAGACTTCTTGGATTCTGTTTGGAAAGAG-AG-GAACAGAT 1382
||| || || |||||||| || ||||||||||| ||||| ||||||| || ||| | ||
Sbjct 1209 TCAGCACAGAAATCTGGTCAAG-CTTCTTGGATTTTGTTTTGAAAGAGAAGAGAA-A-AT 1265
Query 1383 TC-TGATCTATGAATTTGTCCAC-AACAAAAGCCTTGACTACTTTCTT-TTCGACCCGGA 1439
| || |||| || ||||| | || ||||||||||| ||| ||||| || ||| | |
Sbjct 1266 ACTTG-TCTACGAGTTTGT-GTCTAATAAAAGCCTTGATTAC-TTCTTGTTTGACTCTAA 1322
Query 1440 AAAGCAAAGTCAGCTAGACTGGAC-CCGGCGATACAAGATCATTGGAGGAATTGCTCGAG 1498
|||||| || ||||| || ||||| | || || |||||||| ||||||||| || |||
Sbjct 1323 AAAGCAGAGCCAGCTGGATTGGACTAC-ACGGTATAAGATCATAGGAGGAATTTCTAGAG 1381
Query 1499 GGAT-TCTATATCTTCATCAAGATTCACGGCTCAAAATCATACATCGTGACCTCAAAGCC 1557
| || | | ||||| |||||||||||||| |||| |||||||||||| |||||||||||
Sbjct 1382 GAATAT-TGTATCTCCATCAAGATTCACGACTCACAATCATACATCGAGACCTCAAAGCG 1440
Query 1558 AGCAACATTCTCTTAGATGCAGACATGAACCCAAAAATTGCAGATTTTGGATTGGCAACT 1617
|| ||||| ||||| ||||| || |||||||| |||||||| ||||||||| ||||||
Sbjct 1441 AGTAACATCCTCTTGGATGCTGATATGAACCCGAAAATTGCTGATTTTGGAATGGCAAGA 1500
Query 1618 ATTTTTGGAGTGGAGCAAACTCAAGGAAACACGA-ACAGAATTGCTGGAACCTACGCTTA 1676
||||||||| |||| ||||| ||| || |||| | ||| | | ||||||||| | |||
Sbjct 1501 ATTTTTGGAATGGACCAAACAGAAGCCAATACGAGA-AGAGTAGTTGGAACCTATGGTTA 1559
Query 1677 CATGTCTCCCGAGTATGCGATGCATGGTCAATACTCCATGAAATCTGACATTTATAGCTT 1736
|||||| || |||||||| ||| | || |||| ||| ||||||||||| | ||||||||
Sbjct 1560 CATGTCACCTGAGTATGCCATGTACGGCCAATTCTCAATGAAATCTGATGTCTATAGCTT 1619
Query 1737 TGGAGTCTTAGTTCTTGAGATTATAAGCGGCAAGAAAAACAGCGGCGTCTACCAGATGGA 1796
|||||||||||||||||||||||||||||| | ||| |||||| || |||| ||||||||
Sbjct 1620 TGGAGTCTTAGTTCTTGAGATTATAAGCGGGAGGAAGAACAGCAGCCTCTATCAGATGGA 1679
Query 1797 TGAAACTAGTACTGCAGGAAACTTGGTCACTTATGCTTCGAGGCTTTGGAGAAACAAGTC 1856
|| || || || ||||||||||| || ||| ||| |||||| |||| || || |
Sbjct 1680 TG---CTTGTT-TG--GGAAACTTGGTTACATATACTTGGAGGCTATGGACCAATGAGAC 1733
Query 1857 ACCATTAGAGCTGGTGGATCCAACTTTTGGAAGGAATTATCAGAGTAATGAAGTCACTAG 1916
||||||||||| |||||| | | ||| ||| ||||||||| || || ||| | | |||
Sbjct 1734 GCCATTAGAGCTCGTGGATTCGTCCTTTCGAAAGAATTATCAAAGAAACGAAATAATTAG 1793
Query 1917 GTGCATCCATATCGCGCTG-TTATGTGTTCAAGAAAATCCAGAAGACCGTCCAA 1969
|||||||||||||| || ||||||||||||||| || | ||| | |||||||
Sbjct 1794 ATGCATCCATATCGC-CTTATTATGTGTTCAAGAAGATACTGAATATCGTCCAA 1846
> Ahg492543 jgi|Araly1|492543|fgenesh2_kg.7__1976__AT4G23220.1
Length=2409
Score = 339 bits (183), Expect = 7e-92
Identities = 625/831 (75%), Gaps = 59/831 (7%)
Strand=Plus/Plus
Query 1198 GGTGGATTCGGTGCGGTTTACAAGGGTAAGCTTTCTAACGGAACTGATGTAGCTGTGAAG 1257
|||||||| || | |||| ||||||| || | |||||| || || || || | |||
Sbjct 1096 GGTGGATTTGGAGAAGTTTTCAAGGGTGTGC--T-TAACGGCACAGAAGTTGCAATTAAG 1152
Query 1258 CGACTGTCGAAAAAGTCA--G-GACAAGGCACAAGGGAGTTCAGGAACGAGGCTGTTCTT 1314
| ||||| ||||| || | ||||||| || | ||||||| ||| |||| |||| ||
Sbjct 1153 AGGCTGTC--AAAAG-CATCGAGACAAGGTGCACGAGAGTTCAAGAATGAGGTTGTTGTT 1209
Query 1315 G-TGACAAAACTTCAACATAGGAATCTGGTT-AGACTTCTTGGATTCTGTTTGGAAAGAG 1372
| || | ||||| |||||||||||||| ||| || ||||| || || ||| | ||| |||
Sbjct 1210 GTTG-CTAAACTCCAACATAGGAATCTTGTTAAG-CTTCTCGGGTTTTGTCTAGAAGGAG 1267
Query 1373 AGGA-ACAGATTC-TGATCTATGAATTTGTCCACAACAAAAGCCTTGACTACTTTCT-TT 1429
| || | |||| | || | || || ||||||| |||||| ||||| || | ||| || ||
Sbjct 1268 ATGAGA-AGATACTTG-TTTACGAGTTTGTCCCCAACAAGAGCCTCGATTTCTTCCTCTT 1325
Query 1430 TCGACCCGGA-AAAGCAAAGTCAGCTAGACTGGACCCGGCGATACAAGATCAT-TGGAGG 1487
| ||||| | |||||| | ||| ||||||||| || ||||| || || || ||
Sbjct 1326 T-GACCC-TACCAAGCAAGGACAGTTAGACTGGAAAAAACGTTACAACATTATCCGG-GG 1382
Query 1488 AATTGCTCGAGGGATTCTATATCTTCATCAAGATTCACGGCTCAAAATCATACATCGTGA 1547
||| ||||||| ||||||||||| |||||||| |||||||| | |||||||||||||||
Sbjct 1383 AATCACTCGAGGAATTCTATATCTCCATCAAGACTCACGGCTTACAATCATACATCGTGA 1442
Query 1548 CCTCAAAGCCAGCAACATTCTCTTAGATGCAGACATGAACCCAAAAATTGCAGATTTTGG 1607
||||||||||||||| |||||| ||||||| || ||||| ||||||||||| ||||||||
Sbjct 1443 CCTCAAAGCCAGCAATATTCTCCTAGATGCTGATATGAATCCAAAAATTGCTGATTTTGG 1502
Query 1608 ATTGGCAACTATTTTTGG-AGTGGAGCAAACTCAAGGAAACACGAACAGAATTGCTGGAA 1666
| |||| | |||||||| | | || |||| | || || || || | ||| | ||| |
Sbjct 1503 AATGGCTAGAATTTTTGGGA-TCGATCAAAGTGGAGCTAATACAAAAAAAATAGTTGGGA 1561
Query 1667 CCTACGC--TTACATGTCTCCCGAGTATGCGATGCATGGTCAATACTCCATGAAATCTGA 1724
| |||| ||||||| |||| || |||| ||||||||| | || ||| | ||||||||
Sbjct 1562 C--ACGCGGTTACATGCCTCCAGAATATGTGATGCATGGCCTATTCTCAACAAAATCTGA 1619
Query 1725 CATTTATAGCTTTGGAGTCTTAGTTCTTGAGATTATAAGCGG-CAAGAAA-AACAGCGGC 1782
| ||||| ||||||||||||||||||||||||||| | || | |||| ||||| |
Sbjct 1620 TGTCTATAGTTTTGGAGTCTTAGTTCTTGAGATTATATGTGGTC--GAAATAACAGATTC 1677
Query 1783 GTCTACCAGATGGATGAAACTAGTACT-GCAGGAAACTTGGTCACTTATGCTTCGAGG-C 1840
||| ||||| | | || || | | | | || || ||||| || || |||| |||| |
Sbjct 1678 GTCCACCAG-TC-A-GACACCAC-AGTTG-AG-AAT-TTGGTGACATACGCTTGGAGGTC 1730
Query 1841 TTTGGAGAAACAAG-TCACCATTAGAGCTGGTGGATCCAACT-TTTG-GAAGGAATTATC 1897
| |||||||| | |||||||| || ||||||||||||| ||| || | |||| |
Sbjct 1731 GT-GGAGAAACG-GCTCACCATTGGAAATGGTGGATCCAACCATTTCAGA-G-AATTGTG 1786
Query 1898 AGA--GTAATGAAGTCACTAGGTGCATCCATATCGCGCTGTTATGTGTTCAAGAAAATCC 1955
| | | || ||||| || || |||||||| || || ||| ||||||||||| | |||||
Sbjct 1787 ACACCG-AA-GAAGTGACAAGATGCATCCACATTGCACTGCTATGTGTTCAACACAATCC 1844
Query 1956 -AGAAGACCGTCCAATG-TTATCAACAATC-ATCTTAATGCTGACTAGTAA 2003
| | || ||||| | | || || |||||| | | | ||||| |||| |||
Sbjct 1845 CACA-GATCGTCCCA-GCTTGTCGACAATCTA-CATGATGCTCACTAATAA 1892
> Ahg492544 jgi|Araly1|492544|fgenesh2_kg.7__1977__AT4G23210.2
Length=2189
Score = 311 bits (168), Expect = 2e-83
Identities = 530/694 (76%), Gaps = 67/694 (10%)
Strand=Plus/Plus
Query 1291 GAGTTCAGGAACGAGGCTGTTCTTGT-GACAAAACTTCAACATAGGAATCTGGTTAGACT 1349
||||||| |||||||| |||| |||| | |||||||||| ||||| ||||| ||||||||
Sbjct 1237 GAGTTCAAGAACGAGGTTGTTGTTGTCG-CAAAACTTCAGCATAGAAATCTTGTTAGACT 1295
Query 1350 TCTTGGATTCTGTT-TG-GAAA-GAGAGGAACAGATTCT-GATCTATGAATTTGT-CCAC 1404
||| || || | || || ||| |||| ||| |||| || | | || || ||||| || |
Sbjct 1296 TCTCGG-TT-T-TTCTGTCAAAGGAGAAGAAAAGATACTCG-TGTACGAGTTTGTGCC-C 1350
Query 1405 AACAAAAGCCTTGACTACTTTCTTTTC-GACCCGGA-AAAGCAAAGTCAGCTAGACTGGA 1462
|||||||| ||||| | |||| |||| ||||| | ||||||||| || |||||||||
Sbjct 1351 AACAAAAGTCTTGA-TTGTTTCCTTTCTGACCC-TATAAAGCAAAGAGAGTTAGACTGGA 1408
Query 1463 CCCGGCGATACAAGATCATTGGAGGAATTGCTCGAGGGATTCTATATCTTCATCAAGATT 1522
| |||| ||||||||||||||||||||||| ||||||||| |||||||||||| | ||
Sbjct 1409 CAAGGCGGCACAAGATCATTGGAGGAATTGCTAGAGGGATTCAATATCTTCATCATGGTT 1468
Query 1523 CACGGCTCAAAATCATACATCGTGACCTCAAAGCCAGCAA-CATTCTCTTAGATGCAGAC 1581
||||| |||||||||||||||||||||||||||| | || ||| ||||| |||| ||
Sbjct 1469 CACGGATCAAAATCATACATCGTGACCTCAAAGCG-GAAAACATACTCTTGGATGGTGAT 1527
Query 1582 ATGAACCCAAAAATTGCAGATTTTGGATTGGCAACTATTTTTGGAGTGGAGCAAACTCA- 1640
|||||||| || ||| | ||||||||| |||||| || |||||| |||| |||||| |
Sbjct 1528 ATGAACCCCAAGATTTCTGATTTTGGAATGGCAAGGATCTTTGGAATGGACCAAACT-AG 1586
Query 1641 AGGAAACACGAACA-GAATTGCTGGAACCT-ACGCTTACATG--TCTCCC-GAG-T-ATG 1693
|| ||||| || | | |||| |||||| | | | | | || ||| | ||| | ||
Sbjct 1587 AGCTAACAC-AAGAAGGATTGTTGGAAC-TGA-G-TAAAATTAATCTTGCAGAGGTTATA 1642
Query 1694 CGATGC-ATG-GTC-AA-TACTCCATGAAATCTGACATTTATAGCTTTGGAGTCTTAGTT 1749
| | | | || || | ||| ||||||||||| | ||||||| |||||||||||||
Sbjct 1643 TGCCCCCA-GAGTATAAATTCTCAATGAAATCTGATGTGTATAGCTATGGAGTCTTAGTT 1701
Query 1750 CTTGAGATTATAAGCGGCAAGAAAAACAGCGG-CGTCTACCAGATGGATGAAACTAGTAC 1808
|||||||||||| |||||||||| ||||| | | ||| || | | | || |
Sbjct 1702 CTTGAGATTATATGCGGCAAGAAGAACAG-GAACTTCTGCCC--TCCA-G---CT----C 1750
Query 1809 TGCAGGAAACTTGGTCAC-TTATGCTTCGAGGCTT-TGGAGAAACAAGTCACCATTAGAG 1866
|| || |||||||| || ||||| |||| || |||||| || | ||||||||||
Sbjct 1751 --CA--AAT-TTGGTCACATT-TGCTTGGAGG-TTATGGAGAGACGGGGCACCATTAGAA 1803
Query 1867 CTGGTGGATCCAACT--TTTG-GAAGGAATTATC-AGAGTAATGAAGTCACTAGG-TGCA 1921
|| |||||||||| | ||| || | |||| || | | ||||||| | || | ||||
Sbjct 1804 CTCGTGGATCCAA-TAATTTCAGA-G-AATTGTCCA-ACCGATGAAGTGA-TAAGATGCA 1858
Query 1922 TCCATATCGCGCTGTTATGTGTTCAAGAAAATCC 1955
|||| || ||||| ||||||||||||||| ||||
Sbjct 1859 TCCACATTGCGCTCTTATGTGTTCAAGAAGATCC 1892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86312495170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5