BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23210.3
Length=2261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492544 jgi|Araly1|492544|fgenesh2_kg.7__1977__AT4G23210.2 1332 0.0
Ahg889845 jgi|Araly1|889845|Al_scaffold_0007_1831 342 6e-93
Ahg492548 jgi|Araly1|492548|fgenesh2_kg.7__1981__AT4G23130.2 342 6e-93
Ahg889847 jgi|Araly1|889847|Al_scaffold_0007_1833 254 3e-66
> Ahg492544 jgi|Araly1|492544|fgenesh2_kg.7__1977__AT4G23210.2
Length=2189
Score = 1332 bits (721), Expect = 0.0
Identities = 833/886 (94%), Gaps = 12/886 (1%)
Strand=Plus/Plus
Query 62 ATGAAGCAGAGGAGTTTATTATCAATCCTCTGTTTTATCCTTCTAGCCTCTGGTGTTGCT 121
||||||||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 1 ATGAAGCAGAGGAGTTTCTTATCAATCCTCTGTTTTGTCCTTCTAACCTTTGGTGTTGCT 60
Query 122 TCTGTTTCAGCACAAACATGCATAGAGAACCGTAAATATTTCACACCCAACGGTACATAC 181
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 61 TCTGTTTCAGCACAAACATGCATACAGAACCGTAAATATTTCATACCCAACGGTACATAC 120
Query 182 GATTCAAATCGTCGTCTTATCCTCTCTTCTCTTCCTAACAATACCGCGTCTCGAGATGGT 241
||||||||||||| |||| |||||||| |||||||||||||||||||||||| |||||||
Sbjct 121 GATTCAAATCGTCTTCTTCTCCTCTCTACTCTTCCTAACAATACCGCGTCTCAAGATGGT 180
Query 242 TTCTACTACGGTTCCATTGGAGAAGAGCAAGATCGAGTCTACGCATTAGGGATGTGCATC 301
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TTCTACTACGGTTCTATTGGAGAAGAGCAGGATCGAGTCTACGCATTAGGGATGTGCATC 240
Query 302 CCGAA-ATCAACTCCAAGTGATTGTTCTAACTGTATCAAGGGCGCGGCAGGCTGGTTGAT 360
|| || ||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 241 CC-AAGATCAACTCCAAGTGACTGTTCTAATTGTATCAAGGGCGCGGCAGGCTGGTTGAT 299
Query 361 ACAGGATTGTGTCAACCAGACAGACGCGTACTATTGGGCACTTGATCCAACGCTGTGCCT 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 ACAGGATTGTGTCAACCAGACAGACGCGTATTATTGGGCACTTGATCCAACGCTGTGCCT 359
Query 421 TGTCCGCTACTCCAACATTTCTTTCTCAGGATCTGCAGCTTTTTGGGAGATTG-AGCCGC 479
|||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||
Sbjct 360 TGTCCGCTACTCCAACATTTCTTTCTCAGGATCTGCAGCTTTTTGGGAAACTACA-CCGC 418
Query 480 AGTATTTGGTGTTGAACACTGCAACTATCGCCTCAAATCTAACAGAGTTCAAGACAATAT 539
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 419 AGTATTTGGTCTTGAACACTGCAACTATCGCCTCAGATCTAACAGAGTTCAAGACAATAT 478
Query 540 GGGAAGACTTAACATCTCGTACGATTACTGCAGCCTCCGCAGCAAGAAGCACACCATCGT 599
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
Sbjct 479 GGGAAGACTTAACATCTCGTATGATTACTGCAGCCTCCGCAGCAAGAAGAACACCATCAT 538
Query 600 CCAGTGATAACCATTACAGAGTTGATTTTGCGAACTTGACAAAATTCCAGAATATCTACG 659
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 539 CCAGTGACAACCATTACAGAGTTGATTTTGCGAACTTGACAAAATTCCAGAATATATATG 598
Query 660 CATTGATGCAATGCACGCCAGATATTTCTTCTGACGAATGTAACAACTGTCTCCAACGAG 719
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 599 CATTAATGCAATGCACGCCAGATATTTCTTCTGACGAATGTAACAGCTGTCTCCAACAAG 658
Query 720 GCGTACTTGAGTACCAGTCATGCTGTGGAAATAATACTGGAGGCTATGTTATGCGGCCAA 779
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 GCGTACTTGAGTACCAGTCATGCTGTGGAAATAATACAGGAGGCTATGTTATGCGGCCAA 718
Query 780 TCTGCTTTTTCCGGTGGCAGCTTTTTACATTCTCTAAGGCTTTTCATAACATTACCTTGG 839
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 719 TCTGCTTTTTTCGGTGGCAGCTTTTTACATTCTCTAAGGCTTTTGATAACATTACCCTGG 778
Query 840 CTACTACTCCT-C-C-TC-T-TT-CTCCTCCTCCACTGCAACGTCCTGTGGTTGCGTCAC 893
||||| ||||| | | || | || ||||||||||||||||||||||||||||||||||||
Sbjct 779 CTACTCCTCCTTCTCCTCCTCTTTCTCCTCCTCCACTGCAACGTCCTGTGGTTGCGTCAC 838
Query 894 AACCACCTTCTGC-AGACAACCGGGACAAGAAGAGAGACAATAGTA 938
||||||||||||| | | ||||| ||||| | |||||||||||
Sbjct 839 AACCACCTTCTGCCA-AGGACCGGCCCAAGACTACAGACAATAGTA 883
Score = 1243 bits (673), Expect = 0.0
Identities = 1093/1289 (85%), Gaps = 56/1289 (4%)
Strand=Plus/Plus
Query 941 GGAAAAATCTCAATGAAAACTATTCTAGCAATTGTTGTGGTTGGTATAGTCATCCTCATC 1000
||||| |||||||||||||||||| |||||||||||||||||| | ||||||| | ||
Sbjct 928 GGAAATATCTCAATGAAAACTATTGTAGCAATTGTTGTGGTTGTTGTAGTCAT--T-GTC 984
Query 1001 ATCATCTCGGGAATTCTTGCTCGCCGGTTTGCTCGG-AAGGAAAAACCATATCAAGAAGT 1059
||||||| || | |||| ||| |||||||||||||| |||| ||||||||||||||||||
Sbjct 985 ATCATCTTGGCACTTCTCGCTTGCCGGTTTGCTCGGAAAGG-AAAACCATATCAAGAAGT 1043
Query 1060 TGAACTTAATCAAACTGGTATTACATCTGTACGCTCCCTGCAATACAAATTTAAGACGAT 1119
||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct 1044 TGAACTTAATCAAACTGGTATTACAACTGTACGGTCCCTGCAATATAAATTTAAGACGAT 1103
Query 1120 CGAAA-CTGCAACAAATAATTTTTCAGAGAGACTTGGTCATGGTGGATCTGGACA-TGTT 1177
| ||| |||||||||| || |||||||| | | | || || ||||||| |||| | ||||
Sbjct 1104 C-AAATCTGCAACAAAGAAATTTTCAGACAAAATCGGCCAAGGTGGATTTGGA-AGTGTT 1161
Query 1178 TTCAAGGGAAGGTTGCCTGACGGAAAGGAAATTGCAGTGAAGAGATTGTCAGAAA-AAAC 1236
|||||||| | ||||||||| ||||| ||||||||||||||||| |||||| ||| | |
Sbjct 1162 TTCAAGGGTATGTTGCCTGATGGAAAAGAAATTGCAGTGAAGAGGTTGTCA-AAATCATC 1220
Query 1237 AGAACAAAGTAAGAAAGAGTTCAAGAACGAGGTTGTTCTTGTCGCGAAACTTCAGCATAG 1296
|||||| || |||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1221 CGAACAAGGTGAGAAAGAGTTCAAGAACGAGGTTGTTGTTGTCGCAAAACTTCAGCATAG 1280
Query 1297 AAATCTTGTTAGACTTCTCGGTTTTTCTGTCAAAGGAGAAGAAAAGAT-CATAGTCTACG 1355
|||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||
Sbjct 1281 AAATCTTGTTAGACTTCTCGGTTTTTCTGTCAAAGGAGAAGAAAAGATAC-TCGTGTACG 1339
Query 1356 AGTATT-TGCCCAACAGAAGTCTCGACTACATCCTCTT-TGACCCTACAAAGCAAGGAGA 1413
||| || ||||||||| |||||| || | |||| || |||||||| ||||||| ||||
Sbjct 1340 AGT-TTGTGCCCAACAAAAGTCTTGATTGTTTCCT-TTCTGACCCTATAAAGCAAAGAGA 1397
Query 1414 GTTAGACTGGAAAAAGCGGTACAAGATCATTGGAGGAACTGCTAGAGGGATTCTATATCT 1473
||||||||||| || |||| |||||||||||||||||| |||||||||||||| ||||||
Sbjct 1398 GTTAGACTGGACAAGGCGGCACAAGATCATTGGAGGAATTGCTAGAGGGATTCAATATCT 1457
Query 1474 TCATCAAGATTCACA-ACCCACAATCATACATCGTGACCTCAAAGCGGGTAATATCCTCT 1532
|||||| | ||||| | | | |||||||||||||||||||||||||| || || ||||
Sbjct 1458 TCATCATGGTTCACGGATCAA-AATCATACATCGTGACCTCAAAGCGGAAAACATACTCT 1516
Query 1533 TGGACGCTCATATGAACCCGAA-AGTTGCAGATTTTGGGACGGCAAGGATCTTTGGGATG 1591
|||| | | |||||||||| || | || | |||||||| | ||||||||||||||| |||
Sbjct 1517 TGGATGGTGATATGAACCCCAAGATTT-CTGATTTTGGAATGGCAAGGATCTTTGGAATG 1575
Query 1592 GACCAAAGT-GTAGCTATTACAGCGAATGCA--GCCGGAACTCCCGGTTACATGGCCC-- 1646
||||||| | | ||||| ||| ||| | | | |||||| | | | || |
Sbjct 1576 GACCAAACTAG-AGCTAACACAA-GAAGG-ATTGTTGGAACTGA-G-TAAAATTAATCTT 1630
Query 1647 -CAGAA-T-ATATGGAACTAG-GCG-AA-TTCTCGATGAAATCTGACGTGTATAGCTATG 1700
|||| | ||||| | || | || ||||| ||||||||||| |||||||||||||
Sbjct 1631 GCAGAGGTTATATGCCCCCAGAGTATAAATTCTCAATGAAATCTGATGTGTATAGCTATG 1690
Query 1701 GGGTCTTAGTTCTTGAGATTATATGCGGCAAGAGGAACACGAGCTTCT-CATCTCCGGTT 1759
| ||||||||||||||||||||||||||||||| ||||| || ||||| | |||| | |
Sbjct 1691 GAGTCTTAGTTCTTGAGATTATATGCGGCAAGAAGAACAGGAACTTCTGCC-CTCCAGCT 1749
Query 1760 C-AGAATTTTGTCACATATGTCT-GGAGGTTATGGAAA-AGCGGGACACCATTA-AACCT 1815
| | ||||| ||||||| || || |||||||||||| | | |||| |||||||| ||| |
Sbjct 1750 CCA-AATTTGGTCACATTTG-CTTGGAGGTTATGGAGAGA-CGGGGCACCATTAGAAC-T 1805
Query 1816 CGTTGA-CGCAACAATTGCAGAGAATTATA-AGAGTGAAGAAGTGATAAGATGTATCCAC 1873
||| || | ||| |||| ||||||||| | | | || |||||||||||||| ||||||
Sbjct 1806 CGTGGATC-CAATAATTTCAGAGAATTGTCCA-ACCGATGAAGTGATAAGATGCATCCAC 1863
Query 1874 ATTGCGCTCCTATGTGTTCAAGAAGAACCTACAGATCGTCCTGACTTTTCGATAATCATG 1933
||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1864 ATTGCGCTCTTATGTGTTCAAGAAGATCCTACAGATCGTCCCGACTTTTCGATAATCATG 1923
Query 1934 TCGATGCTCACTAGCAATTCCCTCATCTTACCTGTTCCTAAACCACCTCCATCCTTCATT 1993
||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||
Sbjct 1924 TCGATGCTCACTAGCAATTCCGTCATCTTACCTGTTCCTGAACCACCTGGATTCTTCATT 1983
Query 1994 CCAGGTAGACCAAACCAATCTACGACGAGGCCCAGTTCCCAAAATATCAATGATGGAAGG 2053
|| || || |||||||||||||| |||| ||| |||||||| ||||||||||| ||
Sbjct 1984 TCAAATACACAAAACCAATCTACGAGGAGGTCCAATTCCCAAACTATCAATGATGAAACT 2043
Query 2054 TGGTCCTTGTTGAAAATGATGTTCCATTGAGACATTGGAACTTGTT-TGAAGTAAACTAT 2112
|| |||| | |||| ||||||||||||||| |||||| |||| ||| | |||||||||||
Sbjct 2044 TGATCCTCGCTGAAGATGATGTTCCATTGAAACATTGAAACT-GTTGT-AAGTAAACTAT 2101
Query 2113 GTTTT-TGGTATTTCAGTTTAAACTGTTATGAATTATTCATAAAGTTATGTATGTGTAAA 2171
|||| |||||||||||||| |||||| |||||||||||| |||||||||||||||||||
Sbjct 2102 ATTTTCTGGTATTTCAGTTTGAACTGTAATGAATTATTCA-AAAGTTATGTATGTGTAAA 2160
Query 2172 TTGTGAGATACTCATCAAAGTAGTTATGT 2200
|||||||||||||||||||||||||||||
Sbjct 2161 TTGTGAGATACTCATCAAAGTAGTTATGT 2189
> Ahg889845 jgi|Araly1|889845|Al_scaffold_0007_1831
Length=1983
Score = 342 bits (185), Expect = 6e-93
Identities = 487/625 (78%), Gaps = 52/625 (8%)
Strand=Plus/Plus
Query 1100 CAATACAAATTT-AAGACGA-TCGAAACTGCAACAAATAATTTTTCAG-AGAG-----A- 1150
|||| | ||||| ||| | | || || ||||||||||||| ||||||| |||| |
Sbjct 958 CAATTCGAATTTAAAG-CTATTC-AAGCTGCAACAAATAA-TTTTCAGAAGAGTAACAAG 1014
Query 1151 CTTGGTCATGGTGGATCTGGACATGTTTTCAAGGGAAGGTTGCCTG-ACGGAA-AGGAAA 1208
|| ||||||||||||| ||| | |||| |||||||| ||| || | | |||| | |||
Sbjct 1015 CTAGGTCATGGTGGATTTGGTGAAGTTTACAAGGGAACGTTTCC-GAATGGAACA-GAAG 1072
Query 1209 TTGCAGTGAAGAGATTGTCAGAAAA-AACAGAACAAAGT-AAGAAAGAGTTCAAGAACGA 1266
|||| |||||||| |||| |||| ||| ||| || || ||||||| ||||||||
Sbjct 1073 TTGCTGTGAAGAGGCTGTC-TAAAACTTCAGGTCAAGGTGAA-CAAGAGTTTAAGAACGA 1130
Query 1267 GGTTG-TTCTTGTCGCGAAA-CTTCAGCATAGAAATCTTGTTAGACTTCTCGGTTTTTCT 1324
|| || ||||||| || ||| || || ||||||||||| |||||||||||||| || |||
Sbjct 1131 GG-TGCTTCTTGTAGC-AAAGCTCCAACATAGAAATCTCGTTAGACTTCTCGGGTTCTCT 1188
Query 1325 GTCAAAGGAGAAGAAAAGATCA-TAGTCTACGAGTATT-TGCCCAACAGAAGTCTCGACT 1382
||| |||||||||||||||| | | |||||||||| || ||| ||| | |||||| ||||
Sbjct 1189 GTCGAAGGAGAAGAAAAGAT-ACTTGTCTACGAGT-TTGTGCACAATAAAAGTCTTGACT 1246
Query 1383 ACATCCTCTTTGACCCTACAAAGCAAGGAG---AGTTAGACTGGA-AAAAGCGGTACAAG 1438
|| |||||||||||||| |||| ||| | | || || |||| |||| || || ||
Sbjct 1247 ACTTCCTCTTTGACCCTGTAAAG--AGGGGTCAACTT-GATTGGAGAAAA-CGCTATAAC 1302
Query 1439 ATCATTGGA-GGAACTGCTAGAGGGATTCTATATCTTCATCAAGATTCACAACCCACAAT 1497
|| | | || |||| | || |||||||| ||||||||||||||||||||| | ||||||
Sbjct 1303 ATTA-TCGAGGGAATTACTCGAGGGATTTTATATCTTCATCAAGATTCACGGCTCACAAT 1361
Query 1498 CATACATCGTGACCTCAAAGCGGGTAATATCCTCTTGGACGCTCATATGAACCCGAAAGT 1557
|||||||||||||||||||||| |||| || || ||||| || |||||||||||||| |
Sbjct 1362 CATACATCGTGACCTCAAAGCGAGTAACATTCTATTGGATGCAGATATGAACCCGAAAAT 1421
Query 1558 TGCAGATTTTGGGACGGCAAGGATCTTTGGGA-TGGACCAAAGTGTAG-CTATTACAGCG 1615
||||||||||| | |||||||| ||| || ||||||| | || || | || |||| |
Sbjct 1422 CGCAGATTTTGGAATGGCAAGGAA-TTTCAGAGTGGACCAGACTGAAGACAAT-ACAG-G 1478
Query 1616 AAT-GCAGCCGGAAC-TCCCGGTTACATGGC-CCCAGAATATATGG--AACTAGGCGAAT 1670
|| | || ||||| | ||||||||| | ||| || ||| ||| || | ||| | |
Sbjct 1479 AAGAGTAGTTGGAACATTT-GGTTACATGCCTCCC-GAGTATGTGGCGAA-TGGGC-AGT 1534
Query 1671 TCTCGATGAAATCTGACGTGTATAG 1695
|||||||||||||||| || |||||
Sbjct 1535 TCTCGATGAAATCTGATGTTTATAG 1559
> Ahg492548 jgi|Araly1|492548|fgenesh2_kg.7__1981__AT4G23130.2
Length=2044
Score = 342 bits (185), Expect = 6e-93
Identities = 489/628 (78%), Gaps = 51/628 (8%)
Strand=Plus/Plus
Query 1150 ACTTGGTCATGGTGGATCTGGACATGTTTTCAAGGG-A-AGGTTGCCTGACGGA-AAGGA 1206
||| ||||| ||||||| |||||| |||| |||||| | | || || | ||| | |
Sbjct 1047 ACTCGGTCAAGGTGGATTTGGACAAGTTTACAAGGGCATA-CTT-TCTAATGGATTA-CA 1103
Query 1207 AATTGCAGTGAAGAGATTGTCAGAAAA-AACAGAACAAAGT-AAGAAAGAGTTCAAGAAC 1264
| |||| ||||||||| | || ||||| | ||| |||| || || |||||||||||||||
Sbjct 1104 AGTTGCGGTGAAGAGACTATC-GAAAACATCAGGACAAGGTGAA-AAAGAGTTCAAGAAC 1161
Query 1265 GAGGTTGTTCTTGTCGCGAAA-CTTCAGCATAGAAATCTTGT-TAGACTTCTCGGTTTTT 1322
|| |||||| |||| || ||| |||||||| ||||||||||| || ||||| || ||||
Sbjct 1162 GAAGTTGTTGTTGTGGC-AAAGCTTCAGCACAGAAATCTTGTCAAG-CTTCTTGGATTTT 1219
Query 1323 CTGTCA-A-AGGAGAAGA-AAAGATCA-TAGTCTACGAGTATT-TGCCCAACAGAAGTCT 1377
| | | | ||| ||||| ||| || | | |||||||||| || || | || | ||||||
Sbjct 1220 GT-TTAGAGAGG-GAAGAGAAA-AT-ACTTGTCTACGAGT-TTGTGTCTAATAAAAGTCT 1274
Query 1378 CGACTACATCCTCTTTGACCCTACAAAGCAAGGAG--AGTTAGACTGGA--AAAAGCGGT 1433
|| ||| || | ||||| ||| || || | ||| || |||| |||| | || |||
Sbjct 1275 TGATTACTTCTTGTTTGATTCTAGAATGC-A-GAGCCAGCTAGATTGGACTACAA--GGT 1330
Query 1434 ACAAGATCATTGGAGGAACTGCTAGAGGGAT-TCTATATCTTCATCAAGATTCACAACCC 1492
| |||||||| ||||||| ||||||||| || | | ||||| ||||||||||||| || |
Sbjct 1331 ATAAGATCATAGGAGGAATTGCTAGAGGAATAT-TGTATCTCCATCAAGATTCACGACTC 1389
Query 1493 ACAATCATACATCGTGACCTCAAAGCGGGTAATATCCTCTTGGACGCTCATATGAACCCG 1552
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1390 ACAATCATACATCGTGACCTCAAAGCGGGTAACATCCTCTTGGACGCTGATATGAACCCA 1449
Query 1553 AAAGTTGCAGATTTTGGGACGGCAAGGATCTTTGGGA-TGGACCAAAGTGTAGCT-ATTA 1610
||||||||||||||||| | ||| ||||| ||| | | ||||||||| | ||| || |
Sbjct 1450 AAAGTTGCAGATTTTGGAATGGCGAGGAT-TTTCGAAATGGACCAAACAGAAGCCCAT-A 1507
Query 1611 CAGCGAAT-GCAGCCGGAAC-TCCCGGTTACATGGC-CCCAGAATATATGGAACTA-GGC 1666
| | ||| | || |||||| | ||||||||| | ||| || ||| | | || |||
Sbjct 1508 C-GAGAAGAGTAGTCGGAACCTAT-GGTTACATGTCTCCC-GAGTATGCG-ATGTATGGC 1563
Query 1667 GAATTCTCGATGAAATCTGACGTGTATAGCTATGGG-GTCTTAGTTCTTGAGATTATATG 1725
|||| || ||||||||||| || ||||||| | || ||||||||||||||||| ||| |
Sbjct 1564 CAATTTTCAATGAAATCTGATGTTTATAGCT-TCGGAGTCTTAGTTCTTGAGATAATAAG 1622
Query 1726 CGGCAAGAGGAACA-CGAGCTTCTCATC 1752
||| |||| |||| | ||| ||| |||
Sbjct 1623 CGGGAAGAAAAACAGC-AGCCTCT-ATC 1648
> Ahg889847 jgi|Araly1|889847|Al_scaffold_0007_1833
Length=2025
Score = 254 bits (137), Expect = 3e-66
Identities = 495/661 (75%), Gaps = 52/661 (8%)
Strand=Plus/Plus
Query 1102 ATACAAATTTAAGACGATCGAAACTGCAACAAATAATTTTTC-A-GAG--A-GA-CTTGG 1155
|||| | |||||||| || ||| ||||||| || || ||||| | || | | |||||
Sbjct 1023 ATACGATTTTAAGACAATTGAAGCTGCAACTAACAAGTTTTCAACAAGTAATAAGCTTGG 1082
Query 1156 TCATGGTGGA-TCTGG-ACATGTTTTCAAGGG-AAGGTTGCCTGACGGAAAGGAAATTGC 1212
| | |||||| || || | |||| || ||| ||| || || | |||| ||| | ||
Sbjct 1083 TGAAGGTGGATTC-GGTGC-GGTTTACATGGGTAAGCTT-TCTAATGGAACTGAAGTAGC 1139
Query 1213 AGTGAAGAGATTGTCAGAAAAA-ACAGAACAAAGTAAGAA-AGAGTTCAAGAACGAGGTT 1270
|| ||| || |||| |||||| ||| || ||| | || |||||||| ||| |||| |
Sbjct 1140 TGTAAAGCGACTGTC-GAAAAAGTCAGGAC-AAGGCACAAGAGAGTTCAGGAATGAGGCT 1197
Query 1271 GTTCTTGTCG-CGAAACTTCAGCATAGAAATCTTGTTAGACTTCTCGG-TT-T-TTCTGT 1326
|||||||| | | |||||||| ||||| || || || || ||||| || || | || ||
Sbjct 1198 GTTCTTGT-GTCAAAACTTCAACATAGGAACCTGGTCAGGCTTCTTGGATTCTGTT-TG- 1254
Query 1327 CAAAGGAGAAGAAAAGA-TCATAG-TCTACGAGTATTTG-CC-CAACAGAAGTCTCGACT 1382
||| |||| ||| ||| || | | | || ||| |||| || ||||| ||| || ||||
Sbjct 1255 GAAA-GAGAGGAACAGATTC-T-GATTTATGAG--TTTGTCCACAACAAAAGCCTTGACT 1309
Query 1383 ACATCCTCTTTGACCCTACA-AAGCAAGGAGAGTTAGACTGGAAAAAGCGGTACAAGATC 1441
|| | || || ||||| | |||||| | || ||||||||| | | |||| ||||
Sbjct 1310 ACTTTCTATTCGACCC-GGAGAAGCAAAGTCAGCTAGACTGGACCCGGAGATACAGGATC 1368
Query 1442 ATTGGAGGAACTGCTAGAGGGATTCTATATCTTCATCAAGATTCACAACCCACAATCATA 1501
|||||||| | ||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 1369 ATTGGAGGGATTGCTAGAGGGATTCTATATCTTCATCAAGATTCACGGCTCAAAATCATA 1428
Query 1502 CATCGTGACCTCAAAGCGGGTAATATCCTCTTGGACGCTCATATGAACCCGAAAGTTGCA 1561
|||||||||||||||||| | || || ||||| || || ||||||| |||||| ||||
Sbjct 1429 CATCGTGACCTCAAAGCGAGCAACATTCTCTTAGATGCGGATATGAATCCGAAAATTGCT 1488
Query 1562 GATTTTGGGAC-GGCAAGGATCTTTGGGATGGACCAAAGTGTAGCTATTAC-AGC-GAAT 1618
|||||||| | ||||| || ||||| ||||| |||| | || | || | | ||||
Sbjct 1489 GATTTTGG-ATTGGCAACTATTTTTGGAATGGAGCAAACTCAAGGAAACACGAACAGAAT 1547
Query 1619 GCAGCCGGAAC-TCCCGGTTACATGGC-CCCAGAATAT---ATGGAACTAGG-CGAATTC 1672
|| ||||| | | | ||||||| | ||| || ||| ||| | | || | ||| |
Sbjct 1548 T--GCTGGAACCTAC-GCTTACATGTCTCCC-GAGTATGCGATGCA--T-GGTC-AATAC 1599
Query 1673 TCGATGAAATCTGACGTGTATAGCTATGGGGTCTTAGTTCTTGAGATTATATGCGGCAAG 1732
|| |||||||||||| | ||||||| ||| ||||||||||||||||||||| ||||||||
Sbjct 1600 TCCATGAAATCTGACATTTATAGCTTTGGAGTCTTAGTTCTTGAGATTATAAGCGGCAAG 1659
Query 1733 A 1733
|
Sbjct 1660 A 1660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85131697575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5