BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23220.1
Length=2322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492543 jgi|Araly1|492543|fgenesh2_kg.7__1976__AT4G23220.1 2820 0.0
Ahg889839 jgi|Araly1|889839|Al_scaffold_0007_1825 582 3e-165
> Ahg492543 jgi|Araly1|492543|fgenesh2_kg.7__1976__AT4G23220.1
Length=2409
Score = 2820 bits (1527), Expect = 0.0
Identities = 1890/2062 (92%), Gaps = 37/2062 (2%)
Strand=Plus/Plus
Query 157 TTATTCATACTTACTTGCTGTCCTAACGTAAATATCATCTGTACT-ATCTTGAAAATGGA 215
|||||||||||| |||||| ||| ||| |||||||| ||||| | |||||||||||| |
Sbjct 1 TTATTCATACTTGCTTGCTTTCCAAACCCAAATATCACCTGTA-TGATCTTGAAAATGAA 59
Query 216 ATTGAAGAATCTCTTTCCAATCTTCTGGTTTGTCCTCGTAGGCTTTGCTGTGGTGTCTGC 275
||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 60 ATTGAAGAATCTCTTGCCAATTTTCTGGTTTGTCCTTGTAGGCTTTGCTGTTGTGTCTGC 119
Query 276 ACAAGAATGCGGCAAAACAGGGTTTTTTGTACCACAAAGTAGGTATGAAACAAACCGGGG 335
||||||||| ||||||||||||| |||||||||||| |||||||||| |||||||||||
Sbjct 120 ACAAGAATGTGGCAAAACAGGGTCTTTTGTACCACATGGTAGGTATGACACAAACCGGGG 179
Query 336 CCTTCTCCTCTCTTCTCTTCCTTCCAATGTTTCAGCTCGAGGAGGATTCTACAATTCTTC 395
|||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 180 CCTTATCCTCTCTTCTCTTCCTTCCAATGTTTCAGCTCGAGGCGGCTTCTACAATTCTTC 239
Query 396 GATTGGCCAAGGCCCTGATCGAGTGTATGCTCTGGGGATGTGCATTGAAGGTGCTGAACC 455
|||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 240 GATTGGCCAAGGACCTGATCGAGTGTATGCTTTGGGGATGTGCATTCAAGGTGCTGAACC 299
Query 456 AGATGTTTGCTCCGACTGTATTGAATATGCTTCTAATCTGTTATTAGACACGTGTCTCAA 515
|||||| |||||| ||||| |||||||||| |||||||||||| || || ||||| |||
Sbjct 300 AGATGTATGCTCCAACTGTGTTGAATATGCGTCTAATCTGTTACTAAACGGGTGTCCCAA 359
Query 516 CCAGACAGAAGGCCTGGCCTGGCCGGAGAA-ACGGATTTTGTGTATGGTACGATACTCCA 574
|||||||||||| || || |||||||| || ||||||||| |||||||| |||||||| |
Sbjct 360 CCAGACAGAAGGGCTTGCTTGGCCGGA-AAGACGGATTTTATGTATGGTGCGATACTCTA 418
Query 575 ATAGTTCtttttttGGATCACTCAAGGCAGAACCGCATTTCTATATCCACAA-CGTGGAT 633
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 419 ATAGTTCTTTTTTTGGATCACTCAAGGCAGAACCGCATTTCTATATCCACAATC-AGGAT 477
Query 634 GATATTACATCCAATTTAACAGAGTTTGATCAAGTGTGGGAAGAGTTAGCACGTCGTATG 693
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GATATCAGATCCAATTTAACAGAGTTTGATCAAGTGTGGGAAGAGTTAGCACGTCGTATG 537
Query 694 ATAGCTAGTACTACTTCTCCATCATCTAAACGCAAGTACTACGCAGCAGACGTAGCAGCC 753
||||| | ||||||||| |||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 538 ATAGCAAATACTACTTCACCATCATCTAAAAGCAAGTACTACGCAGCTGACATAGCAGCC 597
Query 754 TTGACAGCTTTCCAGATAATATATGCACTAATGCAATGCACTCCGGACTTATCTTTGGAG 813
||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 TTGACAGATTTCCAGATTATATATGCATTAATGCAATGCACTCCGGACTTATCTTTGGAG 657
Query 814 GATTGCCATATCTGTTTAAGACAAAGTGTTGGTGACTATGAAACATGCTGCAATGGAAAG 873
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 658 GATTGCCATATCTGTTTAAGACAAAGTGTTGGTGACTATGAATCATGCTGCAATGGAAAG 717
Query 874 CAAGGTGGCATTGTGTACCGAGCCAGCTGTGTTTTCCGGTGGGAGCTTTTTCCCTTCTCT 933
||||||||||||||||||||||||||||| ||||| |||||||| || | || ||||||
Sbjct 718 CAAGGTGGCATTGTGTACCGAGCCAGCTGCGTTTTTCGGTGGGAACTGTGGCCTTTCTCT 777
Query 934 GAGGCTTTTAGTCGTATTTCGTTGGCACCTCCGCCTCAATCCCCAGC-ATT-TCCCACGC 991
||||||||||||||||||||||||||||||||||||| |||||||| ||| || ||| |
Sbjct 778 GAGGCTTTTAGTCGTATTTCGTTGGCACCTCCGCCTCCATCCCCAGTGATTCTCTCAC-C 836
Query 992 TTCCGGCAGT-AAC----CAA-TACAGCGACCAAGAAAGGTAGCATAACAATCTCGATAG 1045
| ||||||| ||| ||| |||| |||||||||||||||||||||||||||| ||||
Sbjct 837 T-CCGGCAGGCAACAAGACAAATACAACGACCAAGAAAGGTAGCATAACAATCTCAATAG 895
Query 1046 GAATTGTCTGG-GCAATCATTATTCCTACTGTCATTGTTGTCTTCTTGGTACTGCTTGCG 1104
|||| | || |||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 896 GAATCATA-GGCGCAATCGTTATTCCTACTGTCATTATTATCTTCTTGGTACTGCTTGCG 954
Query 1105 CTAGGATTTGTTGTTTATAGGAGGAGGAAATCATACCAAGGATCCAGCACTGATATCACC 1164
|||||||||||||||||||||||||| |||| |||||||||||| || ||||||||||||
Sbjct 955 CTAGGATTTGTTGTTTATAGGAGGAGAAAATTATACCAAGGATCTAGTACTGATATCACC 1014
Query 1165 ATTACACACTCACTGCAATTCGATTTCAAAGCGATTGAAGATGCAACAAATAAATTCTCG 1224
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1015 ATTACACACTCACTCCAATTCGATTTCAAAGCGATTGAAGATGCAACAAATAAATTCTTG 1074
Query 1225 GAGAGCAACATAATTGGTCGCGGTGGATTTGGAGAAGTTTTCATGGGTGTCCTTAACGGT 1284
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1075 GAGAGCAACATAATTGGTCGCGGTGGATTTGGAGAAGTTTTCAAGGGTGTGCTTAACGGC 1134
Query 1285 ACTGAAGTTGCAATTAAGAGGCTGTCAAAAGCATCGAGACAAGGTGCACGAGAATTCAAA 1344
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1135 ACAGAAGTTGCAATTAAGAGGCTGTCAAAAGCATCGAGACAAGGTGCACGAGAGTTCAAG 1194
Query 1345 AATGAGGTTGTTGTTGTTGCAAAACTCCATCATAGGAATCTTGTTAAGCTTCTCGGGTTT 1404
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1195 AATGAGGTTGTTGTTGTTGCTAAACTCCAACATAGGAATCTTGTTAAGCTTCTCGGGTTT 1254
Query 1405 TGTCTAGAAGGAGAAGAGAAAATACTTGTTTACGAGTTTGTCCCCAACAAGAGCCTCGAC 1464
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TGTCTAGAAGGAGATGAGAAGATACTTGTTTACGAGTTTGTCCCCAACAAGAGCCTCGAT 1314
Query 1465 TACTTCCTCTTTGACCCTACAAAGCAAGGGCAGTTAGACTGGACTAAACGATACAACATT 1524
| |||||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||
Sbjct 1315 TTCTTCCTCTTTGACCCTACCAAGCAAGGACAGTTAGACTGGAAAAAACGTTACAACATT 1374
Query 1525 ATCCGGGGAATCACTCGAGGAATTCTGTATCTTCATCAAGACTCACGGCTCACGATCATA 1584
|||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct 1375 ATCCGGGGAATCACTCGAGGAATTCTATATCTCCATCAAGACTCACGGCTTACAATCATA 1434
Query 1585 CATCGTGACCTCAAAGCCAGCAACATTCTCCTAGATGCAGATATGAACCCAAAAATTGCT 1644
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1435 CATCGTGACCTCAAAGCCAGCAATATTCTCCTAGATGCTGATATGAATCCAAAAATTGCT 1494
Query 1645 GATTTTGGAATGGCGAGAATTTTTGGGATCGATCAAAGTGGAGCTAATACaaaaaaaaTA 1704
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GATTTTGGAATGGCTAGAATTTTTGGGATCGATCAAAGTGGAGCTAATACAAAAAAAATA 1554
Query 1705 GCTGGGACACGCGGTTACATGCCTCCAGAATATGTGAGGCAAGGTC-AGTTCTCAACAAG 1763
| ||||||||||||||||||||||||||||||||||| ||| || | | ||||||||||
Sbjct 1555 GTTGGGACACGCGGTTACATGCCTCCAGAATATGTGATGCATGGCCTA-TTCTCAACAAA 1613
Query 1764 ATCAGATGTTTATAGTTTCGGAGTCTTAGTTCTTGAGATTATATGTGGTCGAAATAACAG 1823
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 ATCTGATGTCTATAGTTTTGGAGTCTTAGTTCTTGAGATTATATGTGGTCGAAATAACAG 1673
Query 1824 ATTCATCCACCAGTCAGACACTACAGTTGAGAATTTGGTCACATACGCTTGGAGGTTGTG 1883
|||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 1674 ATTCGTCCACCAGTCAGACACCACAGTTGAGAATTTGGTGACATACGCTTGGAGGTCGTG 1733
Query 1884 GAGAAACGATTCACCATTAGAACTCGTGGATCCAACCATTTCGGAGAATTGTGAAACCGA 1943
|||||||| |||||||| ||| | ||||||||||||||||| ||||||||||| |||||
Sbjct 1734 GAGAAACGGCTCACCATTGGAAATGGTGGATCCAACCATTTCAGAGAATTGTGACACCGA 1793
Query 1944 AGAAGTGACAAGATGCATCCACATTGCGTTGCTGTGTGTTCAACACAATCCCACAGATCG 2003
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1794 AGAAGTGACAAGATGCATCCACATTGCACTGCTATGTGTTCAACACAATCCCACAGATCG 1853
Query 2004 CCCCAGCTTGTCGACAATCAACATGATGCTCA-TAAACAATTCGTATGTTTTACCTGATC 2062
|||||||||||||||||| |||||||||||| ||| ||||| || || |||||||||
Sbjct 1854 TCCCAGCTTGTCGACAATCTACATGATGCTCACTAAT-AATTCCCATATTCTACCTGATC 1912
Query 2063 CTCAACAACCTGGATTCTTCTTTCCA-ATAATAAGCAACCAAGAACGAGATGGCCTCGAC 2121
|||||||||||||||||| ||||||| |||| |||||||||||||| ||||||| ||||
Sbjct 1913 CTCAACAACCTGGATTCTACTTTCCAGATAA-AAGCAACCAAGAACAAGATGGCATCGAG 1971
Query 2122 TCTA-----T----GAACAGGTCCAAT-CCACAAACTATCAATGATGTAACCATTACAGA 2171
|||| | ||||| ||||||| || |||||||||||||||||||||||||||||
Sbjct 1972 TCTAGCCAGTCTACGAACAAGTCCAATTCC-CAAACTATCAATGATGTAACCATTACAGA 2030
Query 2172 TTTTGAACCTCGTTGAAG-TTG 2192
| |||||||||||| ||| |||
Sbjct 2031 TCTTGAACCTCGTT-AAGCTTG 2051
Score = 370 bits (200), Expect = 3e-101
Identities = 295/337 (88%), Gaps = 21/337 (6%)
Strand=Plus/Plus
Query 1870 GCTTGGAGGTTGTGGAGAAACGATTCACCATTAGAACTCGTGGATCCAACCATTTCGGAG 1929
|||||||||||||||||||||| |||| | |||||||||||||||||| |||||| |||
Sbjct 2047 GCTTGGAGGTTGTGGAGAAACGGGTCACTACTAGAACTCGTGGATCCAATCATTTCAGAG 2106
Query 1930 AATTGTGAAACCGAAGAAGTGACAAGATGCATCCACATTGCGTTGCTGTGTGTTCAACAC 1989
||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 2107 AATTGTGAAACTGAAGAAGTGACAAGATGCATCCACATTGCGCTGCTATGTGTTCAACAC 2166
Query 1990 AATCCCACAGATCGCCCCAGCTTGTCGACAATCAACATGATGCTCA-TAAACAATTCG-T 2047
||||||||||||||||||||||||||||||||| |||||||| ||| | | |||||| |
Sbjct 2167 AATCCCACAGATCGCCCCAGCTTGTCGACAATCCACATGATGTTCACTCA-CAATTCCCT 2225
Query 2048 ATGTTTTACCTGATCCTCAACAACCTGGATTCTTCTTTCCAATAATA-A-GCAACCAAGA 2105
| ||| |||||||||||||||||||||||| |||||||||| | || | ||||||||||
Sbjct 2226 TTATTT-ACCTGATCCTCAACAACCTGGATTTTTCTTTCCAA-A-TAGACGCAACCAAGA 2282
Query 2106 ACGAGATGGCCTCGA------C---TCTATGAACAGGTCCAAT-CCACAAACTATCAATG 2155
||||||||||||||| | |||| |||| |||||||| || |||||||||||||
Sbjct 2283 ACGAGATGGCCTCGATTTTAGCCAGTCTACGAACCGGTCCAATTCC-CAAACTATCAATG 2341
Query 2156 ATGTAACCATTACAGAT-TTTGAACCTCGTTGAAGTT 2191
|||||||||||||||| ||| | ||||||||| |||
Sbjct 2342 ATGTAACCATTACAGAGCTTT-ATCCTCGTTGAGGTT 2377
> Ahg889839 jgi|Araly1|889839|Al_scaffold_0007_1825
Length=1506
Score = 582 bits (315), Expect = 3e-165
Identities = 431/485 (89%), Gaps = 15/485 (3%)
Strand=Plus/Plus
Query 1715 GCGGTTACATGCCTCCAGAATATGTGAGGCAAGGTCAGTTCTCAACAAGATCAGATGTTT 1774
||||||||||||| ||||||||||||| ||| || || |||||||||| ||| ||||| |
Sbjct 1025 GCGGTTACATGCCCCCAGAATATGTGATGCATGGCCAATTCTCAACAAAATCTGATGTAT 1084
Query 1775 ATAGTTTCGGAGTCTTAGTTCTTGAGATTATATGTGGTCGAAATAACAGATTCATCCACC 1834
||||||| ||||| |||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct 1085 ATAGTTTTGGAGTATTAGTTCTTGAGATTATATGCGGTCAAAATAACAGATTCGTCCACC 1144
Query 1835 AGTCAGACACTACAGTTGAGAATTTGGTCACATACGCTTGGAGGTTGTGGAGAAACGATT 1894
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 AGTCAGACACTACAGTTGAGAATTTGGTCACATACGCTTGGAGGTTGTGGAGAAACGGGA 1204
Query 1895 CACCATTAGAACTCGTGGATCCAACCATTTCGGAGAATTGTGAAACCGAAGAAGTGACAA 1954
||||||| ||||||||||||||| | ||| | || |||||||||||||| ||||||| ||
Sbjct 1205 CACCATTGGAACTCGTGGATCCAGCTATTGCAGATAATTGTGAAACCGAGGAAGTGATAA 1264
Query 1955 GATGCATCCACATTGCGTTGCTGTGTGTTCAACACAATCCCACAGATCGCCCCAGCTTGT 2014
| |||||||||||||| | || ||||||||||||| |||||| ||||| ||||||||||
Sbjct 1265 GCTGCATCCACATTGCACTACTATGTGTTCAACACAGTCCCACTGATCGTCCCAGCTTGT 1324
Query 2015 CGACAATCAACATGATGCTCA-TAAACAATTCGTATGTTTTACCTGATCCTCAACAACCT 2073
|||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1325 CGACAATCAACATGCTGCTCACTAA-CAATTCGTATGTTTTACCTGATCCTCAACAACCT 1383
Query 2074 GGATTCTTCTTTCCAA-TAATAAGCAACCAAGAACGAGATGGCCTCGACTCTA-----T- 2126
|||||||||||||||| ||| ||||||| ||||||||||||||||||| |||| |
Sbjct 1384 GGATTCTTCTTTCCAAATAA-AAGCAACAAAGAACGAGATGGCCTCGAGTCTAGCCAGTC 1442
Query 2127 ---GAACAGGTCCAAT-CCACAAACTATCAATGATGTAACCATTACAGATTTTGAACCTC 2182
||||||||| | | || ||||||||||||||||||||||| |||||| |||||||||
Sbjct 1443 TACGAACAGGTCTAGTTCC-CAAACTATCAATGATGTAACCATCACAGATCTTGAACCTC 1501
Query 2183 GTTGA 2187
|||||
Sbjct 1502 GTTGA 1506
Score = 464 bits (251), Expect = 1e-129
Identities = 431/512 (84%), Gaps = 36/512 (7%)
Strand=Plus/Plus
Query 1206 TGCAACAAATAAATTCTCGGAGAGCAACATAATTGGTCGCGGTGGATTTGGAGAAGTTTT 1265
||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 483 TGCAACAAACAAATTCTCGGAGAGCAATATAATTGGCCGTGGTGGATTTGGAGAAGTTTT 542
Query 1266 CATGGGTGTCCTTAACGGTACTGAAGTTGCAATTAAGAGGCTGTCAAAAGCATCGAGACA 1325
|| || |||||| ||||| |||||||||||||||||||||||||||||| |||| | |||
Sbjct 543 CAAGGCTGTCCTCAACGGGACTGAAGTTGCAATTAAGAGGCTGTCAAAATCATCAA-ACA 601
Query 1326 AGGTGCACGA-GAATTCAAAAATGAGGTTGTTGTTGTTGCAAAACTCCATCATAGGAATC 1384
|||||||| | || ||||| || |||| | ||||| | || | || || |
Sbjct 602 AGGTGCAC-ATGAGTTCAAGAACGAGGAA-TC-TTGTT--AGG-CTTC-TC---GG--T- 648
Query 1385 TTGTTAAGCTTCTCGGGTTTTGTCTAGAAGGAGAAGAGAAAATACTTGTTTACGAGTTTG 1444
|| || | || | || | ||||| | || ||| ||||||||||||||||||
Sbjct 649 TT-TT--G-TT-T-GGAAG--G---AGAAG-A-AA-AGA---TACTTGTTTACGAGTTTG 691
Query 1445 TCCCCAACAAGAGCCTCGACTACTTCCTCTTTGACCCTACAAAGCAAGG-GCAGTTAGAC 1503
| ||||||||||||||| | ||||||||||||||||| | |||||||| | ||||||||
Sbjct 692 TGCCCAACAAGAGCCTCAATTACTTCCTCTTTGACCCAATGAAGCAAGGAG-AGTTAGAC 750
Query 1504 TGGACTAAACGATACAACATTATCCGGGGAATCACTCGAGGAATTCTGTATCTTCATCAA 1563
||||| ||||| ||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct 751 TGGACAAAACGGTACAACATTATCCTAGGAATCACTCGAGGAATTTTATATCTTCATCAA 810
Query 1564 GACTCACGGCTCACGATCATACATCGTGACCTCAAAGCCAGCAACATTCTCCTAGATGC- 1622
|| ||| ||||||| |||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 811 GATTCAAGGCTCACAATCATACACCGTGATCTCAAAGCCAGCAACATTCTTCTAGATGCC 870
Query 1623 AGATATGAACCCAAAAATTGCTGATTTTGGAATGGCGAGAATTTTTGGGATCGATCAAAG 1682
| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 871 A-ATATGAACCCAAAAATTGCTGATTTTGGAATGGCGAGAATATTTGGGATCGACCAAAG 929
Query 1683 TGGAGCTAATACaaaaaaaaTAGCTGGGACAC 1714
||||||||||||||| | ||||||||| ||||
Sbjct 930 TGGAGCTAATACAAACAGAATAGCTGGAACAC 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87455202520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5