BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23240.1
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889845 jgi|Araly1|889845|Al_scaffold_0007_1831 1363 0.0
Ahg889841 jgi|Araly1|889841|Al_scaffold_0007_1827 564 5e-160
Ahg492542 jgi|Araly1|492542|fgenesh2_kg.7__1975__AT4G23260.1 538 3e-152
Ahg895327 jgi|Araly1|895327|Al_scaffold_0006_3323 326 3e-88
> Ahg889845 jgi|Araly1|889845|Al_scaffold_0007_1831
Length=1983
Score = 1363 bits (738), Expect = 0.0
Identities = 961/1066 (90%), Gaps = 25/1066 (2%)
Strand=Plus/Plus
Query 11 CTGCAGATGATATTACAACTTCAGGTTCACTTCAATTCGATTTTAAAGCAATTGAAGCTG 70
|||||||||||| | |||| |||||||||||||||||||| |||||||| ||| ||||||
Sbjct 926 CTGCAGATGATACTGCAACATCAGGTTCACTTCAATTCGAATTTAAAGCTATTCAAGCTG 985
Query 71 CAACAAATAATTTTCAGAAGAGTAACAAGCTTGGTCATGGTGGATTTGGT---G-----A 122
||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 986 CAACAAATAATTTTCAGAAGAGTAACAAGCTAGGTCATGGTGGATTTGGTGAAGTTTACA 1045
Query 123 A-GGAACTTTTCCGAATGGAACAGAAGTTGCTGTGAAGAGGCTGTCTAAAATTTCAGGTC 181
| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1046 AGGGAACGTTTCCGAATGGAACAGAAGTTGCTGTGAAGAGGCTGTCTAAAACTTCAGGTC 1105
Query 182 AAGGTGAAGAAGAGTTTAAGAACGAGGTGCTTCTTGTAGCAAAGCTCCAACATAGAAATC 241
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 AAGGTGAACAAGAGTTTAAGAACGAGGTGCTTCTTGTAGCAAAGCTCCAACATAGAAATC 1165
Query 242 TCGTTAGACTTCTGGGGTTCTCTGTTGAAGGAGAAGAAAAGATACTTGTCTACGAGTATA 301
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1166 TCGTTAGACTTCTCGGGTTCTCTGTCGAAGGAGAAGAAAAGATACTTGTCTACGAGTTTG 1225
Query 302 TGC-CAAATAAAAGTCTTGACTATTTTCTCTTTGACCATAG-AAGGAGGGGTCAGCTGGA 359
||| ||| ||||||||||||||| || |||||||||| | | || ||||||||| || ||
Sbjct 1226 TGCACAA-TAAAAGTCTTGACTACTTCCTCTTTGACCCT-GTAAAGAGGGGTCAACTTGA 1283
Query 360 TTGGAGAACACGATACAACATAATC-AGGGGAGTGACTCGAGGGATTTTATATCTCCATC 418
|||||||| ||| || ||||| ||| |||| | | |||||||||||||||||||| ||||
Sbjct 1284 TTGGAGAAAACGCTATAACATTATCGAGGGAATT-ACTCGAGGGATTTTATATCTTCATC 1342
Query 419 AAGATTCACGGCTTACAATCATACACCGTGACCTCAAAGCGGGTAACATTCTCTTAGATG 478
||||||||||||| ||||||||||| ||||||||||||||| |||||||||| || ||||
Sbjct 1343 AAGATTCACGGCTCACAATCATACATCGTGACCTCAAAGCGAGTAACATTCTATTGGATG 1402
Query 479 TC-GATATGAACCCGAAAATCGCGGATTTTGGTGTGGCTAGGAATTTTAGAGTGGACCAA 537
| |||||||||||||||||||| |||||||| |||| |||||||| |||||||||||
Sbjct 1403 -CAGATATGAACCCGAAAATCGCAGATTTTGGAATGGCAAGGAATTTCAGAGTGGACCAG 1461
Query 538 ACTGAAG-CTACCACAGGAAGAGTAGTTGGAACATTCGGTTACATGCCTCCCGAATATGT 596
||||||| | | ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1462 ACTGAAGACAAT-ACAGGAAGAGTAGTTGGAACATTTGGTTACATGCCTCCCGAGTATGT 1520
Query 597 GGCGAACGGGCAGTTCTCGATGAAATCTGATGTTTATAGTTTTGGAGTATTGATTCTGGA 656
|||||| ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||
Sbjct 1521 GGCGAATGGGCAGTTCTCGATGAAATCTGATGTTTATAGTTTCGGAGTAATGACTCTGGA 1580
Query 657 GATTATTGTTGGCAAAAAGAGTAGTAGCTTCCATGAGATTGATGGTTCAGTAGGAAACTT 716
||||||||||||||||||||||||||||||||| |||| ||| |||||||||| ||| |
Sbjct 1581 GATTATTGTTGGCAAAAAGAGTAGTAGCTTCCACCAGATAGATAGTTCAGTAGGCAACCT 1640
Query 717 GGTCACATATGTTTGGAGGCTTTGGAACAACGAATCATT-CTTGGAACTTGTAGACCCGG 775
|||||||||||||||||||||||||||||||| ||||| || |||||| |||||||||
Sbjct 1641 GGTCACATATGTTTGGAGGCTTTGGAACAACGGATCATCGCT-GGAACTCATAGACCCGG 1699
Query 776 CCATGGGGGAGAGTTATGATAAAGATGAAGTCATCAGATGCATCCATATAAGCTTATTGT 835
|||||||||||| ||| ||||||||||||||||| ||||||||||| || | |||||||
Sbjct 1700 CCATGGGGGAGAATTACGATAAAGATGAAGTCATTAGATGCATCCACATCGGGTTATTGT 1759
Query 836 GCGTTCAAGAAAATCCTGCAGATCGTCCAACAATGTCCACA-GTGTTTCAGATGCTCACT 894
||||||||||||||||||||||||||||||| ||||||| | || |||||||||||||||
Sbjct 1760 GCGTTCAAGAAAATCCTGCAGATCGTCCAACCATGTCCA-ATGTTTTTCAGATGCTCACT 1818
Query 895 AATACTTTTCTTACTCTGCCCGTGCCTCAATTACCTGGATTTGTTTTCAGGGTCAGATCC 954
|||| || | ||||||||||| |||||| |||||||||||| |||||||||||||||
Sbjct 1819 AATAATTCAATCACTCTGCCCGTCCCTCAAACACCTGGATTTGTCTTCAGGGTCAGATCC 1878
Query 955 GAGCCAAACCCATTAGCCGAGAGACT-TGAGCCTGGTCCGTCTACTACCATGTCGTTTGC 1013
||||||||||||||||| |||||| | | ||||||||||||||||| |||||||||||||
Sbjct 1879 GAGCCAAACCCATTAGCTGAGAGA-TATCAGCCTGGTCCGTCTACTGCCATGTCGTTTGC 1937
Query 1014 TTGTTCCATTGATGATGCATCGATCACGAGTGTTGATCTTCGTTGA 1059
|||||| ||||||||||||||||||||||||||| ||| |||||||
Sbjct 1938 TTGTTCTATTGATGATGCATCGATCACGAGTGTTAATCCTCGTTGA 1983
> Ahg889841 jgi|Araly1|889841|Al_scaffold_0007_1827
Length=591
Score = 564 bits (305), Expect = 5e-160
Identities = 355/379 (94%), Gaps = 4/379 (1%)
Strand=Plus/Plus
Query 683 GCTTCCATGAGATTGATGGTTCAGTAGGAAACTTGGTCACATATGTTTGGAGGCTTTGGA 742
||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 215 GCTTCCACCAGATAGATGGTTCAGTAGGCAACTTGGTCACATATGTTTGGAGGCTTTGGA 274
Query 743 ACAACGAATCATTCTTGGAACTTGTAGACCCGGCCATGGGGGAGAGTTATGATAAAGATG 802
||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 275 ACAACAAATCTTTCTTGGAACTCGTAGACCCGGCCATGGGGGAGAGTTATGATAAAGATG 334
Query 803 AAGTCATCAGATGCATCCATATAAGCTTATTGTGCGTTCAAGAAAATCCTGCAGATCGTC 862
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 335 AAGTGATCAGATGCATCCATATAAGCTTATTGTGCGTTCAAGAAAATCCTGTAGATCGTC 394
Query 863 CAACAATGTCCACAGTGTTTCAGATGCTCACTAATACTTTTCTTACTCTGCCCGTGCCTC 922
|||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 CAACCATGTCCACATTATTTCAGATGCTCACTAATACTTTTCTTACTCTGCCCGTGCCTC 454
Query 923 AATTACCTGGATTTGTT-TTCAGGGTCAGATCCGAGCCAAACCCATTAGCCGAGAGACTT 981
||| ||||||| || || |||||||||||||||||||||||| |||||||||||||| ||
Sbjct 455 AATCACCTGGAGTT-TTCTTCAGGGTCAGATCCGAGCCAAACTCATTAGCCGAGAGA-TT 512
Query 982 G-AGCCTGGTCCGTCTACTACCATGTCGTTTGCTTGTTCCATTGATGATGCATCGATCAC 1040
| | ||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 513 GGACCCTGGTCCGTCTAATACCATGTCGTTTGCTTATTCCATTGATGATGCGTCGATCAC 572
Query 1041 GAGTGTTGATCTTCGTTGA 1059
||||||| |||||||||||
Sbjct 573 GAGTGTTAATCTTCGTTGA 591
> Ahg492542 jgi|Araly1|492542|fgenesh2_kg.7__1975__AT4G23260.1
Length=1990
Score = 538 bits (291), Expect = 3e-152
Identities = 607/756 (80%), Gaps = 36/756 (5%)
Strand=Plus/Plus
Query 135 GAATGGAACAGAAGTTGCTGTGAAGAGGCTGTCTAAAATTTCAGGTCAAGGTGAAGAAGA 194
|||||| || ||| |||| || ||||| |||| |||| ||||| |||||||||| |||
Sbjct 1066 GAATGGCACTGAAATTGCGGTAAAGAGATTGTCGAAAACATCAGGACAAGGTGAAGTAGA 1125
Query 195 GTTTAAGAACGAGG-TGCTTCTTGTAGCAAAGCTCCAACATAGAAATCTCGTTAGACTTC 253
||| |||||||||| || || |||| |||||||| ||||| | |||||||||||||||||
Sbjct 1126 GTTCAAGAACGAGGTTG-TTGTTGTTGCAAAGCTTCAACACATAAATCTCGTTAGACTTC 1184
Query 254 TGGGGTTCTCTG-TTGAAGGAGAAGAAAAGATACTTGTCTACGAGTATATGCCAAATAAA 312
| || || || | | |||||||||| ||| |||| || || |||| | | |||| |||
Sbjct 1185 TCGGTTTTTC-GCTACAAGGAGAAGAGAAGTTACTCGTATATGAGTTTGTTTCAAACAAA 1243
Query 313 AGTCTTGACTATTTTCTCTTTGA-CCATA-GAAGGAGGGGTCAGCTGGATTGGAGAACAC 370
|| || || ||||| |||||||| || || ||| ||| |||| |||| |||| || |
Sbjct 1244 AGCCTCGATTATTTCCTCTTTGATCC-TACGAA-GAGAAATCAGTTGGACTGGACAATGC 1301
Query 371 GATACAACATAATCAG-GGGAGTGACTCGAGGGATTTTATATCTCCATCAAGATTCACGG 429
|| ||| || ||| | |||| | |||||||||||||||||||| |||||||||||||||
Sbjct 1302 GACGCAATATCATCGGTGGGA-TTACTCGAGGGATTTTATATCTTCATCAAGATTCACGG 1360
Query 430 CTTACA-ATCATACACCGTGACCTCAAAGCGGGTAACATTCTCTTAGATGTC-GATATGA 487
|| | | |||||||| ||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 1361 CTGA-AGATCATACATCGTGACCTCAAAGCGAGTAACATTCTCTTAGATG-CTGATATGA 1418
Query 488 ACCCGAAAATCGCGGATTTTGGTGTGGCTAGGAAT-TTTAGAGTGGACCAAACTGAAGCT 546
| |||||||| || |||||||| |||| ||| || ||| ||||||||||||||| |||
Sbjct 1419 ATCCGAAAATTGCTGATTTTGGAATGGCAAGG-ATCTTTGGAGTGGACCAAACTGTAGCC 1477
Query 547 ACCACAGGAAGAGTAGTTGGAACATTCGGTTACATGCCTCCCGAATATGTGGCGA-ACGG 605
| |||| ||||||||||||||| |||||||||||| ||||||| |||||| | | | ||
Sbjct 1478 AATACAGCAAGAGTAGTTGGAACCTTCGGTTACATGTCTCCCGAGTATGTGAC-ACATGG 1536
Query 606 GCAGTTCTCGATGAAATCTGATGTTTATAGTTTTGGAGTATTGATTCTGGAGATTATT-G 664
|| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||| ||| |
Sbjct 1537 CCAATTCTCGATGAAATCAGATGTGTATAGCTTTGGAGTATTGATTCTTGAGATCATTAG 1596
Query 665 TTGGCAAAAAGAGTAGTAGCTTCCATGAGATTGATGGTTCAG-TAGGA-AACTTGGTCAC 722
||||||||||| ||| |||||| | |||| ||||||| || || | || || |||||
Sbjct 1597 -TGGCAAAAAGAATAGCAGCTTCTACCAGATGGATGGTTTAGTTA--ACAATTTAGTCAC 1653
Query 723 ATATGTTTGGAGGCTTTGGAACAACGAATCATT-CTTGGAACTTGTAGA-CCCGGCCAT- 779
|||||| |||| |||||| | ||| ||||||| | | || || |||| ||| | ||
Sbjct 1654 ATATGTCTGGAAACTTTGGGAGAACAAATCATTGCAT-GAGCTCATAGATCCC-GTTATC 1711
Query 780 GGGGGAGAGTTATGATAAA--GATGAAGTCATCAGATGCATCCATA-TAAGCTTATTGTG 836
| ||| || | | ||| ||||||||||| |||| ||| |||| | || | || ||
Sbjct 1712 AAAGAAGA-TTGT-A-AAAGCGATGAAGTCATTAGATACATTCATATTGGGC-TGTTATG 1767
Query 837 CGTTCAAGAAAATCCTGCAGATCGTCCAACAATGTC 872
|||||||||||||||||||||||||||||||||||
Sbjct 1768 TGTTCAAGAAAATCCTGCAGATCGTCCAACAATGTC 1803
> Ahg895327 jgi|Araly1|895327|Al_scaffold_0006_3323
Length=1965
Score = 326 bits (176), Expect = 3e-88
Identities = 578/765 (76%), Gaps = 55/765 (7%)
Strand=Plus/Plus
Query 21 TATTACAACTTCAGGTTCACTTCAATTCGATTTTAAAG-CAATTGAAGCTGCAACAAATA 79
|||| ||||| || |||||| |||| ||| | | ||| ||||| | ||||||||| ||
Sbjct 954 TATTCCAACTACATATTCACTGCAATACGA-TCTGAAGACAATTCAGGCTGCAACATGTA 1012
Query 80 -ATTTTCAGAAGAGTAACAAGCTTGGTCATGGTGGATTTGGTGAAG----GAA--CTTT- 131
||||||| ||||| || | ||| ||||| ||||||||||| |||| || |||
Sbjct 1013 CATTTTCA-AAGAGCAATATGCTCGGTCAAGGTGGATTTGGAGAAGTTTTCAAGGGTTTA 1071
Query 132 -TCCGA-ATGGAACAGAAGTTGCTGTGAAGAGGCTGTCTAAAA-TTTCAGGTCAAGGTGA 188
| | | | || ||||| |||| ||||||||||| || |||| |||| ||||| |
Sbjct 1072 CTTCAAGACGGGTCAGAAATTGCGGTGAAGAGGCTATC-AAAAGAATCAGCACAAGGAGT 1130
Query 189 AGAAGAGTTTAAGAACGAG-GTGCTTCTTGTAGCAAAGCTCCAACATAGAAATCTCGTTA 247
| ||||||| ||||| ||| || ||| || |||||||| || || |||||| | |||
Sbjct 1131 ACAAGAGTTCAAGAATGAGAGT-AGTCTCGTGGCAAAGCTTCAGCACAGAAATTTGGTTG 1189
Query 248 GACTTCTGGGGTTCTCTGT-T-GAAGGAGAAGAAAAGATACTTGTCTACGAGTATATGCC 305
|| |||| ||||| | ||| | |||||||||||||||||||| || ||||||| | | ||
Sbjct 1190 GAGTTCTCGGGTT-T-TGTATGGAAGGAGAAGAAAAGATACTCGTTTACGAGTTTGTTCC 1247
Query 306 AAATAAAAGTCTTGACTATTTTC-TCTTTG-ACCATA-GAAGGAGGGGTCAGCTGGATT- 361
|| ||||| || ||| | ||| | |||| ||| || ||| | || || |||||||
Sbjct 1248 TAACAAAAGCCTCGACCA-GTTCTTGTTTGAACC-TACAAAGCA-AGGCCAACTGGATTG 1304
Query 362 GGAGAACACGATACAACATAATCAG-GGGAGTGACTCGAGGGATTTTATATCTCCATCAA 420
|| ||| ||| ||||| || || | |||| || || |||| ||| ||||||| |||||
Sbjct 1305 GGCGAA-ACGGTACAAGATTATTGGTGGGACTG-CTAGAGGAATTCTATATCTTCATCAT 1362
Query 421 GATTCACGGCTTACAATCATACACCGTGACCTCAAAGCGGGTAACATTCTCTTAGATGTC 480
|| |||| || | |||||||||||||||||||||||| ||||||| |||||||||| |
Sbjct 1363 GACTCACCTCTCAAAATCATACACCGTGACCTCAAAGCTAGTAACATCCTCTTAGATG-C 1421
Query 481 -GATAT-GAACCCGAAAATCGCGGATTTTGGTGTGGCTAGGAATTTT-AGAGTGGACCAA 537
|| || |||||| ||| | || |||||||| |||| ||| ||||| || || || |||
Sbjct 1422 TGAAATGGAACCC-AAAGTTGCAGATTTTGGAATGGCAAGG-ATTTTGAGGGTAGATCAA 1479
Query 538 --ACTGAAGCT-ACCAC-AGGAAGAGTAGTTGGAACAT-TCGGTTACATGCCTCCCGAAT 592
|| | |||| | || | | |||||||||||||| | | || |||||| |||| || |
Sbjct 1480 TCAC-G-AGCTGA-TACAAAG-AGAGTAGTTGGAACCTAT-GGCTACATGTCTCCAGAGT 1534
Query 593 ATGTGGCGAACGGGCAGTTCTCGATGAAATCTGATGTTTATAGTTTTGGAGTATTGATTC 652
|| || | | ||||| |||||||||||||||||||||||||||||||| || ||| |||
Sbjct 1535 ATTTGATGCATGGGCAATTCTCGATGAAATCTGATGTTTATAGTTTTGGGGTCTTGGTTC 1594
Query 653 TGGAGATTATT-GTTGGCAAAAAGAGT-AGTAGCTTCCATGAGATTGATGGTTCAGT-AG 709
| ||||| || | || ||||||| || | |||||| || | ||||| ||| | |
Sbjct 1595 TTGAGATAATAAGC-GG-AAAAAGAAACAGCAACTTCCACGAAACTGATGATTCCGGCAA 1652
Query 710 GAAACTTGGTCACATATGTTTGGAGGCTTTGGA-ACAACGAATCA 753
||| |||||||||| ||| ||||| || ||||| | |||| ||||
Sbjct 1653 GAA-CTTGGTCACACATGCTTGGAAGCATTGGAGA-AACGGATCA 1695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39419096178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5