BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G23240.1 Length=1059 Score E Sequences producing significant alignments: (Bits) Value Ahg889845 jgi|Araly1|889845|Al_scaffold_0007_1831 1363 0.0 Ahg889841 jgi|Araly1|889841|Al_scaffold_0007_1827 564 5e-160 Ahg492542 jgi|Araly1|492542|fgenesh2_kg.7__1975__AT4G23260.1 538 3e-152 Ahg895327 jgi|Araly1|895327|Al_scaffold_0006_3323 326 3e-88 > Ahg889845 jgi|Araly1|889845|Al_scaffold_0007_1831 Length=1983 Score = 1363 bits (738), Expect = 0.0 Identities = 961/1066 (90%), Gaps = 25/1066 (2%) Strand=Plus/Plus Query 11 CTGCAGATGATATTACAACTTCAGGTTCACTTCAATTCGATTTTAAAGCAATTGAAGCTG 70 |||||||||||| | |||| |||||||||||||||||||| |||||||| ||| |||||| Sbjct 926 CTGCAGATGATACTGCAACATCAGGTTCACTTCAATTCGAATTTAAAGCTATTCAAGCTG 985 Query 71 CAACAAATAATTTTCAGAAGAGTAACAAGCTTGGTCATGGTGGATTTGGT---G-----A 122 ||||||||||||||||||||||||||||||| |||||||||||||||||| | | Sbjct 986 CAACAAATAATTTTCAGAAGAGTAACAAGCTAGGTCATGGTGGATTTGGTGAAGTTTACA 1045 Query 123 A-GGAACTTTTCCGAATGGAACAGAAGTTGCTGTGAAGAGGCTGTCTAAAATTTCAGGTC 181 | ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1046 AGGGAACGTTTCCGAATGGAACAGAAGTTGCTGTGAAGAGGCTGTCTAAAACTTCAGGTC 1105 Query 182 AAGGTGAAGAAGAGTTTAAGAACGAGGTGCTTCTTGTAGCAAAGCTCCAACATAGAAATC 241 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1106 AAGGTGAACAAGAGTTTAAGAACGAGGTGCTTCTTGTAGCAAAGCTCCAACATAGAAATC 1165 Query 242 TCGTTAGACTTCTGGGGTTCTCTGTTGAAGGAGAAGAAAAGATACTTGTCTACGAGTATA 301 ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 1166 TCGTTAGACTTCTCGGGTTCTCTGTCGAAGGAGAAGAAAAGATACTTGTCTACGAGTTTG 1225 Query 302 TGC-CAAATAAAAGTCTTGACTATTTTCTCTTTGACCATAG-AAGGAGGGGTCAGCTGGA 359 ||| ||| ||||||||||||||| || |||||||||| | | || ||||||||| || || Sbjct 1226 TGCACAA-TAAAAGTCTTGACTACTTCCTCTTTGACCCT-GTAAAGAGGGGTCAACTTGA 1283 Query 360 TTGGAGAACACGATACAACATAATC-AGGGGAGTGACTCGAGGGATTTTATATCTCCATC 418 |||||||| ||| || ||||| ||| |||| | | |||||||||||||||||||| |||| Sbjct 1284 TTGGAGAAAACGCTATAACATTATCGAGGGAATT-ACTCGAGGGATTTTATATCTTCATC 1342 Query 419 AAGATTCACGGCTTACAATCATACACCGTGACCTCAAAGCGGGTAACATTCTCTTAGATG 478 ||||||||||||| ||||||||||| ||||||||||||||| |||||||||| || |||| Sbjct 1343 AAGATTCACGGCTCACAATCATACATCGTGACCTCAAAGCGAGTAACATTCTATTGGATG 1402 Query 479 TC-GATATGAACCCGAAAATCGCGGATTTTGGTGTGGCTAGGAATTTTAGAGTGGACCAA 537 | |||||||||||||||||||| |||||||| |||| |||||||| ||||||||||| Sbjct 1403 -CAGATATGAACCCGAAAATCGCAGATTTTGGAATGGCAAGGAATTTCAGAGTGGACCAG 1461 Query 538 ACTGAAG-CTACCACAGGAAGAGTAGTTGGAACATTCGGTTACATGCCTCCCGAATATGT 596 ||||||| | | ||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 1462 ACTGAAGACAAT-ACAGGAAGAGTAGTTGGAACATTTGGTTACATGCCTCCCGAGTATGT 1520 Query 597 GGCGAACGGGCAGTTCTCGATGAAATCTGATGTTTATAGTTTTGGAGTATTGATTCTGGA 656 |||||| ||||||||||||||||||||||||||||||||||| |||||| ||| |||||| Sbjct 1521 GGCGAATGGGCAGTTCTCGATGAAATCTGATGTTTATAGTTTCGGAGTAATGACTCTGGA 1580 Query 657 GATTATTGTTGGCAAAAAGAGTAGTAGCTTCCATGAGATTGATGGTTCAGTAGGAAACTT 716 ||||||||||||||||||||||||||||||||| |||| ||| |||||||||| ||| | Sbjct 1581 GATTATTGTTGGCAAAAAGAGTAGTAGCTTCCACCAGATAGATAGTTCAGTAGGCAACCT 1640 Query 717 GGTCACATATGTTTGGAGGCTTTGGAACAACGAATCATT-CTTGGAACTTGTAGACCCGG 775 |||||||||||||||||||||||||||||||| ||||| || |||||| ||||||||| Sbjct 1641 GGTCACATATGTTTGGAGGCTTTGGAACAACGGATCATCGCT-GGAACTCATAGACCCGG 1699 Query 776 CCATGGGGGAGAGTTATGATAAAGATGAAGTCATCAGATGCATCCATATAAGCTTATTGT 835 |||||||||||| ||| ||||||||||||||||| ||||||||||| || | ||||||| Sbjct 1700 CCATGGGGGAGAATTACGATAAAGATGAAGTCATTAGATGCATCCACATCGGGTTATTGT 1759 Query 836 GCGTTCAAGAAAATCCTGCAGATCGTCCAACAATGTCCACA-GTGTTTCAGATGCTCACT 894 ||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||||| Sbjct 1760 GCGTTCAAGAAAATCCTGCAGATCGTCCAACCATGTCCA-ATGTTTTTCAGATGCTCACT 1818 Query 895 AATACTTTTCTTACTCTGCCCGTGCCTCAATTACCTGGATTTGTTTTCAGGGTCAGATCC 954 |||| || | ||||||||||| |||||| |||||||||||| ||||||||||||||| Sbjct 1819 AATAATTCAATCACTCTGCCCGTCCCTCAAACACCTGGATTTGTCTTCAGGGTCAGATCC 1878 Query 955 GAGCCAAACCCATTAGCCGAGAGACT-TGAGCCTGGTCCGTCTACTACCATGTCGTTTGC 1013 ||||||||||||||||| |||||| | | ||||||||||||||||| ||||||||||||| Sbjct 1879 GAGCCAAACCCATTAGCTGAGAGA-TATCAGCCTGGTCCGTCTACTGCCATGTCGTTTGC 1937 Query 1014 TTGTTCCATTGATGATGCATCGATCACGAGTGTTGATCTTCGTTGA 1059 |||||| ||||||||||||||||||||||||||| ||| ||||||| Sbjct 1938 TTGTTCTATTGATGATGCATCGATCACGAGTGTTAATCCTCGTTGA 1983 > Ahg889841 jgi|Araly1|889841|Al_scaffold_0007_1827 Length=591 Score = 564 bits (305), Expect = 5e-160 Identities = 355/379 (94%), Gaps = 4/379 (1%) Strand=Plus/Plus Query 683 GCTTCCATGAGATTGATGGTTCAGTAGGAAACTTGGTCACATATGTTTGGAGGCTTTGGA 742 ||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 215 GCTTCCACCAGATAGATGGTTCAGTAGGCAACTTGGTCACATATGTTTGGAGGCTTTGGA 274 Query 743 ACAACGAATCATTCTTGGAACTTGTAGACCCGGCCATGGGGGAGAGTTATGATAAAGATG 802 ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 275 ACAACAAATCTTTCTTGGAACTCGTAGACCCGGCCATGGGGGAGAGTTATGATAAAGATG 334 Query 803 AAGTCATCAGATGCATCCATATAAGCTTATTGTGCGTTCAAGAAAATCCTGCAGATCGTC 862 |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 335 AAGTGATCAGATGCATCCATATAAGCTTATTGTGCGTTCAAGAAAATCCTGTAGATCGTC 394 Query 863 CAACAATGTCCACAGTGTTTCAGATGCTCACTAATACTTTTCTTACTCTGCCCGTGCCTC 922 |||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 395 CAACCATGTCCACATTATTTCAGATGCTCACTAATACTTTTCTTACTCTGCCCGTGCCTC 454 Query 923 AATTACCTGGATTTGTT-TTCAGGGTCAGATCCGAGCCAAACCCATTAGCCGAGAGACTT 981 ||| ||||||| || || |||||||||||||||||||||||| |||||||||||||| || Sbjct 455 AATCACCTGGAGTT-TTCTTCAGGGTCAGATCCGAGCCAAACTCATTAGCCGAGAGA-TT 512 Query 982 G-AGCCTGGTCCGTCTACTACCATGTCGTTTGCTTGTTCCATTGATGATGCATCGATCAC 1040 | | ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| Sbjct 513 GGACCCTGGTCCGTCTAATACCATGTCGTTTGCTTATTCCATTGATGATGCGTCGATCAC 572 Query 1041 GAGTGTTGATCTTCGTTGA 1059 ||||||| ||||||||||| Sbjct 573 GAGTGTTAATCTTCGTTGA 591 > Ahg492542 jgi|Araly1|492542|fgenesh2_kg.7__1975__AT4G23260.1 Length=1990 Score = 538 bits (291), Expect = 3e-152 Identities = 607/756 (80%), Gaps = 36/756 (5%) Strand=Plus/Plus Query 135 GAATGGAACAGAAGTTGCTGTGAAGAGGCTGTCTAAAATTTCAGGTCAAGGTGAAGAAGA 194 |||||| || ||| |||| || ||||| |||| |||| ||||| |||||||||| ||| Sbjct 1066 GAATGGCACTGAAATTGCGGTAAAGAGATTGTCGAAAACATCAGGACAAGGTGAAGTAGA 1125 Query 195 GTTTAAGAACGAGG-TGCTTCTTGTAGCAAAGCTCCAACATAGAAATCTCGTTAGACTTC 253 ||| |||||||||| || || |||| |||||||| ||||| | ||||||||||||||||| Sbjct 1126 GTTCAAGAACGAGGTTG-TTGTTGTTGCAAAGCTTCAACACATAAATCTCGTTAGACTTC 1184 Query 254 TGGGGTTCTCTG-TTGAAGGAGAAGAAAAGATACTTGTCTACGAGTATATGCCAAATAAA 312 | || || || | | |||||||||| ||| |||| || || |||| | | |||| ||| Sbjct 1185 TCGGTTTTTC-GCTACAAGGAGAAGAGAAGTTACTCGTATATGAGTTTGTTTCAAACAAA 1243 Query 313 AGTCTTGACTATTTTCTCTTTGA-CCATA-GAAGGAGGGGTCAGCTGGATTGGAGAACAC 370 || || || ||||| |||||||| || || ||| ||| |||| |||| |||| || | Sbjct 1244 AGCCTCGATTATTTCCTCTTTGATCC-TACGAA-GAGAAATCAGTTGGACTGGACAATGC 1301 Query 371 GATACAACATAATCAG-GGGAGTGACTCGAGGGATTTTATATCTCCATCAAGATTCACGG 429 || ||| || ||| | |||| | |||||||||||||||||||| ||||||||||||||| Sbjct 1302 GACGCAATATCATCGGTGGGA-TTACTCGAGGGATTTTATATCTTCATCAAGATTCACGG 1360 Query 430 CTTACA-ATCATACACCGTGACCTCAAAGCGGGTAACATTCTCTTAGATGTC-GATATGA 487 || | | |||||||| ||||||||||||||| |||||||||||||||||| | ||||||| Sbjct 1361 CTGA-AGATCATACATCGTGACCTCAAAGCGAGTAACATTCTCTTAGATG-CTGATATGA 1418 Query 488 ACCCGAAAATCGCGGATTTTGGTGTGGCTAGGAAT-TTTAGAGTGGACCAAACTGAAGCT 546 | |||||||| || |||||||| |||| ||| || ||| ||||||||||||||| ||| Sbjct 1419 ATCCGAAAATTGCTGATTTTGGAATGGCAAGG-ATCTTTGGAGTGGACCAAACTGTAGCC 1477 Query 547 ACCACAGGAAGAGTAGTTGGAACATTCGGTTACATGCCTCCCGAATATGTGGCGA-ACGG 605 | |||| ||||||||||||||| |||||||||||| ||||||| |||||| | | | || Sbjct 1478 AATACAGCAAGAGTAGTTGGAACCTTCGGTTACATGTCTCCCGAGTATGTGAC-ACATGG 1536 Query 606 GCAGTTCTCGATGAAATCTGATGTTTATAGTTTTGGAGTATTGATTCTGGAGATTATT-G 664 || |||||||||||||| ||||| ||||| ||||||||||||||||| ||||| ||| | Sbjct 1537 CCAATTCTCGATGAAATCAGATGTGTATAGCTTTGGAGTATTGATTCTTGAGATCATTAG 1596 Query 665 TTGGCAAAAAGAGTAGTAGCTTCCATGAGATTGATGGTTCAG-TAGGA-AACTTGGTCAC 722 ||||||||||| ||| |||||| | |||| ||||||| || || | || || ||||| Sbjct 1597 -TGGCAAAAAGAATAGCAGCTTCTACCAGATGGATGGTTTAGTTA--ACAATTTAGTCAC 1653 Query 723 ATATGTTTGGAGGCTTTGGAACAACGAATCATT-CTTGGAACTTGTAGA-CCCGGCCAT- 779 |||||| |||| |||||| | ||| ||||||| | | || || |||| ||| | || Sbjct 1654 ATATGTCTGGAAACTTTGGGAGAACAAATCATTGCAT-GAGCTCATAGATCCC-GTTATC 1711 Query 780 GGGGGAGAGTTATGATAAA--GATGAAGTCATCAGATGCATCCATA-TAAGCTTATTGTG 836 | ||| || | | ||| ||||||||||| |||| ||| |||| | || | || || Sbjct 1712 AAAGAAGA-TTGT-A-AAAGCGATGAAGTCATTAGATACATTCATATTGGGC-TGTTATG 1767 Query 837 CGTTCAAGAAAATCCTGCAGATCGTCCAACAATGTC 872 ||||||||||||||||||||||||||||||||||| Sbjct 1768 TGTTCAAGAAAATCCTGCAGATCGTCCAACAATGTC 1803 > Ahg895327 jgi|Araly1|895327|Al_scaffold_0006_3323 Length=1965 Score = 326 bits (176), Expect = 3e-88 Identities = 578/765 (76%), Gaps = 55/765 (7%) Strand=Plus/Plus Query 21 TATTACAACTTCAGGTTCACTTCAATTCGATTTTAAAG-CAATTGAAGCTGCAACAAATA 79 |||| ||||| || |||||| |||| ||| | | ||| ||||| | ||||||||| || Sbjct 954 TATTCCAACTACATATTCACTGCAATACGA-TCTGAAGACAATTCAGGCTGCAACATGTA 1012 Query 80 -ATTTTCAGAAGAGTAACAAGCTTGGTCATGGTGGATTTGGTGAAG----GAA--CTTT- 131 ||||||| ||||| || | ||| ||||| ||||||||||| |||| || ||| Sbjct 1013 CATTTTCA-AAGAGCAATATGCTCGGTCAAGGTGGATTTGGAGAAGTTTTCAAGGGTTTA 1071 Query 132 -TCCGA-ATGGAACAGAAGTTGCTGTGAAGAGGCTGTCTAAAA-TTTCAGGTCAAGGTGA 188 | | | | || ||||| |||| ||||||||||| || |||| |||| ||||| | Sbjct 1072 CTTCAAGACGGGTCAGAAATTGCGGTGAAGAGGCTATC-AAAAGAATCAGCACAAGGAGT 1130 Query 189 AGAAGAGTTTAAGAACGAG-GTGCTTCTTGTAGCAAAGCTCCAACATAGAAATCTCGTTA 247 | ||||||| ||||| ||| || ||| || |||||||| || || |||||| | ||| Sbjct 1131 ACAAGAGTTCAAGAATGAGAGT-AGTCTCGTGGCAAAGCTTCAGCACAGAAATTTGGTTG 1189 Query 248 GACTTCTGGGGTTCTCTGT-T-GAAGGAGAAGAAAAGATACTTGTCTACGAGTATATGCC 305 || |||| ||||| | ||| | |||||||||||||||||||| || ||||||| | | || Sbjct 1190 GAGTTCTCGGGTT-T-TGTATGGAAGGAGAAGAAAAGATACTCGTTTACGAGTTTGTTCC 1247 Query 306 AAATAAAAGTCTTGACTATTTTC-TCTTTG-ACCATA-GAAGGAGGGGTCAGCTGGATT- 361 || ||||| || ||| | ||| | |||| ||| || ||| | || || ||||||| Sbjct 1248 TAACAAAAGCCTCGACCA-GTTCTTGTTTGAACC-TACAAAGCA-AGGCCAACTGGATTG 1304 Query 362 GGAGAACACGATACAACATAATCAG-GGGAGTGACTCGAGGGATTTTATATCTCCATCAA 420 || ||| ||| ||||| || || | |||| || || |||| ||| ||||||| ||||| Sbjct 1305 GGCGAA-ACGGTACAAGATTATTGGTGGGACTG-CTAGAGGAATTCTATATCTTCATCAT 1362 Query 421 GATTCACGGCTTACAATCATACACCGTGACCTCAAAGCGGGTAACATTCTCTTAGATGTC 480 || |||| || | |||||||||||||||||||||||| ||||||| |||||||||| | Sbjct 1363 GACTCACCTCTCAAAATCATACACCGTGACCTCAAAGCTAGTAACATCCTCTTAGATG-C 1421 Query 481 -GATAT-GAACCCGAAAATCGCGGATTTTGGTGTGGCTAGGAATTTT-AGAGTGGACCAA 537 || || |||||| ||| | || |||||||| |||| ||| ||||| || || || ||| Sbjct 1422 TGAAATGGAACCC-AAAGTTGCAGATTTTGGAATGGCAAGG-ATTTTGAGGGTAGATCAA 1479 Query 538 --ACTGAAGCT-ACCAC-AGGAAGAGTAGTTGGAACAT-TCGGTTACATGCCTCCCGAAT 592 || | |||| | || | | |||||||||||||| | | || |||||| |||| || | Sbjct 1480 TCAC-G-AGCTGA-TACAAAG-AGAGTAGTTGGAACCTAT-GGCTACATGTCTCCAGAGT 1534 Query 593 ATGTGGCGAACGGGCAGTTCTCGATGAAATCTGATGTTTATAGTTTTGGAGTATTGATTC 652 || || | | ||||| |||||||||||||||||||||||||||||||| || ||| ||| Sbjct 1535 ATTTGATGCATGGGCAATTCTCGATGAAATCTGATGTTTATAGTTTTGGGGTCTTGGTTC 1594 Query 653 TGGAGATTATT-GTTGGCAAAAAGAGT-AGTAGCTTCCATGAGATTGATGGTTCAGT-AG 709 | ||||| || | || ||||||| || | |||||| || | ||||| ||| | | Sbjct 1595 TTGAGATAATAAGC-GG-AAAAAGAAACAGCAACTTCCACGAAACTGATGATTCCGGCAA 1652 Query 710 GAAACTTGGTCACATATGTTTGGAGGCTTTGGA-ACAACGAATCA 753 ||| |||||||||| ||| ||||| || ||||| | |||| |||| Sbjct 1653 GAA-CTTGGTCACACATGCTTGGAAGCATTGGAGA-AACGGATCA 1695 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39419096178 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5