BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23260.1
Length=2185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492542 jgi|Araly1|492542|fgenesh2_kg.7__1975__AT4G23260.1 2880 0.0
Ahg889845 jgi|Araly1|889845|Al_scaffold_0007_1831 592 5e-168
Ahg492547 jgi|Araly1|492547|fgenesh2_kg.7__1980__AT4G23150.1 497 1e-139
Ahg889847 jgi|Araly1|889847|Al_scaffold_0007_1833 433 3e-120
Ahg914949 jgi|Araly1|914949|Al_scaffold_0001_5203 307 2e-82
Ahg889852 jgi|Araly1|889852|Al_scaffold_0007_1838 228 2e-58
> Ahg492542 jgi|Araly1|492542|fgenesh2_kg.7__1975__AT4G23260.1
Length=1990
Score = 2880 bits (1559), Expect = 0.0
Identities = 1803/1919 (94%), Gaps = 23/1919 (1%)
Strand=Plus/Plus
Query 22 aaaaagaaaaaTGGCAACGAAGAGTTGTGAATTAGTCCTCTGTTTCTTCGTCTTTTTCGT 81
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 AAAAAGAAAAATGGCAACGAAGAGTTGTGAATTAGTCCTCTGTTTCTTCTTCTTTTTCGT 60
Query 82 CATAAGCTTCAGTGCAATTTCTGTTTCTGCACAAACTTGTGACAATACTACTGGGACTTT 141
|||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 CATATGCTTCAGTGCCATTTCTGTTTCTGCACAAACTTGTGAAAATACTACTGGGACTTT 120
Query 142 CATACCCAATAGTCCTTATGATAAGAACCGCCGACTCATCCTCTCTACTCTAGCTTCTAA 201
||||||||||||||||||||| ||||||||| ||||||| |||||| |||||||||||||
Sbjct 121 CATACCCAATAGTCCTTATGACAAGAACCGCGGACTCATTCTCTCTCCTCTAGCTTCTAA 180
Query 202 CGTCACGGCTCAGGAGGGCTACTTCATCGGTTCGATTGGGATTGCTCCTGACCAAGTCTT 261
|||||||||||| || ||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 181 CGTCACGGCTCATGACGGCTACTTCATCGGTTCGACTGGGATTTCTCCTGACCAAGTCTT 240
Query 262 TGCCACCGGGATGTGCGCTCCAGGTTCTGAGCGTGATGTTTGCTCTCTCTGTATCAGGTC 321
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 241 TGCCATGGGGATGTGCGCTCCAGGCTCTGAGCGTGACGTTTGCTCTCTCTGTATCAGGAC 300
Query 322 CACATCAGAGAGTTTACTACAAAGCTGTCTGGACCAGGCAGATGCTTTCTTCTGGTCAGG 381
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 301 CACATCAGAGAGTTTACTTCAAAGCTGTCCAAACCAGGCAGATGCTTTCTTCTGGTCAGG 360
Query 382 TGAAGAAACCCTTTGCCTTGTTCGCTACGCTAACCGCCCCTTCTCTGGATTGCTCGTCAT 441
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 TGAAGAAACCCTTTGCCTTGTTCGCTACTCTAACCGCCCCTTCTCTGGATTGCTCGTCAT 420
Query 442 GGATCCACTAGGAGCGATATTCAACACAGGAGAACTCAATACGAATCAGACTGTGTTTGA 501
|||||||||||||||||| ||||| || ||||||||||||||||||||||||| ||||||
Sbjct 421 GGATCCACTAGGAGCGATTTTCAATACGGGAGAACTCAATACGAATCAGACTGAGTTTGA 480
Query 502 TATCGAGTGGAATAATTTAACTTCTAGTATGATCGCCGGAATAACTTCTTCTTCATCAGG 561
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 TATCGTGTGGAATAATTTAACTTCTAGTATGATCGCCGGAATAACTTCTTTTTCATCAGG 540
Query 562 GGGGAACAATTCGTCTAAGTACTACTCAGACGATATAGCTCTTGTGCCGGATTTTAAGAA 621
| |||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 541 CGCAAACAATTCGTCTAAATACTATTCAGACGATATAGCTCTAGTGCCGGATTTCAAGAA 600
Query 622 CATATCAGCGTTGATGCAATGCACACCAGACGTTTCGTCAGAGGATTGTAACACTTGCTT 681
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 CATATCAGCGTTGATGCAATGCACACCAGACGTTTCTTCAGAGGATTGTAACACTTGCTT 660
Query 682 ACGGCAAAACGTTGTCGACTATGATAATTGTTGCCGTGGGCACCAAGGCGGCGTTATGTC 741
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 661 ACGGAAAAACGTTGTCGACTATGATAATTGTTGCCGTGGGCACCAAGGCGGCGTTTTATC 720
Query 742 AAGGCCAAACTGCTTTTTCCGATGGGAAGTGTATCCCTTCTCTGGTGCTATTGATCAGAT 801
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACGGCCAAACTGCTTTTTCCGATGGGAAGTGTATCCCTTCTCTGGTGCTATTGATCAGAT 780
Query 802 TAATTTACCAAAGTCACCGCCGCCTTCAGTTACATCCCCGTCTCCTATAGCCAACATAAC 861
||||||||| |||||||||||||||||| | ||| |||| ||||||||||||||||||||
Sbjct 781 TAATTTACCGAAGTCACCGCCGCCTTCAATCACACCCCCATCTCCTATAGCCAACATAAC 840
Query 862 CAAGAATGGAAATAGAATATCAGGAGGAAAAATCGCAGCAATAGTTGTTGTTACTGTTGT 921
|||||| ||||| | | |||||||||| | |||||| |||||||||||||||| ||||||
Sbjct 841 CAAGAAAGGAAA-A-A-TATCAGGAGGGACAATCGCGGCAATAGTTGTTGTTATTGTTGT 897
Query 922 TACAATAATATTGGTTGTTTTAGGCTTTGTTATTTCCAATAGAAGAAAGCAAAAGCAAGA 981
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 898 TACAATAATATTGGTTGTTTTAGGCTTGGTTATTTCCAATAGAAGAAAGCAAAAGCAAGA 957
Query 982 AATGGATCTTCCAACGGAATCTGTTCAATTTGATTTAAAGACAATTGAATCGGCGACAAG 1041
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 958 CATGGACCTTCCAACGGAATCTGTTCAATTTGATTTAAAGACAATTGAATCGGCGACGAG 1017
Query 1042 CAACTTTTCCGAACGTAACAAGCTTGGTAAAGGTGGATTCGGTGAAGTTTACAAGGGTAT 1101
||||||||||||||||||||| | | | || | | ||| |||||| ||
Sbjct 1018 TAACTTTTCCGAACGTAACAAG------A----T---T-CG-T-AT-TTT-CAAGGGCAT 1059
Query 1102 GCTCATGAATGGCACTGAAATTGCGGTGAAGAGATTGTCGAAAACATCAGGACAAGGTGA 1161
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1060 GCTCATGAATGGCACTGAAATTGCGGTAAAGAGATTGTCGAAAACATCAGGACAAGGTGA 1119
Query 1162 AGTAGAGTTCAAGAACGAGGTTGTTGTTGTTGCAAAGCTTCAACACATAAATCTTGTTAG 1221
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1120 AGTAGAGTTCAAGAACGAGGTTGTTGTTGTTGCAAAGCTTCAACACATAAATCTCGTTAG 1179
Query 1222 ACTTCTCGGGTTTTCGCTACAAGGAGAAGAGAAGTTACTCGTCTATGAGTTTGTTTCAAA 1281
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1180 ACTTCTCGGTTTTTCGCTACAAGGAGAAGAGAAGTTACTCGTATATGAGTTTGTTTCAAA 1239
Query 1282 CAAAAGCCTCGATTATTTCCTCTTTGATCCTACGAAGAGAAATCAGTTGGACTGGACAAT 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 CAAAAGCCTCGATTATTTCCTCTTTGATCCTACGAAGAGAAATCAGTTGGACTGGACAAT 1299
Query 1342 GCGACGCAATATCATCGGTGGCATTACTCGAGGGATTTTATATCTTCATCAAGATTCGCG 1401
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1300 GCGACGCAATATCATCGGTGGGATTACTCGAGGGATTTTATATCTTCATCAAGATTCACG 1359
Query 1402 GCTGAAGATCATACATCGTGACCTCAAAGCGAGTAACATTCTCTTAGATGCGGATATGAA 1461
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1360 GCTGAAGATCATACATCGTGACCTCAAAGCGAGTAACATTCTCTTAGATGCTGATATGAA 1419
Query 1462 TCCAAAAATCGCTGATTTCGGAATGGCAAGGATCTTTGGAGTGGACCAAACTGTTGCCAA 1521
||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1420 TCCGAAAATTGCTGATTTTGGAATGGCAAGGATCTTTGGAGTGGACCAAACTGTAGCCAA 1479
Query 1522 TACAGGAAGAGTGGTTGGAACCTTTGGTTACATGTCTCCTGAGTATGTGACACATGGCCA 1581
||||| |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1480 TACAGCAAGAGTAGTTGGAACCTTCGGTTACATGTCTCCCGAGTATGTGACACATGGCCA 1539
Query 1582 ATTCTCAATGAAATCAGACGTCTATAGTTTTGGAGTATTGATTCTTGAGATCATTAGTGG 1641
|||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1540 ATTCTCGATGAAATCAGATGTGTATAGCTTTGGAGTATTGATTCTTGAGATCATTAGTGG 1599
Query 1642 CAAAAAGAATAGCAGCTTCTACCAAATGGATGGCTTAGTTAACAATTTAGTCACATATGT 1701
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1600 CAAAAAGAATAGCAGCTTCTACCAGATGGATGGTTTAGTTAACAATTTAGTCACATATGT 1659
Query 1702 CTGGAAACTTTGGGAGAACAAATCATTGCATGAGCTCTTAGATCCCTTTATCAACCAAGA 1761
||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 1660 CTGGAAACTTTGGGAGAACAAATCATTGCATGAGCTCATAGATCCCGTTATCAAAGAAGA 1719
Query 1762 TT-TCACAAGCGAGGAAGTCATTAGATACATTCATATTGGACTGTTATGTGTTCAAGAAA 1820
|| | | |||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1720 TTGTAA-AAGCGATGAAGTCATTAGATACATTCATATTGGGCTGTTATGTGTTCAAGAAA 1778
Query 1821 ATCCTGCAGATCGACCAACAATGTCTACGATTCACCAAATGCTCACAAACAGCTCAATCA 1880
||||||||||||| |||||||||||||| ||||||||| ||||||||| ||||||||| |
Sbjct 1779 ATCCTGCAGATCGTCCAACAATGTCTACTATTCACCAAGTGCTCACAACCAGCTCAATTA 1838
Query 1881 CTCTGCCTGTGCCTCTGCCTCCTGGATTTTTCTTTAGGAACGGACCAGGATCGAACCCG 1939
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1839 CTCTGCCTGTGCCTAAGCCACCTGGATTTTTCTTTAGGAACGGACCAGGATCGAACCCG 1897
> Ahg889845 jgi|Araly1|889845|Al_scaffold_0007_1831
Length=1983
Score = 592 bits (320), Expect = 5e-168
Identities = 737/935 (79%), Gaps = 42/935 (4%)
Strand=Plus/Plus
Query 1005 TTCAATTTG-ATTTAAAGACAATTGAATCGGCGACAAGCAACTTTTCCGAA-CGTAACAA 1062
||||||| | |||||||| | ||| || | || |||| || ||||| ||| |||||||
Sbjct 956 TTCAATTCGAATTTAAAG-CTATTCAAGCTGCAACAAATAA-TTTTCAGAAGAGTAACAA 1013
Query 1063 GCTTGGTAAAGGTGGATTCGGTGAAGTTTACAAGGGTATG-CTCATGAATGGCACTGAAA 1121
||| ||| | |||||||| ||||||||||||||||| | | || |||||| || |||
Sbjct 1014 GCTAGGTCATGGTGGATTTGGTGAAGTTTACAAGGGAACGTTTC-CGAATGGAACAGAAG 1072
Query 1122 TTGCGGTGAAGAGATTGTCGAAAACATCAGGACAAGGTGAAGTAGAGTTCAAGAACGAGG 1181
|||| |||||||| |||| ||||| ||||| ||||||||| |||||| ||||||||||
Sbjct 1073 TTGCTGTGAAGAGGCTGTCTAAAACTTCAGGTCAAGGTGAACAAGAGTTTAAGAACGAGG 1132
Query 1182 TTG-TTGTTGTTGCAAAGCTTCAACACATAAATCTTGTTAGACTTCTCGGGTTTTC-GCT 1239
|| || |||| |||||||| ||||| | |||||| ||||||||||||||||| || | |
Sbjct 1133 -TGCTTCTTGTAGCAAAGCTCCAACATAGAAATCTCGTTAGACTTCTCGGGTTCTCTG-T 1190
Query 1240 AC-AAGGAGAAGAGAAGTTACTCGTCTATGAGTTTGTTTCA-AACAAAAGCCTCGATTAT 1297
| |||||||||| ||| |||| ||||| ||||||| | || || ||||| || || ||
Sbjct 1191 -CGAAGGAGAAGAAAAGATACTTGTCTACGAGTTTG-TGCACAATAAAAGTCTTGACTAC 1248
Query 1298 TTCCTCTTTGATCCTACGAAGAGAAATC-AGTTGGACTGGACAATGCGAC-GCAATATCA 1355
||||||||||| ||| ||||| || | || || |||| || || | || || |
Sbjct 1249 TTCCTCTTTGACCCTGTAAAGAGGGGTCAACTT-GATTGGAGAAAACG-CTATAACATTA 1306
Query 1356 TCG-GTGGCATTACTCGAGGGATTTTATATCTTCATCAAGATTCGCGGCTGA-AGATCAT 1413
||| | || ||||||||||||||||||||||||||||||||||| ||||| | | |||||
Sbjct 1307 TCGAG-GGAATTACTCGAGGGATTTTATATCTTCATCAAGATTCACGGCTCACA-ATCAT 1364
Query 1414 ACATCGTGACCTCAAAGCGAGTAACATTCTCTTAGATGCGGATATGAATCCAAAAATCGC 1473
|||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||
Sbjct 1365 ACATCGTGACCTCAAAGCGAGTAACATTCTATTGGATGCAGATATGAACCCGAAAATCGC 1424
Query 1474 TGATTTCGGAATGGCAAGGATCTTTG-GAGTGGACCAAACTGTTGCCAATACAGGAAGAG 1532
||||| ||||||||||||| ||| |||||||||| |||| | ||||||||||||||
Sbjct 1425 AGATTTTGGAATGGCAAGGAA-TTTCAGAGTGGACCAGACTGAAGACAATACAGGAAGAG 1483
Query 1533 TGGTTGGAACCTTTGGTTACATGTCTCCTGAGTATGTGAC-ACATGGCCAATTCTCAATG 1591
| |||||||| |||||||||||| |||| ||||||||| | | |||| || ||||| |||
Sbjct 1484 TAGTTGGAACATTTGGTTACATGCCTCCCGAGTATGTGGCGA-ATGGGCAGTTCTCGATG 1542
Query 1592 AAATCAGACGTCTATAGTTTTGGAGTATTGATTCTTGAGATCATTAGT-GGCAAAAAGAA 1650
||||| || || |||||||| |||||| ||| ||| ||||| ||| || ||||||||||
Sbjct 1543 AAATCTGATGTTTATAGTTTCGGAGTAATGACTCTGGAGATTATT-GTTGGCAAAAAGAG 1601
Query 1651 TAGCAGCTTCTACCAAATGGATGGCTT-AGTTAA-CAATTTAGTCACATATGTCTGGAAA 1708
||| |||||| |||| || ||| | || ||| | ||| | ||||||||||| ||||
Sbjct 1602 TAGTAGCTTCCACCAGATAGATAG-TTCAGT-AGGCAACCTGGTCACATATGTTTGGAGG 1659
Query 1709 CTTTGGGAGAACAAATCATTGCATG-AGCTCTTAGATCCCTTT-ATCAACCAAGATTT-C 1765
|||||| | ||| ||||| || || | ||| |||| ||| || | || || |
Sbjct 1660 CTTTGGAACAACGGATCATCGC-TGGAACTCATAGA-CCCGGCCATGGGGGA-GAATTAC 1716
Query 1766 -ACAAGCGAGGAAGTCATTAGATACATTCATATTGGACTGTTATGTGTTCAAGAAAATCC 1824
| || || ||||||||||||| ||| || || || | || || ||||||||||||||
Sbjct 1717 GATAAA-GATGAAGTCATTAGATGCATCCACATCGGGTTATTGTGCGTTCAAGAAAATCC 1775
Query 1825 TGCAGATCGACCAACAATGTCTAC-GATTCACCAAATGCTCACAAACAGCTCAATCACTC 1883
||||||||| ||||| ||||| | | || | | |||||||| || | ||||||||||
Sbjct 1776 TGCAGATCGTCCAACCATGTCCAATGTTTTTC-AGATGCTCACTAATAATTCAATCACTC 1834
Query 1884 TGCCTGTGCCTCTGCCTCCTGGATTTTTCTTTAGG 1918
|||| || |||| | ||||||||| |||| |||
Sbjct 1835 TGCCCGTCCCTCAAACACCTGGATTTGTCTTCAGG 1869
> Ahg492547 jgi|Araly1|492547|fgenesh2_kg.7__1980__AT4G23150.1
Length=1656
Score = 497 bits (269), Expect = 1e-139
Identities = 498/607 (82%), Gaps = 22/607 (4%)
Strand=Plus/Plus
Query 1065 TTGGTAAAGGTGGATTCGGTGAAGTTTACAAGGGT--ATGCTCATGAATGGCACTGAAAT 1122
||||| ||||||||| ||||| |||||||||||| || ||| ||||| || ||| |
Sbjct 1025 TTGGTCGAGGTGGATTTGGTGACGTTTACAAGGGTACATTTTCA--AATGGAACCGAAGT 1082
Query 1123 TGCGGTGAAGAGATTGTCGAAAACATCAGGACAAGGTGA-AGTAGAGTTCAAGAACGAGG 1181
||| ||||||||| ||||||||||||||| ||||||||| | ||| |||||||||||||
Sbjct 1083 TGCAGTGAAGAGACTGTCGAAAACATCAGAACAAGGTGACA-CAGAATTCAAGAACGAGG 1141
Query 1182 TTGTTGTTGTTGCAAAGCTTCAACACATAAATCTTGTTAG-ACTTCTCGGGTTTTCGCTA 1240
|||||||||||||||| |||| |||| |||||| ||||| | ||||||| ||||| ||
Sbjct 1142 TTGTTGTTGTTGCAAATCTTCGGCACAAAAATCTGGTTAGGA-TTCTCGGATTTTCTATA 1200
Query 1241 CAAGGAGAAGAGAAGT-TACTCGTCTATGAGTTTGTTTCAAACAAAAGCCTCGATTATTT 1299
|||||||||| ||| || | |||||||||| ||| ||| |||||||| ||| | ||
Sbjct 1201 GAAGGAGAAGA-AAGGATATTGGTCTATGAGTATGTGGAAAATAAAAGCCTTGATAACTT 1259
Query 1300 CCTCTTTGATCCTACGAAGAGAAA--TCAGTTGGACTGGACA-ATGCGACGCAATATCAT 1356
||| ||||||||| | || ||||| |||| || |||||||| | |||| | |||||||
Sbjct 1260 CCTATTTGATCCTGC-AA-AGAAAGGTCAGCTGTACTGGACACA-GCGATACTATATCAT 1316
Query 1357 CGGTGGCATTACTCGAGGGATTTTATATCTTCATCAAGATTCGCGGCTGA-AGATCATAC 1415
|||| ||| || ||||||| ||||||||||||||||||| || || | | |||||||
Sbjct 1317 TAGTGGGATTGCTAGAGGGATCCTATATCTTCATCAAGATTCACGACTCACA-ATCATAC 1375
Query 1416 ATCGTGACCTCAAAGCGAGTAACATTCTCTTAGATGCGGATATGAATCCAAAAATCGCTG 1475
| ||||||||||||||||||||||||||| | ||||| ||||||||||| ||||| ||||
Sbjct 1376 ACCGTGACCTCAAAGCGAGTAACATTCTCCTGGATGCAGATATGAATCCTAAAATTGCTG 1435
Query 1476 ATTTCGGAATGGCAAGGATCTTTGGAGTGGACCAAACTGTTGCC-AATACAGGAAGAGTG 1534
|||| ||||||||||||||||| ||| |||||||||| || || ||| | ||| |
Sbjct 1436 ATTTTGGAATGGCAAGGATCTTCGGAATGGACCAAACCCA-GCAGAACACAAGCAGAATA 1494
Query 1535 GTTGGAACCTTTGGTTACATGTCTCCTGAGTATGTGACACATGGCCAATTCTCAATGAAA 1594
||||| |||| ||||||||||||||||| |||| || | |||||||||||||||||||
Sbjct 1495 GTTGGTACCTACGGTTACATGTCTCCTGAATATGCGATGCGTGGCCAATTCTCAATGAAA 1554
Query 1595 TCAGACGTCTATAGTTTTGGAGTATT-GATTCTTGAGATCATTAGTGGCAAAAAGAATAG 1653
|| || ||||| |||||||||||||| | |||||||||| || || || | |||||||
Sbjct 1555 TCTGATGTCTACAGTTTTGGAGTATTAG-TTCTTGAGATTATAAGCGGTAGGAAGAATAA 1613
Query 1654 CAGCTTC 1660
|||||||
Sbjct 1614 CAGCTTC 1620
> Ahg889847 jgi|Araly1|889847|Al_scaffold_0007_1833
Length=2025
Score = 433 bits (234), Expect = 3e-120
Identities = 716/939 (76%), Gaps = 72/939 (8%)
Strand=Plus/Plus
Query 1013 GATTTAAAGACAATTGAATCGGCGAC-AAGCAACTTTTCCGAAC--GTAACAAGCTTGGT 1069
||||| |||||||||||| | || || || ||| |||| | ||| |||| |||||||||
Sbjct 1027 GATTTTAAGACAATTGAAGCTGCAACTAA-CAAGTTTT-C-AACAAGTAATAAGCTTGGT 1083
Query 1070 AAAGGTGGATTCGGTGAAGTTTACAAGGGTATGC--TCATGAATGGCACTGAAATTGCGG 1127
||||||||||||||| ||||||| ||||| || || | ||||| |||||| | || |
Sbjct 1084 GAAGGTGGATTCGGTGCGGTTTACATGGGTAAGCTTTC-T-AATGGAACTGAAGTAGCTG 1141
Query 1128 TGAAGAGATTGTCGAAAACA-TCAGGACAAGG-TGAAGTAGAGTTCAAGAACGAGGTTGT 1185
| ||| || ||||||||| | ||||||||||| ||| |||||||| ||| |||| |||
Sbjct 1142 TAAAGCGACTGTCGAAAA-AGTCAGGACAAGGCACAAG-AGAGTTCAGGAATGAGGCTGT 1199
Query 1186 TGTTGTTG-CAAAGCTTCAACACATAAATCTTGTTAGACTTCTCGGGTTTTCG-CTACAA 1243
| ||| || |||| |||||||| | || || || || ||||| || || | | | ||
Sbjct 1200 TCTTG-TGTCAAAACTTCAACATAGGAACCTGGTCAGGCTTCTTGGATTCT-GTTTGGAA 1257
Query 1244 GGAGAAGAGA-AG-TTACTCG-TCTATGAGTTTGTTTCA-AACAAAAGCCTCGATTA-TT 1298
|||| || | || || || | | |||||||||| | || ||||||||||| || || ||
Sbjct 1258 AGAGAGGA-ACAGATT-CT-GATTTATGAGTTTG-TCCACAACAAAAGCCTTGACTACTT 1313
Query 1299 TCCTCTTTGATCCTACGAAG-AG-AAA-TCAGTTGGACTGGACAATGCGACGCAATATCA 1355
| || || || || || || || ||| |||| | |||||||| | || || ||||
Sbjct 1314 T-CTATTCGA-CC--CGGAGAAGCAAAGTCAGCTAGACTGGACCCGGAGATACAGGATCA 1369
Query 1356 TCGGTGGCATTACTCGAGGGATTTTATATCTTCATCAAGATTCGCGGCTGAAGATCATAC 1415
| || || ||| || |||||||| ||||||||||||||||||| ||||| || |||||||
Sbjct 1370 TTGGAGGGATTGCTAGAGGGATTCTATATCTTCATCAAGATTCACGGCTCAAAATCATAC 1429
Query 1416 ATCGTGACCTCAAAGCGAGTAACATTCTCTTAGATGCGGATATGAATCCAAAAATCGCTG 1475
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1430 ATCGTGACCTCAAAGCGAGCAACATTCTCTTAGATGCGGATATGAATCCGAAAATTGCTG 1489
Query 1476 ATTTCGGAATGGCAAGGATCTTTGGAGTGGACCAAACTGTTGCCAATACAGGAAGAG--T 1533
|||| ||| |||||| || |||||| |||| |||||| | || ||| ||| || |
Sbjct 1490 ATTTTGGATTGGCAACTATTTTTGGAATGGAGCAAACTCAAGG-AA-ACACGAACAGAAT 1547
Query 1534 GGTTGGAACCTTTGGTTACATGTCTCCTGAGTATGTGACACATGGCCAATTCTCAATGAA 1593
| |||||||| | |||||||||||| ||||||| || ||||| |||| ||| |||||
Sbjct 1548 TGCTGGAACCTACGCTTACATGTCTCCCGAGTATGCGATGCATGGTCAATACTCCATGAA 1607
Query 1594 ATCAGACGTCTATAGTTTTGGAGTATT-GATTCTTGAGATCATTAGTGGCAA-AAAGAAT 1651
||| ||| | ||||| |||||||| || | |||||||||| || || ||||| ||| ||
Sbjct 1608 ATCTGACATTTATAGCTTTGGAGTCTTAG-TTCTTGAGATTATAAGCGGCAAGAAA-AAC 1665
Query 1652 AGCAGCTTCTACCAAATGGATGG--CTTAGT--TA-AC-AAT-TTAGTCACATATGTCTG 1704
||| || ||||||| ||||||| || ||| | | || |||||||| |||| ||
Sbjct 1666 AGCGGCGTCTACCAGATGGATGAAACT-AGTACTGCAGGAAACTTAGTCACTTATG-CTT 1723
Query 1705 GAAA-CTTTGGGA-GAACAAATCATTGCAT--GAGCTCTTAGATCC--C-TTTATCAACC 1757
|| |||||| | |||||| ||| ||| ||||| | ||||| | ||| ||
Sbjct 1724 CAAGGCTTTGG-ATGAACAAGTCAC--CATTAGAGCTGGTGGATCCAACCTTTGG-AAGG 1779
Query 1758 AAGATT-TCACAAGCGAGGAAGTCATTAGATACATTCATATTG-GACTGTTATGTGTTCA 1815
|| || ||| | | | ||||||| ||||| ||| ||||| | | || |||||||||||
Sbjct 1780 AA--TTATCAGA-GTAATGAAGTCACTAGATGCATCCATATCGCG-CTCTTATGTGTTCA 1835
Query 1816 AGAAAATCCTGCAGATCGACCAACAATGTCTACGATTCACCA-AATGCTCACAAACAGCT 1874
||||||||| | ||| || |||| | || || || || | ||||||||| | || |
Sbjct 1836 AGAAAATCCAGAAGACCGTCCAATGTTATCAACAAT-CATCTTAATGCTCACTAGCAACA 1894
Query 1875 CAATCACTCTGCCTGTGCCTCTGCCT-CCTGGATTTTTC 1912
|||||||||| || ||||||| |||| || |||||||||
Sbjct 1895 CAATCACTCTACCAGTGCCTC-GCCTACCGGGATTTTTC 1932
> Ahg914949 jgi|Araly1|914949|Al_scaffold_0001_5203
Length=1899
Score = 307 bits (166), Expect = 2e-82
Identities = 331/411 (81%), Gaps = 10/411 (2%)
Strand=Plus/Plus
Query 1268 GAGTTTGTTTCAAACAAAAGCCTCGATTATTTCCTCTTTGATCCTACGAAGAGAA-ATCA 1326
|||||||| | |||||||||||||| |||||| | ||||| ||| | || | || | |
Sbjct 1144 GAGTTTGTCCCCAACAAAAGCCTCGACTATTTCTTGTTTGACCCTGC-AAAACAAGGTGA 1202
Query 1327 GTTGGACTGGACAATG-CGACGCAATATCATCGGTGGCATTACTCGAGGGATTTTATATC 1385
| |||||||||| | || ||||||||| || || ||| ||||||| ||| ||||||
Sbjct 1203 ACTAGACTGGACAA-GACGGTACAATATCATTGGGGGGATTGCTCGAGGAATTCTATATC 1261
Query 1386 TTCATCAAGATTCGCGGCTGA-AGATCATACATCGTGACCTCAAAGCGAGTAACATTCTC 1444
||||||| ||||| ||||| | | |||||||||||||| |||||||||||||||||||||
Sbjct 1262 TTCATCATGATTCACGGCTTACA-ATCATACATCGTGATCTCAAAGCGAGTAACATTCTC 1320
Query 1445 TTAGATGCGGATATGAATCCAAAAATCGCTGATTTCGGAATGGCAAGGATCTTTGGAGTG 1504
|||||||| ||||||| || ||||| || ||||| |||||||||||||| ||||||||
Sbjct 1321 TTAGATGCCAATATGAACCCCAAAATTGCAGATTTTGGAATGGCAAGGATTTTTGGAGTT 1380
Query 1505 GACCAAACTGTTGCCAATACAGGAAGAGTGGTTGGAACCTTTGGTTACATGTCTCCTGAG 1564
|| |||| | ||||| ||| ||||| | || ||||| |||||||| |||||||| ||
Sbjct 1381 GATCAAAGTCAAGCCAACACAAGAAGAATCGTCGGAACATTTGGTTATATGTCTCCAGAA 1440
Query 1565 TATGTGACACATGGCCAATTCTCAATGAAATCAGACGTCTATAGTTTTGGAGTATTGATT 1624
|||| | | |||||| ||||| ||||| || || |||||||| |||||| ||||| ||
Sbjct 1441 TATGCAATGCGTGGCCATTTCTCCATGAAGTCTGATGTCTATAGCTTTGGAATATTGGTT 1500
Query 1625 CTTGAGATCATTAGTGGCAAAAAGAA-TAGCAGCTTCTACCAA-ATGGATG 1673
|| ||| | || ||||||||||| || |||||| |||||| || || ||||
Sbjct 1501 CTGGAGGTTATAAGTGGCAAAAA-AACTAGCAGTTTCTAC-AACATTGATG 1549
> Ahg889852 jgi|Araly1|889852|Al_scaffold_0007_1838
Length=2088
Score = 228 bits (123), Expect = 2e-58
Identities = 214/257 (83%), Gaps = 10/257 (4%)
Strand=Plus/Plus
Query 1056 GTAACAAGCTTGGTAAAGGTGGATTCGGTGAAGTTTACAAGGG--TATGCTCATGAATGG 1113
|||| ||| ||||| |||||| || ||||| ||||||||||| || ||| |||||
Sbjct 1025 GTAATAAGATTGGTCGAGGTGGTTTTGGTGAGGTTTACAAGGGCACATTTTCA--AATGG 1082
Query 1114 CACTGAAATTGCGGTGAAGAGATTGTCGAAAACA-TCAGGACAAGGTGAAGTAGAGTTCA 1172
| ||| |||||||||||||||||||||||| | ||| ||||||| |||| ||||||||
Sbjct 1083 GAAAGAAGTTGCGGTGAAGAGATTGTCGAAAA-ATTCAAGACAAGGCGAAGCAGAGTTCA 1141
Query 1173 AGAACGAGGTTGTTGTTGTTGCAAAGCTTCAACACATAAATCTT-GTTAGACTTCTCGGG 1231
||| |||||||||||| |||||||||||||| |||| |||| || ||||| |||||||||
Sbjct 1142 AGACCGAGGTTGTTGTAGTTGCAAAGCTTCAGCACAGAAAT-TTGGTTAGGCTTCTCGGG 1200
Query 1232 TTTTCGCTACAAGGAGAAGAGAAGT-TACTCGTCTATGAGTTTGTTTCAAACAAAAGCCT 1290
|||||||||||||||||||| ||| || | ||||| |||| | | || |||||||||||
Sbjct 1201 TTTTCGCTACAAGGAGAAGA-AAGACTATTGGTCTACGAGTATATGTCCAACAAAAGCCT 1259
Query 1291 CGATTATTTCCTCTTTG 1307
||||| || |||||||
Sbjct 1260 TGATTACTTACTCTTTG 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82236838955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5