BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G23330.1

Length=1108
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919203 jgi|Araly1|919203|scaffold_100484.1                        246    2e-64
  Ahg915451 jgi|Araly1|915451|Al_scaffold_0008_202                     226    3e-58


> Ahg919203 jgi|Araly1|919203|scaffold_100484.1
Length=290

 Score =  246 bits (133),  Expect = 2e-64
 Identities = 206/239 (86%), Gaps = 13/239 (5%)
 Strand=Plus/Plus

Query  1    ATCGAGTACATTCACCGGAAAATGGATGCCGGAGCTGAAATTGATGTGGTTCGGCCGGTG  60
            |||||||||  |||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct  2    ATCGAGTAC--TCACCGGAAAATGGATGCCGAAGCTGAAATTGATGTGGCTCAGCCGGTG  59

Query  61   GAGG-CAGATTCGGCGGCGGAAATTAGTCCGGAACAAGACCACGAAGGAAGATCGGAGCC  119
            |||| || ||||| ||| ||||| | ||||||||||||| |||| ||| | |   || ||
Sbjct  60   GAGGACA-ATTCGTCGGAGGAAACTGGTCCGGAACAAGATCACGGAGG-A-A---GA-CC  112

Query  120  TTCGTCGTTGAACCAAGGGGAGATTTTAAAAACACTTGCTACGGTGGAGAAGGATTCGCA  179
               |  |||||| ||||| |||||||| | ||| ||||| ||||| ||||||||||||||
Sbjct  113  --AG-AGTTGAAACAAGGAGAGATTTTGAGAACCCTTGCAACGGTTGAGAAGGATTCGCA  169

Query  180  GGCAATCGCGGAGAGCTTTTCGTCTCTCTTTGTTTCCCTCCGATCAACTCTTTCTGAGG  238
            |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  170  GGCAATCGCGGAAAGCTTTTCGTCTCTCTTTGTTTCCCTCCGATCAACTCTCTCTGAGG  228


> Ahg915451 jgi|Araly1|915451|Al_scaffold_0008_202
Length=228

 Score =  226 bits (122),  Expect = 3e-58
 Identities = 188/218 (86%), Gaps = 11/218 (5%)
 Strand=Plus/Plus

Query  22   ATGGATGCCGGAGCTGAAATTGATGTGGTTCGGCCGGTGGAGG-CAGATTCGGCGGCGGA  80
            |||||||||| |||||||| ||||||||||||||||||||||| || ||||| ||| |||
Sbjct  1    ATGGATGCCGAAGCTGAAACTGATGTGGTTCGGCCGGTGGAGGACA-ATTCGTCGGAGGA  59

Query  81   AATTAGTCCGGAACAAGACCACGAAGGAAGATCGGAGCCTTCGTCGTTGAACCAAGGGGA  140
            || | ||||||||||||| |||| ||||||| |  ||     | |  |||| ||||| ||
Sbjct  60   AACTGGTCCGGAACAAGATCACGGAGGAAGA-C-CAG----AG-C--TGAAACAAGGAGA  110

Query  141  GATTTTAAAAACACTTGCTACGGTGGAGAAGGATTCGCAGGCAATCGCGGAGAGCTTTTC  200
            |||||| | ||| ||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct  111  GATTTTGAGAACCCTTGCAACGGTTGAGAAGGATTCGCAGGCAATCGCGGAAAGCTTTTC  170

Query  201  GTCTCTCTTTGTTTCCCTCCGATCAACTCTTTCTGAGG  238
            |||||||||||||||||||||||||||||| |||||||
Sbjct  171  GTCTCTCTTTGTTTCCCTCCGATCAACTCTCTCTGAGG  208



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41287119111


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5