BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G23340.1 Length=1241 Score E Sequences producing significant alignments: (Bits) Value Ahg492540 jgi|Araly1|492540|fgenesh2_kg.7__1973__AT4G23340.1 1463 0.0 > Ahg492540 jgi|Araly1|492540|fgenesh2_kg.7__1973__AT4G23340.1 Length=1209 Score = 1463 bits (792), Expect = 0.0 Identities = 933/1002 (93%), Gaps = 5/1002 (0%) Strand=Plus/Plus Query 1 ATGTCTGAACTTCATTCTTCTCTGCAGCTTCCTGTGTTAGACTTAACACAACCAATTGAG 60 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 ATGTCTGAACTTCAATCTTCTCTGCAGCTTCCTGTGTTAGACTTAACACAACCGATTGAG 60 Query 61 TCCTCTATACTGTCTTCTCTCTCTGAGGCTTGTAAAGAGTGGGGATTCTTCTATGTCACC 120 |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 TCCTCTGTTCTGTCTTCTCTCTCTGAAGCTTGTAAAGAGTGGGGATTCTTCTATGTCACC 120 Query 121 AATCATGGAATCTCTAAAGAGATGTTCAGCAAAATTTGTTCCTTGTCCAGAGATGTTTTC 180 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 121 AATCATGGAATCTCTAAAGAGATGTTCAGCAAAATCTGTTCCTTGTCCAGAGATGTTTTT 180 Query 181 AAAGCTCCTCTTGAATCAAAGCTCAAGCTTGGTCCCATTTCATATACTCCTCGGTACATC 240 |||| ||||||||||| ||||||||||||||||||| |||||||||||||||| || || Sbjct 181 AAAGTTCCTCTTGAATTAAAGCTCAAGCTTGGTCCCTTTTCATATACTCCTCGTTATATT 240 Query 241 GCCTCTCCTTATTTCGAAAGCCTTGTTGTCTCTGGACCTGATTTCTCTGATTCTGCCAAA 300 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 241 GCCTCTCCTTATTTCGAAAGCCTTGTTGTCTCTGGACCTGATTTCTCCGGTTCTGCCAAA 300 Query 301 GCTTCAGCAGATGTTTTGTTCCAAGATCATCATAAACCAGAGTTAAGAGAAACAA-TGCA 359 ||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 301 GCTTCTGCAGATGTTTTGTTCCAAGATCATCATAAACCAGAGTTAAGAGAAA-AACTGCA 359 Query 360 AGAATACGGAGCTAAAATGGCAGAATTGTCCAAAAGACTCATAAAGATTCTCTTGATGAT 419 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 360 AGAATACGGAGCTAAAATGGCGGAATTGTCCAAAAGACTCATAAAGATTCTCTTGATGAT 419 Query 420 GACTTTAGGAGATGAAACCGGAAAGAGACTCTACCAAACTGACTTTAGCAACTGTCATGG 479 || |||||||| |||||||| |||| | ||||||||||||| ||||||||||||||||| Sbjct 420 AACCTTAGGAGACGAAACCGGGAAGATATTCTACCAAACTGAGTTTAGCAACTGTCATGG 479 Query 480 ATACTTAAGGCTAGTGAACTACACACCTCCACACGACGTGGAGAAGCAAGAAGAGCTCGT 539 ||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| Sbjct 480 ATACTTAAGGCTAGTGAACTATACACCTCCACACGACGTAGAGAAGCAAAAAGAGCTCGT 539 Query 540 TGAAGGTCTCGGGATGCACACTGATATGAGCTGCATAACAATAGTCTATCAAGATTCCGT 599 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 540 TGAAGGTCTCGGGATGCACACGGATATGAGCTGCATAACAATAGTCTATCAAGATTCAGT 599 Query 600 TGGTGGGCTTCAGATGAGGTCTAAAGAAGGGAAATGGATCGATATAAACCCGTGCAACGA 659 |||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||| | || Sbjct 600 TGGTGGACTTCAAATGAGATCTAAGGAAGGGAAATGGATCGATATAAATCCGTGTGAGGA 659 Query 660 TTTCCTTGTTGTTAATATTGGAGACCTTATGCAAGCATGGAGTAATGGACGGCTGAGATC 719 | ||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| Sbjct 660 TCTCCTTGTCGTTAACATTGGAGATCTTATGCAAGCATGGAGTAACGGACGGCTGAGATC 719 Query 720 ATCTGAACATCGAGTTGTATTGAGAAAGTTGGTGAACAGAGTCTCTCTGGCGTTTTTTCT 779 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GTCTGAACATCGAGTTGTATTGAGAAAGTTGGTGAACAGAGTCTCTCTGGCGTTTTTTCT 779 Query 780 CTGTTTTGAGGATGAGAAAGTGATACTTGCACCTCAAGAAATTGT-GGGTGAGGGAAAAC 838 |||||||||||||||||||||||||||||| || ||||||| || ||| |||||||| Sbjct 780 CTGTTTTGAGGATGAGAAAGTGATACTTGCGCCAGAAGAAATCGTTGGG-GAGGGAAATT 838 Query 839 AAAGAAGCTACAAGTCGTTTAAGTGTTCGGAGTACCTGAAGTTCAGACAGAGCAATGAAG 898 || ||||||||||| |||||||||||||| || ||||||||||||||||| ||||||| Sbjct 839 GCAGGAGCTACAAGTCTTTTAAGTGTTCGGACTATCTGAAGTTCAGACAGAGTAATGAAG 898 Query 899 AAGGGAAGTTTGAGAAGATTGGTTTCACTGTCAAAGACTTTGCTGGACTAAAGCTGGCTC 958 ||| ||||||||||||||||||| |||||| | ||||||||||||||| | |||||||| Sbjct 899 TAGGAAAGTTTGAGAAGATTGGTTACACTGTTACAGACTTTGCTGGACTTACGCTGGCTC 958 Query 959 AACCAGATGATCCTTAGAGACCAAACTG-GTGTTTCGGTTTA 999 |||||||||||||||||||||||||| | ||||||||||||| Sbjct 959 AACCAGATGATCCTTAGAGACCAAACCGCGTGTTTCGGTTTA 1000 Score = 274 bits (148), Expect = 1e-72 Identities = 195/215 (91%), Gaps = 13/215 (6%) Strand=Plus/Plus Query 1033 TATTGTTGCGAGTGTTAACTAGTGGAATCAAAAG---CTTTTGGATTT-GATTTTTGTAT 1088 ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| Sbjct 999 TATTGTTGCGAGTGTTAACTAGTGGAATCCAAAGCTACTTTTGGATTTAGATTTTTGTAT 1058 Query 1089 TAAAAAATGTTCT-GAGT-TTTTCTATAACCATCTAAAGTAATGTTTCAGAGGTTTTTCG 1146 | ||||||||| | |||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1059 T-AAAAATGTT-TGGAGTCTTTTCTATTACCATCTAAAGTAATGTTTCAGAGGTTTTTCG 1116 Query 1147 ACATGTTTATTCAAAGTGGGAGTTTTTGTCAAAGCCAA-CATCATATGTATTCAGTTTCA 1205 ||| ||||||||||||||||||| ||||||| || || ||||||||||||||||||||| Sbjct 1117 ACAAGTTTATTCAAAGTGGGAGTACTTGTCAA-GCTAAACATCATATGTATTCAGTTTCA 1175 Query 1206 AT-GTGAACAAAGAAGCGTAAGA-TAGACCCACAA 1238 || |||||||||||||| ||||| | ||||||||| Sbjct 1176 ATTGTGAACAAAGAAGCATAAGACT-GACCCACAA 1209 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46357467072 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5