BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23340.1
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492540 jgi|Araly1|492540|fgenesh2_kg.7__1973__AT4G23340.1 1463 0.0
> Ahg492540 jgi|Araly1|492540|fgenesh2_kg.7__1973__AT4G23340.1
Length=1209
Score = 1463 bits (792), Expect = 0.0
Identities = 933/1002 (93%), Gaps = 5/1002 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGAACTTCATTCTTCTCTGCAGCTTCCTGTGTTAGACTTAACACAACCAATTGAG 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTCTGAACTTCAATCTTCTCTGCAGCTTCCTGTGTTAGACTTAACACAACCGATTGAG 60
Query 61 TCCTCTATACTGTCTTCTCTCTCTGAGGCTTGTAAAGAGTGGGGATTCTTCTATGTCACC 120
|||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCCTCTGTTCTGTCTTCTCTCTCTGAAGCTTGTAAAGAGTGGGGATTCTTCTATGTCACC 120
Query 121 AATCATGGAATCTCTAAAGAGATGTTCAGCAAAATTTGTTCCTTGTCCAGAGATGTTTTC 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 AATCATGGAATCTCTAAAGAGATGTTCAGCAAAATCTGTTCCTTGTCCAGAGATGTTTTT 180
Query 181 AAAGCTCCTCTTGAATCAAAGCTCAAGCTTGGTCCCATTTCATATACTCCTCGGTACATC 240
|||| ||||||||||| ||||||||||||||||||| |||||||||||||||| || ||
Sbjct 181 AAAGTTCCTCTTGAATTAAAGCTCAAGCTTGGTCCCTTTTCATATACTCCTCGTTATATT 240
Query 241 GCCTCTCCTTATTTCGAAAGCCTTGTTGTCTCTGGACCTGATTTCTCTGATTCTGCCAAA 300
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 241 GCCTCTCCTTATTTCGAAAGCCTTGTTGTCTCTGGACCTGATTTCTCCGGTTCTGCCAAA 300
Query 301 GCTTCAGCAGATGTTTTGTTCCAAGATCATCATAAACCAGAGTTAAGAGAAACAA-TGCA 359
||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 301 GCTTCTGCAGATGTTTTGTTCCAAGATCATCATAAACCAGAGTTAAGAGAAA-AACTGCA 359
Query 360 AGAATACGGAGCTAAAATGGCAGAATTGTCCAAAAGACTCATAAAGATTCTCTTGATGAT 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGAATACGGAGCTAAAATGGCGGAATTGTCCAAAAGACTCATAAAGATTCTCTTGATGAT 419
Query 420 GACTTTAGGAGATGAAACCGGAAAGAGACTCTACCAAACTGACTTTAGCAACTGTCATGG 479
|| |||||||| |||||||| |||| | ||||||||||||| |||||||||||||||||
Sbjct 420 AACCTTAGGAGACGAAACCGGGAAGATATTCTACCAAACTGAGTTTAGCAACTGTCATGG 479
Query 480 ATACTTAAGGCTAGTGAACTACACACCTCCACACGACGTGGAGAAGCAAGAAGAGCTCGT 539
||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||
Sbjct 480 ATACTTAAGGCTAGTGAACTATACACCTCCACACGACGTAGAGAAGCAAAAAGAGCTCGT 539
Query 540 TGAAGGTCTCGGGATGCACACTGATATGAGCTGCATAACAATAGTCTATCAAGATTCCGT 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 540 TGAAGGTCTCGGGATGCACACGGATATGAGCTGCATAACAATAGTCTATCAAGATTCAGT 599
Query 600 TGGTGGGCTTCAGATGAGGTCTAAAGAAGGGAAATGGATCGATATAAACCCGTGCAACGA 659
|||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||| | ||
Sbjct 600 TGGTGGACTTCAAATGAGATCTAAGGAAGGGAAATGGATCGATATAAATCCGTGTGAGGA 659
Query 660 TTTCCTTGTTGTTAATATTGGAGACCTTATGCAAGCATGGAGTAATGGACGGCTGAGATC 719
| ||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 660 TCTCCTTGTCGTTAACATTGGAGATCTTATGCAAGCATGGAGTAACGGACGGCTGAGATC 719
Query 720 ATCTGAACATCGAGTTGTATTGAGAAAGTTGGTGAACAGAGTCTCTCTGGCGTTTTTTCT 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTCTGAACATCGAGTTGTATTGAGAAAGTTGGTGAACAGAGTCTCTCTGGCGTTTTTTCT 779
Query 780 CTGTTTTGAGGATGAGAAAGTGATACTTGCACCTCAAGAAATTGT-GGGTGAGGGAAAAC 838
|||||||||||||||||||||||||||||| || ||||||| || ||| ||||||||
Sbjct 780 CTGTTTTGAGGATGAGAAAGTGATACTTGCGCCAGAAGAAATCGTTGGG-GAGGGAAATT 838
Query 839 AAAGAAGCTACAAGTCGTTTAAGTGTTCGGAGTACCTGAAGTTCAGACAGAGCAATGAAG 898
|| ||||||||||| |||||||||||||| || ||||||||||||||||| |||||||
Sbjct 839 GCAGGAGCTACAAGTCTTTTAAGTGTTCGGACTATCTGAAGTTCAGACAGAGTAATGAAG 898
Query 899 AAGGGAAGTTTGAGAAGATTGGTTTCACTGTCAAAGACTTTGCTGGACTAAAGCTGGCTC 958
||| ||||||||||||||||||| |||||| | ||||||||||||||| | ||||||||
Sbjct 899 TAGGAAAGTTTGAGAAGATTGGTTACACTGTTACAGACTTTGCTGGACTTACGCTGGCTC 958
Query 959 AACCAGATGATCCTTAGAGACCAAACTG-GTGTTTCGGTTTA 999
|||||||||||||||||||||||||| | |||||||||||||
Sbjct 959 AACCAGATGATCCTTAGAGACCAAACCGCGTGTTTCGGTTTA 1000
Score = 274 bits (148), Expect = 1e-72
Identities = 195/215 (91%), Gaps = 13/215 (6%)
Strand=Plus/Plus
Query 1033 TATTGTTGCGAGTGTTAACTAGTGGAATCAAAAG---CTTTTGGATTT-GATTTTTGTAT 1088
||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||
Sbjct 999 TATTGTTGCGAGTGTTAACTAGTGGAATCCAAAGCTACTTTTGGATTTAGATTTTTGTAT 1058
Query 1089 TAAAAAATGTTCT-GAGT-TTTTCTATAACCATCTAAAGTAATGTTTCAGAGGTTTTTCG 1146
| ||||||||| | |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1059 T-AAAAATGTT-TGGAGTCTTTTCTATTACCATCTAAAGTAATGTTTCAGAGGTTTTTCG 1116
Query 1147 ACATGTTTATTCAAAGTGGGAGTTTTTGTCAAAGCCAA-CATCATATGTATTCAGTTTCA 1205
||| ||||||||||||||||||| ||||||| || || |||||||||||||||||||||
Sbjct 1117 ACAAGTTTATTCAAAGTGGGAGTACTTGTCAA-GCTAAACATCATATGTATTCAGTTTCA 1175
Query 1206 AT-GTGAACAAAGAAGCGTAAGA-TAGACCCACAA 1238
|| |||||||||||||| ||||| | |||||||||
Sbjct 1176 ATTGTGAACAAAGAAGCATAAGACT-GACCCACAA 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5