BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23350.1
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354433 jgi|Araly1|354433|fgenesh1_pg.C_scaffold_7001606 1570 0.0
Ahg492539 jgi|Araly1|492539|fgenesh2_kg.7__1972__AT4G23370.1 737 0.0
> Ahg354433 jgi|Araly1|354433|fgenesh1_pg.C_scaffold_7001606
Length=1212
Score = 1570 bits (850), Expect = 0.0
Identities = 1106/1227 (90%), Gaps = 27/1227 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCCTTCAACCACTTTGTGTTACTGCTTCTGTTAATAATCACTCTTATTCTATCC 60
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 1 ATGGCTTCCTTCAACCACTTTGTGTTACTGATTCTGTTAACAATCACTCTTATTTTATCC 60
Query 61 GCTGAAGCAACTAAGGAACGCCGAGCAATACCATCAAAGGCAGA-AAGGAATGAAATGAA 119
|||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| |
Sbjct 61 GCTGAAGCAACTAAGGAACGCCGAGCAATACCATCAAAGGCAGAGAA-GAAAGAAATGGA 119
Query 120 GAGACAACTCAAAGCTATCAACAAGCCTGCAATCAAGAGTTTCAAGACTGAACATGGTGA 179
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 120 GAGACAACTCAAAGCTATCAACAAACCTGCAATCAAGAGTTTCAAGACTAAACATGGTGA 179
Query 180 TATATTCGATTGTATCGATATTCACAAACAACTAGCATTTGATCATCACCTACTAAAAAA 239
|||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 180 TATATTCGATTGTATCGAAATTCACAAACAACTAGCGTTTGATCATCATCTACTCAAAAA 239
Query 240 CCACTCTGTTCAGCTAAGGCCAACAACAGTACCTGAATATATCACTGGAAACAACATTTC 299
||||||||||||||||| ||||||||| |||||||||| |||||||||||||| |||
Sbjct 240 CCACTCTGTTCAGCTAAAGCCAACAACTGTACCTGAATGGATCACTGGAAACAATGGTTC 299
Query 300 AGAGAGTTTTAG-TCTTTTGCAAGAAGGTATAAGCTGTCCAGATGGCACAGTAATTGTAA 358
| ||||||| | |||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 300 GGGGAGTTTT-GATCTTCTGCAAGAAGGTATAAGCTGTCCAGATGGAACAGTAATTGTAA 358
Query 359 AAAGGACTACAATGCAAGATCTTATGCATGCACAACGTTTGAAATCCATGGGATTCGAGG 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 359 AAAGGACTACAATGCAAGATCTTATGCATGCACAACGTTTGAAATCCATGGGATTCGACG 418
Query 419 GCCCGAGACCTTTTCTCACAGAGA-CAAACAACA-TGAATTTTAATGGAAAATTCTACGA 476
|||||||||||||||||| ||||| ||| |||| | ||||| |||||||||||||||
Sbjct 419 GCCCGAGACCTTTTCTCAAAGAGAGCAAT-AACACT-AATTTAAATGGAAAATTCTACTT 476
Query 477 TGCAAGAGCTGATTATGGACCGAACCCTTTTGCTGGAGTTGCAGGAAACATTAACATATG 536
||||| |||||| ||||||||| | | ||||| |||||| ||||||||||||| ||||
Sbjct 477 TGCAACAGCTGACTATGGACCGGATCGTTTTGGTGGAGTAAAAGGAAACATTAACGTATG 536
Query 537 GAAACCAAAAATCTTGCAAGATCAAGTTAGTATTGGATACATGGCAGTTAGTGGGGGGCC 596
||||||||| ||||||||||||||||||||||| | |||||| ||||||||||| ||||
Sbjct 537 GAAACCAAATATCTTGCAAGATCAAGTTAGTATCGCATACATAGCAGTTAGTGGAGGGCG 596
Query 597 TATTGAAGAAGATTTCGCCAGCATTTCAGTTGGATGGATTGTGAATCCATCGATGCAC-C 655
|||||||||| |||| ||||||||||||||||||||| | ||||||||||||||| || |
Sbjct 597 TATTGAAGAAAATTTGGCCAGCATTTCAGTTGGATGGGTGGTGAATCCATCGATGTACTC 656
Query 656 ATGGTGATCATGTTCGTTTATACGCCTACTGGACTTTACATGGAAGCA-GTACTGGCGGC 714
|||||||||||||||||||||||||||||||||| |||||||| || | || ||||
Sbjct 657 -TGGTGATCATGTTCGTTTATACGCCTACTGGACTACACATGGAAACATG-AC---CGGC 711
Query 715 TGCTACGGCATGTCATGTCCTGGATTTGTGCAAGTTAGCAAGACTATACCAGTTGGTGCC 774
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 712 TGCTACGCCATGTCATGTCCTGGATTTGTGCAAGTTAGCAAGACTATACCAGTTAGTGCC 771
Query 775 GTTCTTCAACCATTTTCCATCTATAATGGTCGACAATATGAATTGCGTTT-AGGCTTGTT 833
||||||||||| ||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 772 ATTCTTCAACCAAGTTCCATCTATAATGGTCCACAATATGAATTGCGTTTGAG-CTTGTA 830
Query 834 TCAGGATAGTGGCACGGGAAATTGGTGGTTTGTATTTAAAGAGGAGATTATTGGATACTG 893
||||||| ||| || |||| |||||||||||| ||||||||| || | ||||||||||
Sbjct 831 TCAGGATCGTGTCAAGGGAGATTGGTGGTTTGCATTTAAAGATGAAAACGTTGGATACTG 890
Query 894 GCCAGCATCATTGTTCAAGTCCTGGATGGAATCTAACAGCGCAAATTATGCATCTTGGGG 953
|||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||
Sbjct 891 GCCAGCATCATTGTTCAAGTCCTGGAGGGAATCTAACAGCGCAAATCATGCATTTTGGGG 950
Query 954 AGGGCAAGTGTATAGCCCTATCAGAGAGAAGAGTCCACCTATGGGAAGTGGTCATTGGCC 1013
||| ||||||||||||||| | | |||||||| |||||||||||||||||||||||||||
Sbjct 951 AGGTCAAGTGTATAGCCCTGTGACAGAGAAGACTCCACCTATGGGAAGTGGTCATTGGCC 1010
Query 1014 TAGTGAGGGCTTTCATAAAGCTGCTTTTATTAGTGGCCTC-AAACTCTTCGATGGTCACG 1072
|||||||||||| |||||||||||||||||||| |||||| ||| || | |||||| | |
Sbjct 1011 TAGTGAGGGCTTCCATAAAGCTGCTTTTATTAGCGGCCTCCAAA-TCATGGATGGTTATG 1069
Query 1073 GGAA-AGTTTATAATCCAGGACGCGGG-ACAGTGAAGGTACATGAGAGCAGACCAATCTG 1130
| || ||||| |||||||| | |||| ||||||||||||||||||||||||| || |||
Sbjct 1070 G-AACAGTTTTTAATCCAGAAT-CGGGTACAGTGAAGGTACATGAGAGCAGACGAAACTG 1127
Query 1131 TTACAAAGCCAGATATGTTCATGATGTTGATAAACCTTGGTTAAAA-TCTGTTTACTT-T 1188
|||||||||||||||||||||||| |||| ||| |||||| |||| ||||||| || |
Sbjct 1128 TTACAAAGCCAGATATGTTCATGAGGTTGCTAAGCCTTGGA-AAAAGTCTGTTTT-TTAT 1185
Query 1189 GGAGGTCCTGGAGGGTGCATAGGGTAA 1215
|||||||||||||| ||||||||||||
Sbjct 1186 GGAGGTCCTGGAGGATGCATAGGGTAA 1212
> Ahg492539 jgi|Araly1|492539|fgenesh2_kg.7__1972__AT4G23370.1
Length=3012
Score = 737 bits (399), Expect = 0.0
Identities = 560/636 (88%), Gaps = 17/636 (3%)
Strand=Plus/Plus
Query 62 CTGAAGCAACTAAGGAACGCCGAGCAATACCATCAAAGGCAGAAAGGAATGAAATGAAGA 121
||| ||||||||| |||||| ||||||||| | |||||||||| | ||| |||||| |||
Sbjct 1823 CTGTAGCAACTAAAGAACGCAGAGCAATACAAACAAAGGCAGAGATGAAAGAAATGGAGA 1882
Query 122 GACAACTCAAAGCTATCAACAAGCCTGCAATCAAGAGTTTCAAGACTGAACATGGTGATA 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 GACAACTCAAAGCTATCAACAAGCCTGCAATCAAGAGTTTCAAGACTGAACATGGTGATA 1942
Query 182 TATTCGATTGTATCGATATTCACAAACAACTAGCATTTGATCATCAC-CTACTAAAAAAC 240
|||||||||||||| | |||||||||||||||||||||||||||| | |||||||||||
Sbjct 1943 TATTCGATTGTATCAAAATTCACAAACAACTAGCATTTGATCATC-CTCTACTAAAAAAT 2001
Query 241 CACTCTGTTCAGCTAAGGCCAACAACAGTACCTGAATATATCACTGGAAACAACATTTCA 300
|||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 2002 CACTCTGTTCAGCTAAAGCCAACAACTGTACCTGAATGGATCACTGGAAACAACATTTCA 2061
Query 301 GAGAGTTTT-AGTCTTTTGCAAGAAGGTATAAGCTGTCCAGATGGCACAGTAATTGTAAA 359
| || ||| | |||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2062 GGGACATTTGA-TCTTCTGCAAGAAGGTATAAGCTGTCCAGATGGAACAGTAATTGTAAA 2120
Query 360 AAGGACTACAATGCAAGATCTTATGCATGCACAACGTTTGAAATCCATGGGATTCGAGGG 419
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | ||
Sbjct 2121 AAGGACAACAATGCAAGATCTTATGCATGCAAAACGTTTGAAATCCATGGGATTCAACGG 2180
Query 420 CCCGAGACCTTTTCTCACAGAGACAAACAACA-TGAATTTTAATGGAAAATTCTACGATG 478
||||||||||||||||| ||||| ||| |||| | |||| ||||||| ||||||| ||
Sbjct 2181 CCCGAGACCTTTTCTCAAAGAGAGAAATAACACT-AATTCAAATGGAATATTCTACTTTG 2239
Query 479 CAAGAGCTGA-TTATGGACCGAACCCTTTTGCTGGAGTTGCAGGAAACATTAACATATGG 537
||| |||||| || ||||||| | |||| ||||||| |||||||||||||||||||
Sbjct 2240 CAAAAGCTGACTT-TGGACCGGATAGTTTTTCTGGAGTAAAAGGAAACATTAACATATGG 2298
Query 538 AAACCAAAAATCTTGCAAGATCAAGTTAGTATTGGATACATG-GCAGTTAGTGGGGGGCC 596
|||||||||||||||| ||||||||||||| ||| || ||| || ||| |||| |||||
Sbjct 2299 AAACCAAAAATCTTGCTAGATCAAGTTAGTTTTGCATTCATAAGC-GTTGGTGGAGGGCC 2357
Query 597 TATTGAAGAAGATTTCGCCAGCATTTCAGTTGGATGGATTGTGAATCCATCGATGC-ACC 655
|| ||| || ||| |||||||||||||| ||| ||||| |||||||||||| | | ||
Sbjct 2358 TAAAGAA-AA-ATT-CGCCAGCATTTCAGCTGGGTGGATGGTGAATCCATCGCT-CTACT 2413
Query 656 ATGGTGATCATGTTCGTTTATACGCCT-ACTGGACT 690
| |||||| ||||||| |||||||||| | ||||||
Sbjct 2414 ACGGTGATTATGTTCGCTTATACGCCTCA-TGGACT 2448
Score = 507 bits (274), Expect = 1e-142
Identities = 433/509 (85%), Gaps = 14/509 (3%)
Strand=Plus/Plus
Query 711 CGGCTGCTACGGCATGTCATGTCCTGGATTTGTGCAAGTTAGCAAGACTATACCAGTTGG 770
||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 2505 CGGCTGCTACGACATGTCATGTCCTGGATTTGTGCAAGTTAGCAAGACTACACCAATTAG 2564
Query 771 TGCCGTTCTTCAACCATTTTCCATCTATAATGGTCGACAATATGAATTGCGTTT-AGGCT 829
|||| ||||||||||| |||| |||||| |||||| ||| |||||||||||||| || ||
Sbjct 2565 TGCCATTCTTCAACCAATTTCGATCTATGATGGTCCACAGTATGAATTGCGTTTGAG-CT 2623
Query 830 TGTTTCAGGATAGTGG-CACGGGAAATTGGTGGTTTGTATTTAAAGAGGAGATTATTGGA 888
||| ||||||| | || || |||| |||||||||||| |||||| || |||| || |||
Sbjct 2624 TGTATCAGGATCG-GGTCAAGGGAGATTGGTGGTTTGCATTTAAGGATGAGAACATCGGA 2682
Query 889 TACTGGCCAGCATCATTGTTCAAGTCCTGGATGGAATCTAACAGCGCAAATTATGCATCT 948
|||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||
Sbjct 2683 TACTGGCCAGCATCATTGTTGAAGTCCTGGAGGGAATCTAACAACGCAAATTATGCATCT 2742
Query 949 TGGGGAGGGCAAGTGTATAGCCCTA-TCAGAGAGAAGAG-TCCACCTATGGGAAGTGGTC 1006
|||||||| |||||||| ||||| | | | ||||||| | || ||||||||||||||
Sbjct 2743 TGGGGAGGTCAAGTGTACAGCCC-AGTGACAGAGAAG-GCTCTTGTTATGGGAAGTGGTC 2800
Query 1007 ATTGGCCTAGTGAGGGCTTTCATAAAGCTGCTTTTATTAGTGGCCTCAAACTCTTCGAT- 1065
||||||||| || ||| || | ||||| || | | | || ||| ||||| || |||||
Sbjct 2801 ATTGGCCTATTGGGGGATTAAAAAAAGCAGCCTATGTGAGCGGCATCAAAATCATCGATA 2860
Query 1066 GGTCACGGGAAAGTTTATA-ATCCAGGACGCGGGA-CAGTGAAGGTACATGAGAGCAGAC 1123
|||| |||| ||||| | |||||| | | || ||||||||||||||||||||||||
Sbjct 2861 GGTCG-GGGACAGTTT-TCGATCCAGAA-GTTGGTTCAGTGAAGGTACATGAGAGCAGAC 2917
Query 1124 CAATCTGTTACAAAGCCAGATATGTTCATGATGTTGATAAACCTTGGTTAAAATCTGTTT 1183
||| |||||||||||||| |||||||||||| | |||| | |||||||||| | ||||||
Sbjct 2918 CAAACTGTTACAAAGCCATATATGTTCATGAAGATGATGAGCCTTGGTTAAGAGCTGTTT 2977
Query 1184 ACTTTGGAGGTCCTGGAGGGTGCATAGGG 1212
||||||||||||||||||| |||||||||
Sbjct 2978 ACTTTGGAGGTCCTGGAGGATGCATAGGG 3006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50436619191
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5