BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G23350.1 Length=1348 Score E Sequences producing significant alignments: (Bits) Value Ahg354433 jgi|Araly1|354433|fgenesh1_pg.C_scaffold_7001606 1570 0.0 Ahg492539 jgi|Araly1|492539|fgenesh2_kg.7__1972__AT4G23370.1 737 0.0 > Ahg354433 jgi|Araly1|354433|fgenesh1_pg.C_scaffold_7001606 Length=1212 Score = 1570 bits (850), Expect = 0.0 Identities = 1106/1227 (90%), Gaps = 27/1227 (2%) Strand=Plus/Plus Query 1 ATGGCTTCCTTCAACCACTTTGTGTTACTGCTTCTGTTAATAATCACTCTTATTCTATCC 60 |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| Sbjct 1 ATGGCTTCCTTCAACCACTTTGTGTTACTGATTCTGTTAACAATCACTCTTATTTTATCC 60 Query 61 GCTGAAGCAACTAAGGAACGCCGAGCAATACCATCAAAGGCAGA-AAGGAATGAAATGAA 119 |||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| | Sbjct 61 GCTGAAGCAACTAAGGAACGCCGAGCAATACCATCAAAGGCAGAGAA-GAAAGAAATGGA 119 Query 120 GAGACAACTCAAAGCTATCAACAAGCCTGCAATCAAGAGTTTCAAGACTGAACATGGTGA 179 |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 120 GAGACAACTCAAAGCTATCAACAAACCTGCAATCAAGAGTTTCAAGACTAAACATGGTGA 179 Query 180 TATATTCGATTGTATCGATATTCACAAACAACTAGCATTTGATCATCACCTACTAAAAAA 239 |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 180 TATATTCGATTGTATCGAAATTCACAAACAACTAGCGTTTGATCATCATCTACTCAAAAA 239 Query 240 CCACTCTGTTCAGCTAAGGCCAACAACAGTACCTGAATATATCACTGGAAACAACATTTC 299 ||||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||| Sbjct 240 CCACTCTGTTCAGCTAAAGCCAACAACTGTACCTGAATGGATCACTGGAAACAATGGTTC 299 Query 300 AGAGAGTTTTAG-TCTTTTGCAAGAAGGTATAAGCTGTCCAGATGGCACAGTAATTGTAA 358 | ||||||| | |||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 300 GGGGAGTTTT-GATCTTCTGCAAGAAGGTATAAGCTGTCCAGATGGAACAGTAATTGTAA 358 Query 359 AAAGGACTACAATGCAAGATCTTATGCATGCACAACGTTTGAAATCCATGGGATTCGAGG 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 359 AAAGGACTACAATGCAAGATCTTATGCATGCACAACGTTTGAAATCCATGGGATTCGACG 418 Query 419 GCCCGAGACCTTTTCTCACAGAGA-CAAACAACA-TGAATTTTAATGGAAAATTCTACGA 476 |||||||||||||||||| ||||| ||| |||| | ||||| ||||||||||||||| Sbjct 419 GCCCGAGACCTTTTCTCAAAGAGAGCAAT-AACACT-AATTTAAATGGAAAATTCTACTT 476 Query 477 TGCAAGAGCTGATTATGGACCGAACCCTTTTGCTGGAGTTGCAGGAAACATTAACATATG 536 ||||| |||||| ||||||||| | | ||||| |||||| ||||||||||||| |||| Sbjct 477 TGCAACAGCTGACTATGGACCGGATCGTTTTGGTGGAGTAAAAGGAAACATTAACGTATG 536 Query 537 GAAACCAAAAATCTTGCAAGATCAAGTTAGTATTGGATACATGGCAGTTAGTGGGGGGCC 596 ||||||||| ||||||||||||||||||||||| | |||||| ||||||||||| |||| Sbjct 537 GAAACCAAATATCTTGCAAGATCAAGTTAGTATCGCATACATAGCAGTTAGTGGAGGGCG 596 Query 597 TATTGAAGAAGATTTCGCCAGCATTTCAGTTGGATGGATTGTGAATCCATCGATGCAC-C 655 |||||||||| |||| ||||||||||||||||||||| | ||||||||||||||| || | Sbjct 597 TATTGAAGAAAATTTGGCCAGCATTTCAGTTGGATGGGTGGTGAATCCATCGATGTACTC 656 Query 656 ATGGTGATCATGTTCGTTTATACGCCTACTGGACTTTACATGGAAGCA-GTACTGGCGGC 714 |||||||||||||||||||||||||||||||||| |||||||| || | || |||| Sbjct 657 -TGGTGATCATGTTCGTTTATACGCCTACTGGACTACACATGGAAACATG-AC---CGGC 711 Query 715 TGCTACGGCATGTCATGTCCTGGATTTGTGCAAGTTAGCAAGACTATACCAGTTGGTGCC 774 ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 712 TGCTACGCCATGTCATGTCCTGGATTTGTGCAAGTTAGCAAGACTATACCAGTTAGTGCC 771 Query 775 GTTCTTCAACCATTTTCCATCTATAATGGTCGACAATATGAATTGCGTTT-AGGCTTGTT 833 ||||||||||| ||||||||||||||||| |||||||||||||||||| || ||||| Sbjct 772 ATTCTTCAACCAAGTTCCATCTATAATGGTCCACAATATGAATTGCGTTTGAG-CTTGTA 830 Query 834 TCAGGATAGTGGCACGGGAAATTGGTGGTTTGTATTTAAAGAGGAGATTATTGGATACTG 893 ||||||| ||| || |||| |||||||||||| ||||||||| || | |||||||||| Sbjct 831 TCAGGATCGTGTCAAGGGAGATTGGTGGTTTGCATTTAAAGATGAAAACGTTGGATACTG 890 Query 894 GCCAGCATCATTGTTCAAGTCCTGGATGGAATCTAACAGCGCAAATTATGCATCTTGGGG 953 |||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| Sbjct 891 GCCAGCATCATTGTTCAAGTCCTGGAGGGAATCTAACAGCGCAAATCATGCATTTTGGGG 950 Query 954 AGGGCAAGTGTATAGCCCTATCAGAGAGAAGAGTCCACCTATGGGAAGTGGTCATTGGCC 1013 ||| ||||||||||||||| | | |||||||| ||||||||||||||||||||||||||| Sbjct 951 AGGTCAAGTGTATAGCCCTGTGACAGAGAAGACTCCACCTATGGGAAGTGGTCATTGGCC 1010 Query 1014 TAGTGAGGGCTTTCATAAAGCTGCTTTTATTAGTGGCCTC-AAACTCTTCGATGGTCACG 1072 |||||||||||| |||||||||||||||||||| |||||| ||| || | |||||| | | Sbjct 1011 TAGTGAGGGCTTCCATAAAGCTGCTTTTATTAGCGGCCTCCAAA-TCATGGATGGTTATG 1069 Query 1073 GGAA-AGTTTATAATCCAGGACGCGGG-ACAGTGAAGGTACATGAGAGCAGACCAATCTG 1130 | || ||||| |||||||| | |||| ||||||||||||||||||||||||| || ||| Sbjct 1070 G-AACAGTTTTTAATCCAGAAT-CGGGTACAGTGAAGGTACATGAGAGCAGACGAAACTG 1127 Query 1131 TTACAAAGCCAGATATGTTCATGATGTTGATAAACCTTGGTTAAAA-TCTGTTTACTT-T 1188 |||||||||||||||||||||||| |||| ||| |||||| |||| ||||||| || | Sbjct 1128 TTACAAAGCCAGATATGTTCATGAGGTTGCTAAGCCTTGGA-AAAAGTCTGTTTT-TTAT 1185 Query 1189 GGAGGTCCTGGAGGGTGCATAGGGTAA 1215 |||||||||||||| |||||||||||| Sbjct 1186 GGAGGTCCTGGAGGATGCATAGGGTAA 1212 > Ahg492539 jgi|Araly1|492539|fgenesh2_kg.7__1972__AT4G23370.1 Length=3012 Score = 737 bits (399), Expect = 0.0 Identities = 560/636 (88%), Gaps = 17/636 (3%) Strand=Plus/Plus Query 62 CTGAAGCAACTAAGGAACGCCGAGCAATACCATCAAAGGCAGAAAGGAATGAAATGAAGA 121 ||| ||||||||| |||||| ||||||||| | |||||||||| | ||| |||||| ||| Sbjct 1823 CTGTAGCAACTAAAGAACGCAGAGCAATACAAACAAAGGCAGAGATGAAAGAAATGGAGA 1882 Query 122 GACAACTCAAAGCTATCAACAAGCCTGCAATCAAGAGTTTCAAGACTGAACATGGTGATA 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1883 GACAACTCAAAGCTATCAACAAGCCTGCAATCAAGAGTTTCAAGACTGAACATGGTGATA 1942 Query 182 TATTCGATTGTATCGATATTCACAAACAACTAGCATTTGATCATCAC-CTACTAAAAAAC 240 |||||||||||||| | |||||||||||||||||||||||||||| | ||||||||||| Sbjct 1943 TATTCGATTGTATCAAAATTCACAAACAACTAGCATTTGATCATC-CTCTACTAAAAAAT 2001 Query 241 CACTCTGTTCAGCTAAGGCCAACAACAGTACCTGAATATATCACTGGAAACAACATTTCA 300 |||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 2002 CACTCTGTTCAGCTAAAGCCAACAACTGTACCTGAATGGATCACTGGAAACAACATTTCA 2061 Query 301 GAGAGTTTT-AGTCTTTTGCAAGAAGGTATAAGCTGTCCAGATGGCACAGTAATTGTAAA 359 | || ||| | |||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 2062 GGGACATTTGA-TCTTCTGCAAGAAGGTATAAGCTGTCCAGATGGAACAGTAATTGTAAA 2120 Query 360 AAGGACTACAATGCAAGATCTTATGCATGCACAACGTTTGAAATCCATGGGATTCGAGGG 419 |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | || Sbjct 2121 AAGGACAACAATGCAAGATCTTATGCATGCAAAACGTTTGAAATCCATGGGATTCAACGG 2180 Query 420 CCCGAGACCTTTTCTCACAGAGACAAACAACA-TGAATTTTAATGGAAAATTCTACGATG 478 ||||||||||||||||| ||||| ||| |||| | |||| ||||||| ||||||| || Sbjct 2181 CCCGAGACCTTTTCTCAAAGAGAGAAATAACACT-AATTCAAATGGAATATTCTACTTTG 2239 Query 479 CAAGAGCTGA-TTATGGACCGAACCCTTTTGCTGGAGTTGCAGGAAACATTAACATATGG 537 ||| |||||| || ||||||| | |||| ||||||| ||||||||||||||||||| Sbjct 2240 CAAAAGCTGACTT-TGGACCGGATAGTTTTTCTGGAGTAAAAGGAAACATTAACATATGG 2298 Query 538 AAACCAAAAATCTTGCAAGATCAAGTTAGTATTGGATACATG-GCAGTTAGTGGGGGGCC 596 |||||||||||||||| ||||||||||||| ||| || ||| || ||| |||| ||||| Sbjct 2299 AAACCAAAAATCTTGCTAGATCAAGTTAGTTTTGCATTCATAAGC-GTTGGTGGAGGGCC 2357 Query 597 TATTGAAGAAGATTTCGCCAGCATTTCAGTTGGATGGATTGTGAATCCATCGATGC-ACC 655 || ||| || ||| |||||||||||||| ||| ||||| |||||||||||| | | || Sbjct 2358 TAAAGAA-AA-ATT-CGCCAGCATTTCAGCTGGGTGGATGGTGAATCCATCGCT-CTACT 2413 Query 656 ATGGTGATCATGTTCGTTTATACGCCT-ACTGGACT 690 | |||||| ||||||| |||||||||| | |||||| Sbjct 2414 ACGGTGATTATGTTCGCTTATACGCCTCA-TGGACT 2448 Score = 507 bits (274), Expect = 1e-142 Identities = 433/509 (85%), Gaps = 14/509 (3%) Strand=Plus/Plus Query 711 CGGCTGCTACGGCATGTCATGTCCTGGATTTGTGCAAGTTAGCAAGACTATACCAGTTGG 770 ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || | Sbjct 2505 CGGCTGCTACGACATGTCATGTCCTGGATTTGTGCAAGTTAGCAAGACTACACCAATTAG 2564 Query 771 TGCCGTTCTTCAACCATTTTCCATCTATAATGGTCGACAATATGAATTGCGTTT-AGGCT 829 |||| ||||||||||| |||| |||||| |||||| ||| |||||||||||||| || || Sbjct 2565 TGCCATTCTTCAACCAATTTCGATCTATGATGGTCCACAGTATGAATTGCGTTTGAG-CT 2623 Query 830 TGTTTCAGGATAGTGG-CACGGGAAATTGGTGGTTTGTATTTAAAGAGGAGATTATTGGA 888 ||| ||||||| | || || |||| |||||||||||| |||||| || |||| || ||| Sbjct 2624 TGTATCAGGATCG-GGTCAAGGGAGATTGGTGGTTTGCATTTAAGGATGAGAACATCGGA 2682 Query 889 TACTGGCCAGCATCATTGTTCAAGTCCTGGATGGAATCTAACAGCGCAAATTATGCATCT 948 |||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| Sbjct 2683 TACTGGCCAGCATCATTGTTGAAGTCCTGGAGGGAATCTAACAACGCAAATTATGCATCT 2742 Query 949 TGGGGAGGGCAAGTGTATAGCCCTA-TCAGAGAGAAGAG-TCCACCTATGGGAAGTGGTC 1006 |||||||| |||||||| ||||| | | | ||||||| | || |||||||||||||| Sbjct 2743 TGGGGAGGTCAAGTGTACAGCCC-AGTGACAGAGAAG-GCTCTTGTTATGGGAAGTGGTC 2800 Query 1007 ATTGGCCTAGTGAGGGCTTTCATAAAGCTGCTTTTATTAGTGGCCTCAAACTCTTCGAT- 1065 ||||||||| || ||| || | ||||| || | | | || ||| ||||| || ||||| Sbjct 2801 ATTGGCCTATTGGGGGATTAAAAAAAGCAGCCTATGTGAGCGGCATCAAAATCATCGATA 2860 Query 1066 GGTCACGGGAAAGTTTATA-ATCCAGGACGCGGGA-CAGTGAAGGTACATGAGAGCAGAC 1123 |||| |||| ||||| | |||||| | | || |||||||||||||||||||||||| Sbjct 2861 GGTCG-GGGACAGTTT-TCGATCCAGAA-GTTGGTTCAGTGAAGGTACATGAGAGCAGAC 2917 Query 1124 CAATCTGTTACAAAGCCAGATATGTTCATGATGTTGATAAACCTTGGTTAAAATCTGTTT 1183 ||| |||||||||||||| |||||||||||| | |||| | |||||||||| | |||||| Sbjct 2918 CAAACTGTTACAAAGCCATATATGTTCATGAAGATGATGAGCCTTGGTTAAGAGCTGTTT 2977 Query 1184 ACTTTGGAGGTCCTGGAGGGTGCATAGGG 1212 ||||||||||||||||||| ||||||||| Sbjct 2978 ACTTTGGAGGTCCTGGAGGATGCATAGGG 3006 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50436619191 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5