BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23370.1
Length=3117
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354433 jgi|Araly1|354433|fgenesh1_pg.C_scaffold_7001606 1417 0.0
Ahg492539 jgi|Araly1|492539|fgenesh2_kg.7__1972__AT4G23370.1 1288 0.0
Ahg492537 jgi|Araly1|492537|fgenesh2_kg.7__1970__AT4G23390.1 508 7e-143
Ahg889830 jgi|Araly1|889830|Al_scaffold_0007_1816 396 6e-109
> Ahg354433 jgi|Araly1|354433|fgenesh1_pg.C_scaffold_7001606
Length=1212
Score = 1417 bits (767), Expect = 0.0
Identities = 1058/1193 (89%), Gaps = 42/1193 (4%)
Strand=Plus/Plus
Query 1943 TCACTCTTATTTTATCCGCTCAAGCAACTAAGGAACGCCGACCAATACCATCAAAGGCAG 2002
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 44 TCACTCTTATTTTATCCGCTGAAGCAACTAAGGAACGCCGAGCAATACCATCAAAGGCAG 103
Query 2003 A-AAGAAAAGAAATGGAGAGACAACTCAAAGCTATCAACAAGCCTGCAATCAAGAGTTTG 2061
| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 104 AGAAG-AAAGAAATGGAGAGACAACTCAAAGCTATCAACAAACCTGCAATCAAGAGTTTC 162
Query 2062 AAGACTGAATATGGTGATATATTCGACTGTATCGATATTCACAAACAACGAGCATTTGAT 2121
|||||| || |||||||||||||||| |||||||| ||||||||||||| ||| ||||||
Sbjct 163 AAGACTAAACATGGTGATATATTCGATTGTATCGAAATTCACAAACAACTAGCGTTTGAT 222
Query 2122 CATCATCTACTCAAAAACCACTCTATTCAGCTAAAGCCTACAAGTGTACCTGAATGGATC 2181
|||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||
Sbjct 223 CATCATCTACTCAAAAACCACTCTGTTCAGCTAAAGCCAACAACTGTACCTGAATGGATC 282
Query 2182 AATAGAAAC-AT--TTCAGGGAGATCATTTGGTCTTCTACAAGAAGGTATAAGCTGTCCA 2238
| | ||||| || ||| ||||| | |||| |||||| |||||||||||||||||||||
Sbjct 283 ACTGGAAACAATGGTTCGGGGAG-T--TTTGATCTTCTGCAAGAAGGTATAAGCTGTCCA 339
Query 2239 GATGGAACAGTAATTGTAAAAAGGACTACAATGCAAGATCTTATGCATGCACAACGTTTG 2298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GATGGAACAGTAATTGTAAAAAGGACTACAATGCAAGATCTTATGCATGCACAACGTTTG 399
Query 2299 AAATCCATGGGATTCGACGGCCCGAGACCTTTTCTCACAGAGA-CAAACAACACTAATTT 2357
||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 400 AAATCCATGGGATTCGACGGCCCGAGACCTTTTCTCAAAGAGAGCAAT-AACACTAATTT 458
Query 2358 CAATAGAAAATTCTACGTTGCAAAAGCTAACTATGGACCAGATCTTTTTGCTGGAGTAAG 2417
||| ||||||||||| |||||| |||| |||||||||| |||| ||||| ||||||||
Sbjct 459 AAATGGAAAATTCTACTTTGCAACAGCTGACTATGGACCGGATCGTTTTGGTGGAGTAAA 518
Query 2418 AGGAAACATTAACATATGGTCACCAAAAATCTTGCAAGATCAAGTTAGTGTTGCATACAT 2477
||||||||||||| ||||| |||||| ||||||||||||||||||||| | ||||||||
Sbjct 519 AGGAAACATTAACGTATGGAAACCAAATATCTTGCAAGATCAAGTTAGTATCGCATACAT 578
Query 2478 AGCAGTTGGTGGAGGTGC-TA---AAGAAAATTTTGCCAGCATTTCAGTTGGATGGAAAG 2533
||||||| ||||||| || || |||||||||| ||||||||||||||||||||| |
Sbjct 579 AGCAGTTAGTGGAGG-GCGTATTGAAGAAAATTTGGCCAGCATTTCAGTTGGATGGGTGG 637
Query 2534 TGAATCCATCTCTATAC-CATGGTGATCATGTTCGTTTATACGCCT-CTTGGACTGTA-A 2590
|||||||||| | ||| | |||||||||||||||||||||||||| || ||||| | |
Sbjct 638 TGAATCCATCGATGTACTC-TGGTGATCATGTTCGTTTATACGCCTACT-GGACTACACA 695
Query 2591 GTTTTGAGTTATACCACAAT-ACCGGCTGCAACGACATGTCATGTCCTGGATTTGTGCAA 2649
| | | | | ||| | ||||||||| ||| |||||||||||||||||||||||||
Sbjct 696 -T---G-G--A-A--ACA-TGACCGGCTGCTACGCCATGTCATGTCCTGGATTTGTGCAA 744
Query 2650 GTTAGCAAGACTATAGCACTTGGTGCCATTATTCAACCAATTTCCATCTATAAGGGTCCA 2709
||||||||||||||| || || |||||||| ||||||||| |||||||||||| ||||||
Sbjct 745 GTTAGCAAGACTATACCAGTTAGTGCCATTCTTCAACCAAGTTCCATCTATAATGGTCCA 804
Query 2710 CAGTATGAATTGCGTTTGACCTTGTATCAGAATCAAATCAAGGGAGATTGGTGGTTTGCA 2769
|| |||||||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 805 CAATATGAATTGCGTTTGAGCTTGTATCAGGATCGTGTCAAGGGAGATTGGTGGTTTGCA 864
Query 2770 TGTAATGATGAGGACGTTGGATACTGGCCAGCATCATTGTTCAAGTCCTGGAGAGAATCT 2829
| ||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 865 TTTAAAGATGAAAACGTTGGATACTGGCCAGCATCATTGTTCAAGTCCTGGAGGGAATCT 924
Query 2830 AAC-GCCGCAAGTTATGCATCTTGGGGTGGCCAAGTGTATAGCCCAGTGACAGAGAAGAG 2888
||| || |||| | |||||| |||||| || |||||||||||||| |||||||||||||
Sbjct 925 AACAGC-GCAAATCATGCATTTTGGGGAGGTCAAGTGTATAGCCCTGTGACAGAGAAGAC 983
Query 2889 TCCACCTATGGGAAGTGGTCATTGGCCTAGTGAGGGCTTCCATAAATCTGCTTATGTTAG 2948
|||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 984 TCCACCTATGGGAAGTGGTCATTGGCCTAGTGAGGGCTTCCATAAAGCTGCTTTTATTAG 1043
Query 2949 CAACCTCCAAATCATTAATG-TTAATGGAAGAGTTTTTAATCCACAAACGGGTACAGTGA 3007
| |||||||||||| ||| ||| ||||| ||||||||||||| || ||||||||||||
Sbjct 1044 CGGCCTCCAAATCATGGATGGTTA-TGGAACAGTTTTTAATCCAGAATCGGGTACAGTGA 1102
Query 3008 AGTTACATGAGACCATG-CGAAGCTGTTACAAAGCCAGATTTGTTCATGATGCTAAGAAG 3066
|| ||||||||| || | |||| ||||||||||||||||| ||||||||| | | |||
Sbjct 1103 AGGTACATGAGAGCA-GACGAAACTGTTACAAAGCCAGATATGTTCATGAGGTTGCTAAG 1161
Query 3067 CCTTGGTTAAAA-TCT-TTTTACTATGGAGGTCCTGGAGGATGCATAGTGTAA 3117
|||||| |||| ||| |||| ||||||||||||||||||||||||| ||||
Sbjct 1162 CCTTGGA-AAAAGTCTGTTTTT-TATGGAGGTCCTGGAGGATGCATAGGGTAA 1212
> Ahg492539 jgi|Araly1|492539|fgenesh2_kg.7__1972__AT4G23370.1
Length=3012
Score = 1288 bits (697), Expect = 0.0
Identities = 954/1072 (89%), Gaps = 42/1072 (4%)
Strand=Plus/Plus
Query 1540 TGGACAGCAGATGGGTTTAACAAGACAGGTTGTTACAATACATTATGTCCTGGCTTTGTA 1599
|||| ||||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1426 TGGATAGCAGATGGATTTGAGAAGACAGGTTGTTACAATACATTATGTCCTGGCTTTGTA 1485
Query 1600 CAAGTAAGCACTGATATCCCACTAGGTTACCTTCTTCAACCAGTTTCCACTTACGGTGGC 1659
||||| ||||| ||||||||||| || |||||||||||||||||||||| ||||||||||
Sbjct 1486 CAAGTGAGCACCGATATCCCACTTGGCTACCTTCTTCAACCAGTTTCCATTTACGGTGGC 1545
Query 1660 AAACAATACGAAGTAGGCATCAACATGTATAAGGATCATATTACAGGAAATTGGTGGTTG 1719
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 AAACAATATGAAGTAGGCATCAACATGTATAAGGATCATATTACAGGAAATTGGTGGTTG 1605
Query 1720 GTGGCGTTCAATAATAATTATGTTGGATACTGGCCAAAATCATTGTTCACAGATGTTGGT 1779
|||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1606 GTGGCGTTCAATGATAATTATGTTGGATATTGGCCAAAATCATTGTTCACAGCTGTTGGT 1665
Query 1780 TTAGGCCATGGAGGAAGCTTGGCCTCATGGGGAGGAGAAGTATATAGTCCAGTGAAAGAG 1839
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1666 TTAGGCCATGGAGGAAGTTTGGCATCATGGGGAGGAGAAGTATACAGTCCAGTGAAAGAG 1725
Query 1840 AAGAGTCCAAGCATGGGAAGTGGACATTTCCCACAACAGAA-AAGTTACACGAAAGTAGC 1898
||||| ||||| ||||||||||||||||||||| | | || ||||||||||||||||||
Sbjct 1726 AAGAGCCCAAGAATGGGAAGTGGACATTTCCCA-GAGAAAAGAAGTTACACGAAAGTAGC 1784
Query 1899 CTATATGAATGATTTTGTAGTATATAATGATCTTGGATCGGAAGTCACTCTTATTTTATC 1958
|||||||||||||||||||||||||||||||| | | | | | || |
Sbjct 1785 CTATATGAATGATTTTGTAGTATATAATGATC-T---T--G--G--A-TC--------T- 1824
Query 1959 CGCTCAAGCAACTAAGGAACGCCGACCAATACCATCAAAGGCAGA-AAGAAAAGAAATGG 2017
| | ||||||||| |||||| || |||||| | |||||||||| | | ||||||||||
Sbjct 1825 -G-T--AGCAACTAAAGAACGCAGAGCAATACAAACAAAGGCAGAGATG-AAAGAAATGG 1879
Query 2018 AGAGACAACTCAAAGCTATCAACAAGCCTGCAATCAAGAGTTTGAAGACTGAATATGGTG 2077
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1880 AGAGACAACTCAAAGCTATCAACAAGCCTGCAATCAAGAGTTTCAAGACTGAACATGGTG 1939
Query 2078 ATATATTCGACTGTATCGATATTCACAAACAACGAGCATTTGATCATCATCTACTCAAAA 2137
|||||||||| |||||| | ||||||||||||| |||||||||||||| |||||| ||||
Sbjct 1940 ATATATTCGATTGTATCAAAATTCACAAACAACTAGCATTTGATCATCCTCTACTAAAAA 1999
Query 2138 ACCACTCTATTCAGCTAAAGCCTACAAGTGTACCTGAATGGATCAATAGAAACA---TTT 2194
| |||||| ||||||||||||| |||| ||||||||||||||||| | |||||| |||
Sbjct 2000 ATCACTCTGTTCAGCTAAAGCCAACAACTGTACCTGAATGGATCACTGGAAACAACATTT 2059
Query 2195 CAGGGAGATCATTTGGTCTTCTACAAGAAGGTATAAGCTGTCCAGATGGAACAGTAATTG 2254
|||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2060 CAGGGA---CATTTGATCTTCTGCAAGAAGGTATAAGCTGTCCAGATGGAACAGTAATTG 2116
Query 2255 TAAAAAGGACTACAATGCAAGATCTTATGCATGCACAACGTTTGAAATCCATGGGATTCG 2314
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2117 TAAAAAGGACAACAATGCAAGATCTTATGCATGCAAAACGTTTGAAATCCATGGGATTCA 2176
Query 2315 ACGGCCCGAGACCTTTTCTCACAGAGACAAACAACACTAATTTCAA-TAGAAAATTCTAC 2373
||||||||||||||||||||| ||||| ||| |||||||||| ||| | ||| |||||||
Sbjct 2177 ACGGCCCGAGACCTTTTCTCAAAGAGAGAAATAACACTAATT-CAAATGGAATATTCTAC 2235
Query 2374 GTTGCAAAAGCTAACTATGGACCAGATC-TTTTTGCTGGAGTAAGAGGAAACATTAACAT 2432
||||||||||| ||| |||||| ||| ||||| ||||||||| |||||||||||||||
Sbjct 2236 TTTGCAAAAGCTGACTTTGGACCGGATAGTTTTT-CTGGAGTAAAAGGAAACATTAACAT 2294
Query 2433 ATGGTCACCAAAAATCTTGCAAGATCAAGTTAGTGTTGCATACATA-GCAGTTGGTGGAG 2491
|||| |||||||||||||| ||||||||||||| |||||| |||| || ||||||||||
Sbjct 2295 ATGGAAACCAAAAATCTTGCTAGATCAAGTTAGTTTTGCATTCATAAGC-GTTGGTGGAG 2353
Query 2492 GTGC-TAAAGAAAATTTTGCCAGCATTTCAGTTGGATGGAAAGTGAATCCATCTCTATAC 2550
| || ||||||||| || ||||||||||||| ||| |||| ||||||||||| || |||
Sbjct 2354 G-GCCTAAAGAAAAATTCGCCAGCATTTCAGCTGGGTGGATGGTGAATCCATCGCTCTAC 2412
Query 2551 CATGGTGATCATGTTCGTTTATACGCCTCTTGGACTGTAAGTTTTGAGTTAT 2602
| |||||| ||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 2413 TACGGTGATTATGTTCGCTTATACGCCTCATGGACTGTAAGTTTTGATTTAT 2464
Score = 1254 bits (679), Expect = 0.0
Identities = 786/836 (94%), Gaps = 13/836 (2%)
Strand=Plus/Plus
Query 670 TCCAGTGAAAGAGAAGAGTCCAAGCAT-GGAAGTGGACATTTCCCACAAGAGGGTTTCAA 728
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 600 TCCAGTGAAAGAGAAGAGTCCAAGCATGGGAAGTGGACATTTCCCAGAAGAGGGTTTCAA 659
Query 729 GAAAGCAGCCTATGTGAGTGGTATTGAACTAATCGAAGATATTAAATTGGAAGGTTCGAT 788
|||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct 660 GAAAGCAGCCTATGTGAGTGGTATTGAAGTAGTCGAAGATACTAAATTGGAAGGTTCGAT 719
Query 789 GGGTCCACCACTTCATTCTCTAAAAACAGTTTCAAGCACCCCAAATTGTTACAAAGCCAT 848
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 720 GGGTCCACCACTTCATTCTCTAACAACATTTTCAAGCACCCCAAATTGTTACAAAGCCAT 779
Query 849 AAAGAAACCAGGTATGGGTGAACTTTGGGCTAATGCTATTTTCTTTGGAGGGCCAGGAGG 908
||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 780 AAAGAAACCAGGTATTGGTGAACTTTGGGATAACGCTATTTTCTTTGGAGGGCCAGGAGG 839
Query 909 ATCAATAGCTCTAATTATAGTTACTGAGAGTTACAGAACAAAACCATTGGAAGAGGAGGA 968
|||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 840 ATCAATAGCTCTAATTTTAGTTTCTGAGAGTTACAGAACAAAACAATTGGAAGAGGAGGA 899
Query 969 AAAC-ACGTTGGAGAGTTTACTCAACTATATCAATAAGTCTGCGATCAAGAGTTTTCGGA 1027
|||| | ||||||||| |||||||| |||||||||| |||| ||||||||||| ||||
Sbjct 900 AAACGA-GTTGGAGAGATTACTCAAAAATATCAATAAACCTGCAATCAAGAGTTTCCGGA 958
Query 1028 CTAAACATGGCGATACATTGGATTGCATAGACATTCACAAGCAGCTAGCCTTTAATCATC 1087
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 959 CTAAACATGGTGATACATTGGATTGCATCGACATTCACAAGCAACTAGCCTTTGATCATT 1018
Query 1088 CTCTACTCATAAACCATTCTATTC-----A-GCCTACGACTATACCTAAATGGACCATAA 1141
|||||||||||||||||||||||| | |||||| ||||||||||||||||||||||
Sbjct 1019 CTCTACTCATAAACCATTCTATTCAGTTGAGGCCTACTACTATACCTAAATGGACCATAA 1078
Query 1142 ATAATAACAACAATTCTGAGAAAGGTGGTTCCTTCCCGTTTAGACGAGATGGTATAAGTT 1201
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1079 GTAATAACAACAATTCTGAGAAAGGTGGTTCCCTCCCGTTTAGACAAGATGGTATAAGTT 1138
Query 1202 GTCCACTTGGAACCGTGATTGTTAAGAGGACCACACTGGAAGATCTTATACAAGCTCAGA 1261
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1139 GTCCACTTGGAACCGTGATTGTTAAGAGGACCACACTAGAAGATCTTATACAAGCTCGGA 1198
Query 1262 GTTTGAAATCCATGGGCTTCAAATCTTCAAGATATGTTTCTTCAAA-GAGCAAGAACATT 1320
|||||||||||||||| ||||||||||||||||||||||||||||| | | || ||||||
Sbjct 1199 GTTTGAAATCCATGGGGTTCAAATCTTCAAGATATGTTTCTTCAAACG-GAAAAAACATT 1257
Query 1321 GATCTATCTGGTTATCATTTTGCTGTGGCTCAGTACAAAAAATTTCATTATGGAGCAAAG 1380
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1258 GATCTATCTGGTTATCATTTTGCTGTGGCTCAATACAAAAAATTTCATTATGGAGCAAAG 1317
Query 1381 GGAAATCTTAACATCTGGGAACCCGAAGTTTCACCTAATCAATTCAGTCTTGCAAGTATC 1440
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1318 GGAAACCTTAATATCTGGGAACCGGAAGTTTCACCTAATCAATTCAGTCTTGCAAGTATC 1377
Query 1441 ACTATCT-CTGCAGGATCAAATGAACAGTTTCAAGGCATTAGAGCTGGATGGATAG 1495
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ACTAT-TGCTGCAGGATCAAATGAACAGTTTCAAGGCATTAGAGCTGGATGGATAG 1432
Score = 484 bits (262), Expect = 1e-135
Identities = 426/506 (84%), Gaps = 8/506 (2%)
Strand=Plus/Plus
Query 2611 ACCGGCTGCAACGACATGTCATGTCCTGGATTTGTGCAAGTTAGCAAGACTATAGCACTT 2670
||||||||| |||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 2503 ACCGGCTGCTACGACATGTCATGTCCTGGATTTGTGCAAGTTAGCAAGACTACACCAATT 2562
Query 2671 GGTGCCATTATTCAACCAATTTCCATCTATAAGGGTCCACAGTATGAATTGCGTTTGACC 2730
|||||||| ||||||||||||| |||||| | ||||||||||||||||||||||||| |
Sbjct 2563 AGTGCCATTCTTCAACCAATTTCGATCTATGATGGTCCACAGTATGAATTGCGTTTGAGC 2622
Query 2731 TTGTATCAGAATCAAATCAAGGGAGATTGGTGGTTTGCATGTAATGATGAGGACGTTGGA 2790
||||||||| ||| |||||||||||||||||||||||| ||| |||||| || | |||
Sbjct 2623 TTGTATCAGGATCGGGTCAAGGGAGATTGGTGGTTTGCATTTAAGGATGAGAACATCGGA 2682
Query 2791 TACTGGCCAGCATCATTGTTCAAGTCCTGGAGAGAATCTAACGCCGCAAGTTATGCATCT 2850
|||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||
Sbjct 2683 TACTGGCCAGCATCATTGTTGAAGTCCTGGAGGGAATCTAACAACGCAAATTATGCATCT 2742
Query 2851 TGGGGTGGCCAAGTGTATAGCCCAGTGACAGAGAAGAG-TCCACCTATGGGAAGTGGTCA 2909
||||| || |||||||| |||||||||||||||||| | || |||||||||||||||
Sbjct 2743 TGGGGAGGTCAAGTGTACAGCCCAGTGACAGAGAAG-GCTCTTGTTATGGGAAGTGGTCA 2801
Query 2910 TTGGCCTAGTGAGGGCTTCCATAAATCTGCTTATGTTAGCAACCTCCAAATCATTAAT-G 2968
|||||||| || ||| || | ||| | || ||||| ||| | || ||||||| || |
Sbjct 2802 TTGGCCTATTGGGGGATTAAAAAAAGCAGCCTATGTGAGCGGCATCAAAATCATCGATAG 2861
Query 2969 TTAATGGAAGAGTTTTTAATCCACAAACGGGTACAGTGAAGTTACATGAGACCATG-CGA 3027
| ||| |||||| ||||| || ||| |||||||| ||||||||| || | | |
Sbjct 2862 GTCGGGGAC-AGTTTTCGATCCAGAAGTTGGTTCAGTGAAGGTACATGAGAGCA-GACCA 2919
Query 3028 AGCTGTTACAAAGCCAGATTTGTTCATGATGCTAA-GAAGCCTTGGTTAAAATCTTTTTA 3086
| |||||||||||||| || ||||||||| | | | || ||||||||||| | || ||||
Sbjct 2920 AACTGTTACAAAGCCATATATGTTCATGAAGATGATGA-GCCTTGGTTAAGAGCTGTTTA 2978
Query 3087 CTATGGAGGTCCTGGAGGATGCATAG 3112
|| |||||||||||||||||||||||
Sbjct 2979 CTTTGGAGGTCCTGGAGGATGCATAG 3004
Score = 394 bits (213), Expect = 2e-108
Identities = 245/260 (94%), Gaps = 3/260 (1%)
Strand=Plus/Plus
Query 405 TTTGCGGTTGGCTCAGTACAAATATTCTCATTATGGAGC-AAGAGGAAACCTTAATCTTT 463
||||| ||| |||||||||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct 247 TTTGCTGTT-GCTCAGTACAAAAATTCTCATTATGGAGCAAAG-GGAAACCTTAATCTTT 304
Query 464 GGGAACCAGAAGTTTCACCTACTCAATTCAGTCTTGCAAGTATGCTTATCTCTAGCGGCT 523
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 305 GGGAACCAGAAGTTTCACCTAATCAATTCAGTCTTGCAAGTATGCTTATCTCTAGAGGCT 364
Query 524 TAAATGAACAGTTTCAAGGCATTAGAGCTGGATGGATAGTGTACCAATGGTTAAACCGGA 583
||||||| ||||||||||| ||||||||||||||||||||||| |||||| | |||||||
Sbjct 365 TAAATGAGCAGTTTCAAGGGATTAGAGCTGGATGGATAGTGTATCAATGGCTGAACCGGA 424
Query 584 ATCACACTCGCTTATACACCTACTGGACTACGGATGGATTTAAGAAGACAGGATGCTATA 643
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 425 ATCACACTCGCTTATATACCTACTGGACTACGGATGGATTTAAGAAGACAGGTTGCTACA 484
Query 644 ATACATTATGTCCTGGCTTT 663
||||||||||||||||||||
Sbjct 485 ATACATTATGTCCTGGCTTT 504
Score = 368 bits (199), Expect = 1e-100
Identities = 280/317 (88%), Gaps = 14/317 (4%)
Strand=Plus/Plus
Query 1293 ATATGTTTCTTCAAAGAGCAAGAACATTGATCT-ATCTGGTTATCATTTTGCTGTGGCTC 1351
|||||||||||| |||||||||||||||||||| | |||||| |||||||||||| ||||
Sbjct 201 ATATGTTTCTTCGAAGAGCAAGAACATTGATCTGA-CTGGTTTTCATTTTGCTGTTGCTC 259
Query 1352 AGTACAAAAAATT-TCATTATGGAGCAAAGGGAAATCTTAA-CATCTGGGAACCCGAAGT 1409
||||| ||||||| ||||||||||||||||||||| ||||| | | |||||||| |||||
Sbjct 260 AGTAC-AAAAATTCTCATTATGGAGCAAAGGGAAACCTTAATC-TTTGGGAACCAGAAGT 317
Query 1410 TTCACCTAATCAATTCAGTCTTGCAAGTATCACT-ATCTCT-GCAGGATCAAATGAACAG 1467
|||||||||||||||||||||||||||||| || |||||| | ||| | |||||| |||
Sbjct 318 TTCACCTAATCAATTCAGTCTTGCAAGTATG-CTTATCTCTAG-AGGCTTAAATGAGCAG 375
Query 1468 TTTCAAGGCATTAGAGCTGGATGGATAGTGTACCAATGGCTAAACAAGAATCACAGC-CG 1526
|||||||| ||||||||||||||||||||||| |||||||| ||| |||||||| | ||
Sbjct 376 TTTCAAGGGATTAGAGCTGGATGGATAGTGTATCAATGGCTGAACCGGAATCACA-CTCG 434
Query 1527 CTTATACACATATTGGAC-AGCAGATGGGTTTAACAAGACAGGTTGTTACAATACATTAT 1585
|||||| || || ||||| | | ||||| ||||| ||||||||||| |||||||||||||
Sbjct 435 CTTATATACCTACTGGACTA-CGGATGGATTTAAGAAGACAGGTTGCTACAATACATTAT 493
Query 1586 GTCCTGGCTTTGTACAA 1602
||||||||||| |||||
Sbjct 494 GTCCTGGCTTTATACAA 510
Score = 174 bits (94), Expect = 3e-42
Identities = 142/163 (87%), Gaps = 11/163 (7%)
Strand=Plus/Plus
Query 405 TTTGCGGTTGGCTCAGTAC-AAATATTCTCATTATGGAGC-AAGAGGAAACCTTAATCTT 462
||||| | ||||||| ||| ||| ||| |||||||||||| ||| |||||||||||| |
Sbjct 1276 TTTGCTG-TGGCTCAATACAAAAAATT-TCATTATGGAGCAAAG-GGAAACCTTAATATC 1332
Query 463 TGGGAACCAGAAGTTTCACCTACTCAATTCAGTCTTGCAAGTATGC-TTATCT-CTAGC- 519
|||||||| ||||||||||||| ||||||||||||||||||||| | ||| | || ||
Sbjct 1333 TGGGAACCGGAAGTTTCACCTAATCAATTCAGTCTTGCAAGTAT-CACTAT-TGCT-GCA 1389
Query 520 GGCTTAAATGAACAGTTTCAAGGCATTAGAGCTGGATGGATAG 562
|| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1390 GGATCAAATGAACAGTTTCAAGGCATTAGAGCTGGATGGATAG 1432
Score = 95.3 bits (51), Expect = 2e-18
Identities = 81/95 (85%), Gaps = 3/95 (3%)
Strand=Plus/Plus
Query 1826 GTCCAGTGAAAGAGAAGAGTCCAAGCATGGGAAGTGGACATTTCCCACAACAGAAAAGTT 1885
||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 599 GTCCAGTGAAAGAGAAGAGTCCAAGCATGGGAAGTGGACATTTCCCAGAAGAGG---GTT 655
Query 1886 ACACGAAAGTAGCCTATATGAATGATTTTGTAGTA 1920
|| ||||| ||||||| ||| || | ||| ||||
Sbjct 656 TCAAGAAAGCAGCCTATGTGAGTGGTATTGAAGTA 690
> Ahg492537 jgi|Araly1|492537|fgenesh2_kg.7__1970__AT4G23390.1
Length=1255
Score = 508 bits (275), Expect = 7e-143
Identities = 794/1036 (77%), Gaps = 70/1036 (7%)
Strand=Plus/Plus
Query 911 CAATAGCTCTAATTATAGTTACTGAGAGTTACAGAA-CAAAACCATT-GGAAGAGGAGGA 968
|||| ||||| ||| ||||| |||||| ||| || || || || ||| ||||||||
Sbjct 67 CAATGGCTCTCATTTTAGTTGGGGAGAGTCACA-AATCAGTTCC-TTCGGATGAGGAGGA 124
Query 969 A-AACACGTTGGAG-AGTTTACTCAACTATATCAATAAGTCTGCGA-TCAAGAGTTTTCG 1025
| || | | ||||| || |||||||||||| ||||||| |||| | |||| ||||| |
Sbjct 125 AGAAGA-GATGGAGAAG-TTACTCAACTATCTCAATAAACCTGC-AGTCAAAAGTTTCCA 181
Query 1026 GACTAAACATGGCGATACATTGGATTGCATAGACATTCACAAGCAGCTAGCCTTTAATCA 1085
||| ||| ||| ||| |||||||||||| |||||||| || ||| |||| ||| ||||
Sbjct 182 AACTGAACCTGGTTATATATTGGATTGCATCGACATTCAAAAACAGTTAGCTTTTGATCA 241
Query 1086 TCCTCTACTCATA-AACCATTC---T-A-TT-CAGCCTACGACTATACCTAAATGGACCA 1138
|||| |||||| | |||||||| | | || |||| || | ||||||||||||||||
Sbjct 242 TCCTTTACTCA-AGAACCATTCTATTAAGTTGAAGCCCACAATTATACCTAAATGGACC- 299
Query 1139 TAAATAATAACAACAATTCTGAGAAAGGTGGTTCCTTCCCGTTTAGACGAGATGGTATAA 1198
||| ||||||||| |||| | ||| | |||| || || ||| ||| |||||| ||||
Sbjct 300 -AAA-GATAACAACACTTCTCATAAATCTAGTTCATTGCCATTTCGACAAGATGGCATAA 357
Query 1199 GTTGTCCACTTGGAACCGTGATTGTTAAGAGGACCACACTGGAAGATCTTATACAAGCTC 1258
|||||||| |||| || || ||||| || |||| | ||| |||||||||||||||||||
Sbjct 358 GTTGTCCAGTTGGGACAGTCATTGTAAAAAGGATTATACTTGAAGATCTTATACAAGCTC 417
Query 1259 AGA-GTTTGAAATCCATGGGCTTCAAATCTTCAAGATATGTTTCTTCAAA-GAGCAAGAA 1316
| | ||||||||||| | || ||||| | | || || | |||||||||| || ||||||
Sbjct 418 A-ACGTTTGAAATCCTTAGGATTCAACTATCCAGGACAAATTTCTTCAAAGGA-CAAGAA 475
Query 1317 CATTGATCTATCTGGTTATCATTTTGCTGTGGCTCAG-TACAAAAAATT-TCATTATGGA 1374
|||||| || | ||| |||||||||| | || ||| ||| ||| || ||||||
Sbjct 476 AATTGATTTAACGGGTCATCATTTTGC-CACAATTAGTTAC-AAAGATTACCACTATGGA 533
Query 1375 GCAAAGGGAAATC-TTAACATCTGGGAACCCGAA-GTTTCACCTAATCAATTCAGTCTTG 1432
||||| ||||| | ||||| | | ||||||| || || |||||| |||| || |||||||
Sbjct 534 GCAAAAGGAAA-CATTAACGTAT-GGAACCCAAATGTCTCACCTGATCAGTTTAGTCTTG 591
Query 1433 CAAG-TATCACTATCTCTGCAGGATCAAATGAACAGTTTCAAGGCATTAGAGCTGGATGG 1491
| | ||| || | ||| |||| | || ||| ||||||| ||||| |||||||||
Sbjct 592 C-GGCTATGAC--TGTCT-CAGG--C-AACGAAGGGTTTCAAAGCATTTCTGCTGGATGG 644
Query 1492 ATAGTGTA-CCAATGGCTA-A--ACAAGAATCACAGCCGCTTATACACATATTGGACAGC 1547
|| ||||| || | ||||| | |||| ||||| || ||||||| ||| || ||||| ||
Sbjct 645 ATTGTGTATCC-AGGGCTATATCACAATAATCAAAGTCGCTTATTCACTTACTGGACTGC 703
Query 1548 AGATGGGTTTAACAAGACAGGTTGTTACAATACATTATGTCCTGGCTTTGTACAAGTAAG 1607
||||| ||| ||||| ||| ||||||||| |||||||||| |||||||| || ||
Sbjct 704 GGATGGAAATAATAAGACTCATTGCTACAATACACTATGTCCTGGGTTTGTACACGTGAG 763
Query 1608 CACTGA-TATCCCACTAGGTTA-CCTTCTTCAACCAGTTTCCACTTACGGTGG-CAAACA 1664
||| | ||| || | || | ||| | ||||||||||||| ||| | ||| | ||||
Sbjct 764 CACCAAGTAT-GCAATTGG-AATGCTTGTCCAACCAGTTTCCATTTATGATGGTC-AACA 820
Query 1665 ATA-CGAAGTAGGCA-TCAACATGTATAAGGATCATATTACAGGAAATTGGTGGTTGGTG 1722
||| | || || | | ||| ||| ||| |||||||| |||||||| | |||||||| ||
Sbjct 821 ATATC-AACTA-GAAGTCAGCATATATCAGGATCATGTTACAGGAGACTGGTGGTTTGT- 877
Query 1723 GCGTTCAATAAT-AATTATGTTGGATACTGGCCAAAATCATTGTTCACAGATGTTGGTTT 1781
|| | |||||| | | ||||||| ||||||||||||||||||| | | |||||
Sbjct 878 GC--TAAATAATGAGCCA-ATTGGATATTGGCCAAAATCATTGTTCAAACCTCAAGGTTT 934
Query 1782 AGGC-CATGGAG-GAAGCT-TGGCCTCATGGGGAGGAGAAGTATATAGTCCAGTGAAAGA 1838
| || |||||| | || | || | |||||||||||||| || ||| ||||||||||
Sbjct 935 A-GCTGATGGAGCG-AG-TGCGGTGTTTTGGGGAGGAGAAGTTTACAGTTCAGTGAAAGA 991
Query 1839 GAAGAGTCCAAGCATGGGAAGTGGACATTTCCCACAACAGAAAAGTTACACGAAAGTAGC 1898
|||||||||||||||||||||||||||||||||||| || |||||| ||||| |||
Sbjct 992 AAAGAGTCCAAGCATGGGAAGTGGACATTTCCCACAAGAGG---GTTACAAGAAAGCAGC 1048
Query 1899 CTATATGAATGATTTT 1914
|||| |||||| ||||
Sbjct 1049 CTATGTGAATGGTTTT 1064
Score = 130 bits (70), Expect = 7e-29
Identities = 85/92 (92%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 672 CAGTGAAAGAGAAGAGTCCAAGCAT-GGAAGTGGACATTTCCCACAAGAGGGTTTCAAGA 730
|||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 982 CAGTGAAAGAAAAGAGTCCAAGCATGGGAAGTGGACATTTCCCACAAGAGGGTTACAAGA 1041
Query 731 AAGCAGCCTATGTGAGTGGTATTGAACTAATC 762
||||||||||||||| |||| || || |||||
Sbjct 1042 AAGCAGCCTATGTGAATGGTTTTAAAATAATC 1073
> Ahg889830 jgi|Araly1|889830|Al_scaffold_0007_1816
Length=1209
Score = 396 bits (214), Expect = 6e-109
Identities = 879/1183 (74%), Gaps = 113/1183 (10%)
Strand=Plus/Plus
Query 1979 GCCGACCAATACCATCAAAGGCAGAA-AGAA-AA-GAAATGGAGAGACAACTCAAAGCTA 2035
||||| | |||||||| || |||| |||| || ||||||||||| ||||| |||||||
Sbjct 83 GCCGAGCGATACCATC---GGAAGAAGAGAAGAACGAAATGGAGAGGCAACTTAAAGCTA 139
Query 2036 TCAACAAGCCTGCAATCAAGAGTTTGAAGACTGAATATGGTGATATATTCGACTGTATCG 2095
||||||| ||| ||||||||||||| ||||||||| | ||||| |||||||| |||||||
Sbjct 140 TCAACAAACCTCCAATCAAGAGTTTTAAGACTGAACAAGGTGAAATATTCGATTGTATCG 199
Query 2096 ATATTCACAAACAACGAGCATTTGATCATCATCTACTCAAAAACCACTCTATTCAGCTAA 2155
| |||||||| |||| ||| |||||||||||||| || | ||||||||||||||||||||
Sbjct 200 ACATTCACAAGCAACTAGCCTTTGATCATCATCTGCTGAGAAACCACTCTATTCAGCTAA 259
Query 2156 AGCCTACAAGTGTACCTGAATGGATCA-ATAG--A-AAC-ATT-TC-AGGGA--GATCAT 2206
|||| |||||||||||| ||||||||| || | | ||| ||| | | | | || |
Sbjct 260 AGCCAACAAGTGTACCTAAATGGATCACAT-GCCACAACAATTCACAAAAAATTGGTCCT 318
Query 2207 TTGG-TCTTCTA-C-AAGAAGGTATAAGCTGTCCAGATGGAACAGTAATTGTAAAAAGGA 2263
|||| |||| | | || | || ||||| |||||| |||||||||||||||| |||||||
Sbjct 319 TTGGAGCTTC-AGCTAA-AGGGAATAAGTTGTCCACATGGAACAGTAATTGTTAAAAGGA 376
Query 2264 CTACAATGCAAGATCTTATGCA-TGCACAACGTTTGAAATCCATGGGATTCGACGGCCCG 2322
||||||| ||||||||||| | | |||||| |||||||||||| ||||| | |||
Sbjct 377 CTACAATCCAAGATCTTATATACT-CACAACATTTGAAATCCATTGGATTTAATATCCCT 435
Query 2323 AGACCTTTTCTCACAGAGAC--AAACAACACTAATTTCAATAGAAAATTCTACGTTGCAA 2380
||| | | || | |||||| |||||||| | |||| | | | | | || | ||||||
Sbjct 436 AGA-CATGTC-CTTAGAGACGGAAACAACATTGATTTGACT-GGACA-TC-ATTTTGCAA 490
Query 2381 AAGCTAACTATGGACCA-GATC-TTTTTGCTGGAGT-AAGAGGAAACATTAACATATGGT 2437
|| ||||| || | || | |||||||||| | ||||||||||||| | |||
Sbjct 491 CGGCCGACTAT-GAATATGA-CAACATTGCTGGAGTCCA-AGGAAACATTAACCTCTGG- 546
Query 2438 CA-CCAAAAATCTTGCAAGATCAAGTTAGTGTTGCATA-CATAGCAG-TTGGTGGAGGTG 2494
| ||| || | | || |||||||||||| ||||| | ||| || | ||| || |||
Sbjct 547 GATCCACAAGTGTCACATGATCAAGTTAGTCTTGCA-ACCATGGC-GATTGCAGGCGGTC 604
Query 2495 C--TAA-AGAA-AATTTTGCCAGCATTTCAGTTGGATGGAAAGTGAATCCA-TCTCTATA 2549
| ||| ||| | | | |||||||||| |||||||||| |||||| || | | | ||
Sbjct 605 CAATAATCGAAGAGCTCT-CCAGCATTTCCGTTGGATGGATGGTGAATTCATTGT-TGTA 662
Query 2550 CCATGGTGATCATGTTCGTTTATACGCCT-CTTGGACTGTAAGTTTTGAGTTATACCACA 2608
|| | ||||| ||| |||||| ||| | ||||||| || || | |||| | |
Sbjct 663 -CA-AG-GATCACATTCACTTATACACCTAC-TGGACTG-CAG--ATG-GATATA--ATA 712
Query 2609 ATACCGGCTGCAACGACATGTCATGTCCTGGATTTGTGCAAGTTAGCAAGACTATAGCAC 2668
| || |||||| ||||||| |||||||||||| |||||||| ||||||| ||| |||
Sbjct 713 AGACAGGCTGCTACGACATAAGATGTCCTGGATTCGTGCAAGTCAGCAAGAGAATACCAC 772
Query 2669 TTGGTG-CCATTATTCAACCAATTTCCATCTATAAGGGTCCACAGTATGAATTGCG-TTT 2726
|||||| || || |||| ||| |||| || ||||| ||| |||| | ||| || | ||
Sbjct 773 TTGGTGTCC-TTCTTCAGCCAGTTTCAATTTATAATGGTACACAAAAAGAAATG-GACTT 830
Query 2727 GACCTTGTATCA-G-AATCAAATCAAGGGAGATTGGTGGTTTGCATGTAATGATGAGGAC 2784
| |||| |||| | ||| | || ||| || | | | | | | ||| |
Sbjct 831 AAGCTTGCATCAGGTAATTACCTC----CAGA---GT-CTCT--A-G--A-G-TGA--AT 873
Query 2785 GTTGGATACTGGCCAGCA-TCATTGTTCA-AGTCCTGGA-G-AGAATCTAACGCCGCAAG 2840
||||| || |||||| || |||||||||| || ||| | | | | ||| | || ||
Sbjct 874 GTTGGGTATTGGCCA-CAGTCATTGTTCATAG-CCT-CAGGCTTAGT-TAAAGGAGC-AG 928
Query 2841 -T-TATGCATCTTGGGGTGGCCAAGTGTATAGCCCAGTGACAGAGAAGAGTCCACCTATG 2898
| | |||||||||||| || |||||||| || ||| ||| || ||||||||| ||||
Sbjct 929 ATCT-TGCATCTTGGGGAGGTCAAGTGTACAGTCCAACGACTGAAAAGAGTCCAATTATG 987
Query 2899 GGAAGTGGTCATTGGCCT-AGTGAGGGCTTC-CATAAATCTG-CTTATGTTAGCAACCTC 2955
|| ||||| |||| ||| || || |||||| | ||| | | ||| ||| | ||| ||
Sbjct 988 GGCAGTGGGCATTTTCCTAAG-GAAGGCTTCGGA-AAAGCAGCCTT-TGTAAACAATATC 1044
Query 2956 CAAATCATTAATGTTAATGGAAG-AGTTTTTAATCCACAAACGGGTACA--GTGAAGTTA 3012
|| ||| | |||| ||| || || || ||| | |||||||| |||| | ||| |
Sbjct 1045 CATATCCTCAATGGTAA-GGGAGAAGCTTTGATTCCACAAA--TCTACACTATAAAGACA 1101
Query 3013 CATGAGACCA-TGCGAAGCTGTTACAAAGCC-AGATTTGTTCATGATGCT-AAGAAGCCT 3069
||||||| || | | || ||||| |||||| || | ||||||||||| | | ||| |||
Sbjct 1102 CATGAGAGCACT-CCAAATTGTTATAAAGCCAAG-TATGTTCATGATGATGATGAA-CCT 1158
Query 3070 TGGTTAAAATCTTTTTACTATGGAGGTCCTGGAGGATGCATAG 3112
||| ||| | || ||||||||||||||||||||||||||||||
Sbjct 1159 TGGATAAGAGCTGTTTACTATGGAGGTCCTGGAGGATGCATAG 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117736947295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5