BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23380.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889830 jgi|Araly1|889830|Al_scaffold_0007_1816 1692 0.0
Ahg492539 jgi|Araly1|492539|fgenesh2_kg.7__1972__AT4G23370.1 150 2e-35
> Ahg889830 jgi|Araly1|889830|Al_scaffold_0007_1816
Length=1209
Score = 1692 bits (916), Expect = 0.0
Identities = 1112/1206 (92%), Gaps = 15/1206 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCCTCCAATAAAAACCTTGTGTTACG-AATTCTGTTAACAATTTCTCTTGTATT 59
||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||| ||
Sbjct 1 ATGGATTCCTCCAATAACCACCTTGTGTTA-GTGATTCTGTTAACAATTGCTCTTGTTTT 59
Query 60 AGTCTCTG-AAGCAGCTCATGAAAGCCGGGGGATTCCATCGGAAGAAGAGAAGAAAGAAA 118
|| || ||||||||||| |||||| | ||| |||||||||||||||||||| ||||
Sbjct 60 AG-GGGTGAAAGCAGCTCATCTAAGCCGAGCGATACCATCGGAAGAAGAGAAGAACGAAA 118
Query 119 TGGAGAGGCAACTCAAAGCTATCAACAAACCTGCTATCAAAAGTTTCAAAACTGAACAAG 178
||||||||||||| |||||||||||||||||| | ||||| ||||| || ||||||||||
Sbjct 119 TGGAGAGGCAACTTAAAGCTATCAACAAACCTCCAATCAAGAGTTTTAAGACTGAACAAG 178
Query 179 TTGAAATATTCGATTGTATAGACATTCACAAGCAACTAGCCTTTGATCACCATCTGCTAA 238
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 179 GTGAAATATTCGATTGTATCGACATTCACAAGCAACTAGCCTTTGATCATCATCTGCTGA 238
Query 239 GAAACCACTCTGTTAAGCTAAAGCCAACAAGTGTACCTAAATGGCCGATCACATACGACA 298
||||||||||| || ||||||||||||||||||||||||||| | |||||||| | |||
Sbjct 239 GAAACCACTCTATTCAGCTAAAGCCAACAAGTGTACCTAAAT-G--GATCACATGCCACA 295
Query 299 ACAAAGGACAAAAAGTTGGTCCTATGCAGCTTCAGCTAAAGGGAATAAGTTGTCCACATG 358
|||| ||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 296 ACAATTCACAAAAAATTGGTCCTTTGGAGCTTCAGCTAAAGGGAATAAGTTGTCCACATG 355
Query 359 GGACAGTAATTGTTAAAAGGACTACAATCCAAGATCTTATAAACTCGCAACATTTGAAAT 418
| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 356 GAACAGTAATTGTTAAAAGGACTACAATCCAAGATCTTATATACTCACAACATTTGAAAT 415
Query 419 CCATTGG-TTTCAATATCCCTAGACATGTCCTTAGCCAGGGAAGTAACATTGATTTAAGT 477
||||||| ||| ||||||||||||||||||||||| | |||| ||||||||||| | |
Sbjct 416 CCATTGGATTT-AATATCCCTAGACATGTCCTTAGAGACGGAAACAACATTGATTTGACT 474
Query 478 GGACATCATTTTGCAACAGCCGACTATGACTATGACAACGTTGCTGGAGTAAC-AGGAAA 536
||||||||||||||||| ||||||||||| ||||||||| |||||||||| | ||||||
Sbjct 475 GGACATCATTTTGCAACGGCCGACTATGAATATGACAACATTGCTGGAGT-CCAAGGAAA 533
Query 537 CATTAACCTCTGGGATCCACAAGTGTCACATGATCAAGTTAGTCTTGCAACCATGGCGAT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CATTAACCTCTGGGATCCACAAGTGTCACATGATCAAGTTAGTCTTGCAACCATGGCGAT 593
Query 597 TGCAGGCGGTCCTAA-AATAGAACAGCTCGCCAGCATTTCAGTTGGATGGATGGTGAATC 655
|||||||||||| || ||| ||| ||||| |||||||||| ||||||||||||||||||
Sbjct 594 TGCAGGCGGTCC-AATAATCGAAGAGCTCTCCAGCATTTCCGTTGGATGGATGGTGAATT 652
Query 656 CGTTGTTATACCAAG-ATCACATTCACTTATACACTTACTGGACTGCAGATGGATATAAT 714
| ||||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 653 CATTGTTGTAC-AAGGATCACATTCACTTATACACCTACTGGACTGCAGATGGATATAAT 711
Query 715 AAGACAGGCTGCTACGACATAAGATGTCCTGGATTCGTGCAAGTCAGCAAGAGGATACCA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 712 AAGACAGGCTGCTACGACATAAGATGTCCTGGATTCGTGCAAGTCAGCAAGAGAATACCA 771
Query 775 CTTGGTGTCCTTCTTCAACCAATTTCTGTTTATAATGGCACACAAAAAGAAATGGACTTA 834
||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||
Sbjct 772 CTTGGTGTCCTTCTTCAGCCAGTTTCAATTTATAATGGTACACAAAAAGAAATGGACTTA 831
Query 835 AGCTTGCATCAGGTAGTTACCTCCAGAGTCTCTGGTGTGAATGTTGGGTATTGGCCACAG 894
||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 832 AGCTTGCATCAGGTAATTACCTCCAGAGTCTCTAGAGTGAATGTTGGGTATTGGCCACAG 891
Query 895 TCATTGTTCATAGCGTCAGGCTTAGTGAAAGGAGCAGATCTTGCATCTTGGGGAGGTCAA 954
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 892 TCATTGTTCATAGCCTCAGGCTTAGTTAAAGGAGCAGATCTTGCATCTTGGGGAGGTCAA 951
Query 955 GTGTACAGTCCAAAGACAGAAAAGAGTCCAATCATGGGCAGTGGGCATTTTCCTAAGGAA 1014
||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 952 GTGTACAGTCCAACGACTGAAAAGAGTCCAATTATGGGCAGTGGGCATTTTCCTAAGGAA 1011
Query 1015 GGTTTCGGAAAAGCAGCCTTTGTAAACAATATACATATCATGAATGGTAAGGGAGAAGCT 1074
|| ||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 1012 GGCTTCGGAAAAGCAGCCTTTGTAAACAATATCCATATCCTCAATGGTAAGGGAGAAGCT 1071
Query 1075 TTGATTCCACAAATCTACACTATAGAGACACATGAGAGCAGTCCAAATTGTTATAAAGCC 1134
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1072 TTGATTCCACAAATCTACACTATAAAGACACATGAGAGCACTCCAAATTGTTATAAAGCC 1131
Query 1135 AAGTTTGTTCATGATGAAGATGAACCTTGGATAAGAGCTGTTTACTTTGGAGGTCCTGGA 1194
|||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1132 AAGTATGTTCATGATGATGATGAACCTTGGATAAGAGCTGTTTACTATGGAGGTCCTGGA 1191
Query 1195 GGATGC 1200
||||||
Sbjct 1192 GGATGC 1197
> Ahg492539 jgi|Araly1|492539|fgenesh2_kg.7__1972__AT4G23370.1
Length=3012
Score = 150 bits (81), Expect = 2e-35
Identities = 301/405 (74%), Gaps = 24/405 (6%)
Strand=Plus/Plus
Query 99 GGAAGAAGA-GAAGAAAGAAATGGAGAGGCAACTCAAAGCTATCAACAAACCTGCTATCA 157
|||||| || ||| || || ||||||| ||||||| |||||| |||||||| ||||
Sbjct 888 GGAAGAGGAGGAA-AACGAGTTGGAGAGATTACTCAAAAATATCAATAAACCTGCAATCA 946
Query 158 AAAGTTTCAAAACTGAACAAGTTGAAATATTCGATTGTATAGACATTCACAAGCAACTAG 217
| |||||| ||| |||| | ||| | ||| ||||| || |||||||||||||||||||
Sbjct 947 AGAGTTTCCGGACTAAACATGGTGATACATTGGATTGCATCGACATTCACAAGCAACTAG 1006
Query 218 CCTTTGATCAC-CATCTGCTAAGAAACCACTCTGTTAAGCTAAAGCCAACAAGTGTACCT 276
|||||||||| | ||| || | |||||| ||| || || | | ||| || | | |||||
Sbjct 1007 CCTTTGATCATTC-TCTACTCATAAACCATTCTATTCAGTTGAGGCCTACTACTATACCT 1065
Query 277 AAATGG-CCGATCACATACGA-CAACAAAGGACAAAAAGTTGGT-CCTATGCAGCTTCAG 333
|||||| || || | || | |||||| | |||| |||| || | | | || ||
Sbjct 1066 AAATGGACC-ATAAG-TAATAACAACAATTCTGAGAAAGGTGGTTCCC-TCCCGTTT-AG 1121
Query 334 -CTAA-AGGGAATAAGTTGTCCACATGGGACAGTAATTGTTAAAAGGACTACAATCCAAG 391
| || | || ||||||||||||| ||| || || |||||||| ||||| ||| | |||
Sbjct 1122 AC-AAGATGGTATAAGTTGTCCACTTGGAACCGTGATTGTTAAGAGGACCACACTAGAAG 1180
Query 392 ATCTTATA-AA-CTCGCAACATTTGAAATCCATTGGTTTCAATATCC-CTAGACATGTC- 447
|||||||| || |||| | |||||||||||| || ||||| ||| | ||| ||||
Sbjct 1181 ATCTTATACAAGCTCGGAG--TTTGAAATCCATGGGGTTCAA-ATCTTCAAGATATGTTT 1237
Query 448 CTT-AGCCAGGGAAGTAACATTGATTTAAGTGGACATCATTTTGC 491
||| | | || || ||||||||| || ||| ||||||||||
Sbjct 1238 CTTCAAAC-GGAAAA-AACATTGATCTATCTGGTTATCATTTTGC 1280
Score = 141 bits (76), Expect = 1e-32
Identities = 212/275 (77%), Gaps = 20/275 (7%)
Strand=Plus/Plus
Query 936 TGCATCTTGGGGAGGTCAAGTGTACAGTCCAAAGACAGAAAAGAG-TCCAATCATGGGCA 994
||||||||||||||||||||||||||| ||| |||||| ||| | || | ||||| |
Sbjct 2736 TGCATCTTGGGGAGGTCAAGTGTACAGCCCAGTGACAGAGAAG-GCTCTTGTTATGGGAA 2794
Query 995 GTGGGCATTTTCCTA-AGGAAGGTTTCGGAAAAGCAGCCTTTGTAAACAATATAC-ATAT 1052
|||| |||| |||| || || || ||||||||||| ||| | | || | | ||
Sbjct 2795 GTGGTCATTGGCCTATTGG-GGGATTAAAAAAAGCAGCCTATGTGAGCGGCAT-CAAAAT 2852
Query 1053 CAT-GAAT-GGTAAGGGAGA-AGCTTT-GATTCCACAA-AT-CTACACTATAGAGACACA 1106
||| | || ||| ||| || || ||| || |||| || | | || | | || |||
Sbjct 2853 CATCG-ATAGGT-CGGG-GACAGTTTTCGA-TCCAGAAGTTGGTTCAGT-GA-AGGTACA 2906
Query 1107 TGAGAGCAGTCCAAATTGTTATAAAGCCA-AGTTTGTTCATGATGAAGATGAACCTTGGA 1165
||||||||| ||||| ||||| ||||||| | | ||||||||| || ||||| ||||||
Sbjct 2907 TGAGAGCAGACCAAACTGTTACAAAGCCATA-TATGTTCATGAAGATGATGAGCCTTGGT 2965
Query 1166 TAAGAGCTGTTTACTTTGGAGGTCCTGGAGGATGC 1200
|||||||||||||||||||||||||||||||||||
Sbjct 2966 TAAGAGCTGTTTACTTTGGAGGTCCTGGAGGATGC 3000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5