BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23390.1
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492537 jgi|Araly1|492537|fgenesh2_kg.7__1970__AT4G23390.1 1871 0.0
Ahg319549 jgi|Araly1|319549|fgenesh1_pm.C_scaffold_3002565 584 5e-166
Ahg492539 jgi|Araly1|492539|fgenesh2_kg.7__1972__AT4G23370.1 152 6e-36
> Ahg492537 jgi|Araly1|492537|fgenesh2_kg.7__1970__AT4G23390.1
Length=1255
Score = 1871 bits (1013), Expect = 0.0
Identities = 1172/1249 (94%), Gaps = 9/1249 (1%)
Strand=Plus/Plus
Query 1 ATATAGATTAAGATCCTTGATTCATCATGAGGTATTCCAATAAACTAATTATCTTGCTAA 60
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1 ATATAGATTAAGATCCTTGATTCATCATGAGGTATTCCAATAAAC---TTATTTTGCTAA 57
Query 61 CTTTATCAACAATAGCTCTCATTTTAGTTGGAGAGAGTCACAAAACAATACCTTCGAAAG 120
||||||||||||| ||||||||||||||||| |||||||||||| || | |||||| | |
Sbjct 58 CTTTATCAACAATGGCTCTCATTTTAGTTGGGGAGAGTCACAAATCAGTTCCTTCGGATG 117
Query 121 AGGAGAAAGAAGAGATGAAGAAGCTACTTACCTATCTCAATAAACCTGCAGTCAAAAGTT 180
||||| ||||||||||| ||||| |||| | |||||||||||||||||||||||||||||
Sbjct 118 AGGAGGAAGAAGAGATGGAGAAGTTACTCAACTATCTCAATAAACCTGCAGTCAAAAGTT 177
Query 181 TCCAAACTGAACATGGTTATATATTTGACTGCATCGACATTCAAAAACAGCTAGCTTTTG 240
|||||||||||| |||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 178 TCCAAACTGAACCTGGTTATATATTGGATTGCATCGACATTCAAAAACAGTTAGCTTTTG 237
Query 241 ATCATCCTTTGCTCAAGAACCATTCTATTAAGTTGAAACCCACAACTATACCTAAATGGA 300
|||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 238 ATCATCCTTTACTCAAGAACCATTCTATTAAGTTGAAGCCCACAATTATACCTAAATGGA 297
Query 301 CCAAAGATAACAACGCTTCTCATAAAACTAGTTC-TCTGCCATTTCGACAAGATGACATA 359
|||||||||||||| ||||||||||| ||||||| | |||||||||||||||||| ||||
Sbjct 298 CCAAAGATAACAACACTTCTCATAAATCTAGTTCAT-TGCCATTTCGACAAGATGGCATA 356
Query 360 AGTTGTCCAGTTGGGACAGTCATTGTCAAAAGAATTATACTTGAAGATCTTATACGAGCT 419
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||
Sbjct 357 AGTTGTCCAGTTGGGACAGTCATTGTAAAAAGGATTATACTTGAAGATCTTATACAAGCT 416
Query 420 CAACGTTTGCAATCCTTACGATTCAACTATCCAGGACAAGTGTCTGCAAAGGACAAGAAA 479
||||||||| |||||||| |||||||||||||||||||| | ||| ||||||||||||||
Sbjct 417 CAACGTTTGAAATCCTTAGGATTCAACTATCCAGGACAAATTTCTTCAAAGGACAAGAAA 476
Query 480 ATTGATTTAACTGGTCATCATTTTGCCACAATTAGTTACAAAGATGACCACTATGGAGCA 539
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 477 ATTGATTTAACGGGTCATCATTTTGCCACAATTAGTTACAAAGATTACCACTATGGAGCA 536
Query 540 AAAGGAAACATTAACGTATGGAATCCAAACGTCTCACCTGATCAATTTAGTCTTGCGGCT 599
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 537 AAAGGAAACATTAACGTATGGAACCCAAATGTCTCACCTGATCAGTTTAGTCTTGCGGCT 596
Query 600 ATGGCTGTATCAGGCAACAAAGGATTTCAAAGCATTTCTGCTGGATGGATTGTGTATCCA 659
||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 597 ATGACTGTCTCAGGCAACGAAGGGTTTCAAAGCATTTCTGCTGGATGGATTGTGTATCCA 656
Query 660 GGGCTAAATCAGAATAATCAAAGTCACTTGTTCACTTACTGGACTGCGGATGGAAATAAT 719
|||||| |||| ||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 657 GGGCTATATCACAATAATCAAAGTCGCTTATTCACTTACTGGACTGCGGATGGAAATAAT 716
Query 720 AAGACTCATTGCTACAATACACTACGTCCTGGGTTTGTACACGTGAGCACCAAGTATGCA 779
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 717 AAGACTCATTGCTACAATACACTATGTCCTGGGTTTGTACACGTGAGCACCAAGTATGCA 776
Query 780 ATTGGAATGCTCGCCCAACCAGTTTCCATTTATGATGGTCAACAATATCAACTAGAAGTC 839
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ATTGGAATGCTTGTCCAACCAGTTTCCATTTATGATGGTCAACAATATCAACTAGAAGTC 836
Query 840 AGCATATATCAGGATCATGTTACAAGAGATTGGTGGTTTGTGCTAAATAACGAGCCAATT 899
|||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 837 AGCATATATCAGGATCATGTTACAGGAGACTGGTGGTTTGTGCTAAATAATGAGCCAATT 896
Query 900 GGATACTGGCCAAAATCATTGTTCACACGTCAAGGTTTAGCTGATGGAGCGAGTGCCGTG 959
||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct 897 GGATATTGGCCAAAATCATTGTTCAAACCTCAAGGTTTAGCTGATGGAGCGAGTGCGGTG 956
Query 960 TTTTGGGGAGGAGAAGTGTACAGTTCAGTGAAAGAGAAGAGCCCAAGCATGGGAAGTGGA 1019
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 957 TTTTGGGGAGGAGAAGTTTACAGTTCAGTGAAAGAAAAGAGTCCAAGCATGGGAAGTGGA 1016
Query 1020 CATTTCCCACAAGAGGGTTTCAAGAAAGCAGCCTATGTGAATGGTTTAAAAATAATCACT 1079
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1017 CATTTCCCACAAGAGGGTTACAAGAAAGCAGCCTATGTGAATGGTTTTAAAATAATCACT 1076
Query 1080 GATATAACAAAAGAAGTTTCGAGTCCGTTAGCTTCAGCTTTAAAGACATTCGCA-AGCAG 1138
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 1077 GATATAACAAAAGAAGTTTCGAGTCCGTTAGCTTCAGCTTTAAAGACAGTCGCAGA-CAG 1135
Query 1139 TCCAAACTGTTATAATGTCCAA-AAAATATTAGGTGTTGGTGAATTTTGGTCAAGAGCTA 1197
||||||||||||||| || || |||||||||||||||||||||| ||||||||||||||
Sbjct 1136 TCCAAACTGTTATAACGTG-AAGAAAATATTAGGTGTTGGTGAATATTGGTCAAGAGCTA 1194
Query 1198 TTTTATTTGGAGGACCTGGAGGATGCATATTTTAGTTTACTTGTCTTAA 1246
| ||||||||||||||||||||||||| ||||||||| |||| |||||
Sbjct 1195 TCTTATTTGGAGGACCTGGAGGATGCACATTTTAGTTAACTTAACTTAA 1243
> Ahg319549 jgi|Araly1|319549|fgenesh1_pm.C_scaffold_3002565
Length=1179
Score = 584 bits (316), Expect = 5e-166
Identities = 903/1175 (77%), Gaps = 85/1175 (7%)
Strand=Plus/Plus
Query 104 AACAATACCTTCGAAAGAGGAGAAAGAA-GAGATGA-AGAAGCTACT-TACCTATCTCAA 160
||| ||||| || |||||||| ||| || ||| | | |||| ||||| ||| || | ||
Sbjct 44 AACCATACCATCAAAAGAGGAAAAAAAATGAGCT-AGAGAAACTACTCAACC-ATATTAA 101
Query 161 TAAACCTGCAGTCAAAAGTTTCCAAACTG-AACATGGTTATATATTTGACTGCATCGACA 219
|||||| ||||| |||||||| ||||| | |||||||||| ||||| |||||||||||||
Sbjct 102 TAAACCCGCAGTAAAAAGTTTTCAAAC-GAAACATGGTTACATATTGGACTGCATCGACA 160
Query 220 TTCAAAAACAGCTAGCTTTTGATCATCCTTTGCTCAAGAACCATTCTATTAAGTTGAAAC 279
||||||| |||||||| ||||||||||||| |||||| |||||||| ||| ||||||| |
Sbjct 161 TTCAAAAGCAGCTAGCCTTTGATCATCCTTCGCTCAAAAACCATTCGATTCAGTTGAAGC 220
Query 280 CCACAACTATACCTAAATGGACCAA-AGATAACAACGCTTCTCATAAAA-CTAGTTCTCT 337
| |||| |||||||||||||| ||| |||||||||| ||||||| |||| | ||||||||
Sbjct 221 CTACAATTATACCTAAATGGA-CAAGAGATAACAACACTTCTCA-AAAATCAAGTTCTCT 278
Query 338 GCCATTTCGACAA---GATGACATAAGTTGTCCAGTTGGGACAGTCATTGTCAAAAGAAT 394
||||||||||||| || ||||||||||||||| |||| ||||| ||| | |||||||
Sbjct 279 GCCATTTCGACAAGCTGACGACATAAGTTGTCCACTTGGAACAGTGATTATTAAAAGAAC 338
Query 395 TATACTTGAAGATCTTATACGAGCTCAACGTTTGCAATCCTTACGATTCAACTATCCAGG 454
|| ||||||||||||||||| | |||||||||| |||||||| | ||||| |||||||
Sbjct 339 TACACTTGAAGATCTTATACAATTTCAACGTTTGAAATCCTTAGGGTTCAAGTATCCAGC 398
Query 455 A---CAAGTGTCTGCAAAGGACAAGAAAATTGATTTAACTGGTCATCATTTTGCCACA-A 510
| ||| | | | || | | | | | | ||| ||||||||||||| | |
Sbjct 399 ACCCCAA--GACGGGAACTGCCCCG----GT-A-TGAAC-CGTCATCATTTTGCGATAGC 449
Query 511 TTAGTTAC-A-AAGATGACCACT-ATGGAGCAAAAGGAAACATTAACGTATGGAATCCAA 567
| || ||| | || | || || | ||||||||| ||||||||||| || || ||||
Sbjct 450 TCAG-TACTATAA-A-GA-CAATGATGGAGCAAGGGGAAACATTAATATAGGGGATCCGT 505
Query 568 ACGTCTCACCTGATCAATTTAGTCTTGC-GGCTATGGCTGTATC-AG-GC-AAC--AAAG 621
||| | ||||||| |||||| || | ||| ||| || || || | |||
Sbjct 506 TTGTCAAAGATGATCAACTTAGTCCAGCAAG-TATATCTG--TCGAGAGCGGTCTTAAA- 561
Query 622 GAT---TT-CAAAGCATTTCTGCTGGATGGATTGTGTATCCAGGGCTAAATCAGAATAAT 677
||| || || ||||| || ||||||||||| || | ||| | || ||| |||
Sbjct 562 GATACGTTACAGAGCATCTCAGCTGGATGGATAGTATCCCCAAAATTGAACCAG---AAT 618
Query 678 CAAAGTCACTTGTTCACTTACTGGACTGCGGATGGAAATAATAAGACTCATTGCTACAAT 737
|| ||| ||| || || || ||| | | ||||| |||| || || |||||| | |
Sbjct 619 CATAGTGGCTTATTTACATATTGGTCGGTAAATGGATATAACAAAACAGGTTGCTATAGT 678
Query 738 ACACTACGTCCTGGGTTTGTACACGTGAGCACCAAGTAT-GCAATTGGAATGCTC--GCC 794
||| || ||||||||||||| || || |||| ||||| | || |||| | |||| |||
Sbjct 679 ACATTATGTCCTGGGTTTGTTCAAGTAAGCAGCAAGT-TCGCTCTTGG-A-GCTCGTGCC 735
Query 795 CAACCAGTTTCCATTTATGATGGTCAACAATATCAACTAGAAGTCAGCATATATCA-GGA 853
|||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||
Sbjct 736 GAACCTGTTTCCATTTATGATGGTCAACAATATCAGTTAGAAGTCAGCTTAT-TCAAGGA 794
Query 854 TCATGT-TACAAGAGATTGGTGGTTTGTGCTAAATAACGAGCCAATTGGATACTGGCCAA 912
| || | |||| |||||||||||||||||||| ||||||||||||| || |||||||
Sbjct 795 TTAT-TATACAGGAGATTGGTGGTTTGTGCTAGGCGACGAGCCAATTGGGTATTGGCCAA 853
Query 913 AATCATTGTTCACACGTC-AAGGTTTAGCTGATGGAGCGAGTGCCG-TGTTTTGGGGAGG 970
|||||||||| || | |||| |||||| ||||||| | | | | | |||||||||||
Sbjct 854 GATCATTGTTC-CATTTTGAAGGCTTAGCTAATGGAGCAAAT-CGGATATTTTGGGGAGG 911
Query 971 AGAAGTGTACAGTTCAGTG-AAAG-A-GA-AGAGCCCAAGCATGGGAAGTGGACATTTCC 1026
|||||| | ||||||||| ||| | || | ||||||| |||||||||||||||||| |
Sbjct 912 AGAAGTTTTTAGTTCAGTGGAAAACATGATA-AGCCCAATCATGGGAAGTGGACATTTTC 970
Query 1027 CACAAGAGGG-TTTCAAGAAAG-CAGCCTATGTGAATGGT-TTAAAAATAATC-ACTGAT 1082
|||||||||| ||| || |||| |||| | |||||||||| ||||| | ||| | | ||
Sbjct 971 CACAAGAGGGCTTT-AA-AAAGGCAGCTTTTGTGAATGGTCTTAAAG-TGATCGA-TCAT 1026
Query 1083 ATAACAAAAGAAGTTTCGAGTCCGTTAGCTTCAGCTTTAAAGACATTCGCAAGCAGTCCA 1142
| ||||||||||| |||||| | |||| | | ||| | ||| |||| |||||||
Sbjct 1027 GTTTCAAAAGAAGTTAGGAGTCCCCCAACTTCGGGTCTAATGTTATTTGCAAACAGTCCA 1086
Query 1143 AACT-GTTATAATGTCCAAAAAATATTAG-GTGTTGGTGAATTTTGGTCAAGAGCTATTT 1200
| || ||||||| ||||||| |||| | | |||||||| ||||| || || ||||
Sbjct 1087 A-CTTGTTATAACGTCCAAACGATATCAACG-GTTGGTGAGGAGTGGTCTAGTGCAATTT 1144
Query 1201 TATT-TGGAGGACCTGGAGGATGCATATTTTAGTT 1234
| || ||||||||| |||||||||| | || ||||
Sbjct 1145 T-TTATGGAGGACCAGGAGGATGCACAATT-AGTT 1177
> Ahg492539 jgi|Araly1|492539|fgenesh2_kg.7__1972__AT4G23370.1
Length=3012
Score = 152 bits (82), Expect = 6e-36
Identities = 197/249 (79%), Gaps = 21/249 (8%)
Strand=Plus/Plus
Query 985 CAGTGAAAGAGAAGAGCCCAAGCATGGGAAGTGGACATTTCCCACAAGAGGGTTTCAAGA 1044
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 602 CAGTGAAAGAGAAGAGTCCAAGCATGGGAAGTGGACATTTCCCAGAAGAGGGTTTCAAGA 661
Query 1045 AAGCAGCCTATGTGAATGGT-TTAAAAATAATC-ACTGATA-TAACAAAAGAAGTTTCGA 1101
||||||||||||||| |||| || || || || | |||| ||| | |||| |||||
Sbjct 662 AAGCAGCCTATGTGAGTGGTATTGAAG-TAGTCGAA-GATACTAA-ATTGGAAGGTTCGA 718
Query 1102 -G--TCCGTTAGCTTCAG-CTTTAA-AGACATTCGCAAGCAGTCCAAACTGTTATAATGT 1156
| ||| | ||||| || ||| | ||||| |||||| ||||| ||||| || |
Sbjct 719 TGGGTCCACCA-CTTCATTCTCTAACA-ACATTTTCAAGCACCCCAAATTGTTACAAAG- 775
Query 1157 CCA-AAA-AATATTAGGTGTTGGTGAATTTTGG--TCAAGAGCTATTTTATTTGGAGGAC 1212
||| ||| || | |||| |||||||| ||||| | || |||||||| |||||||| |
Sbjct 776 CCATAAAGAA-ACCAGGTATTGGTGAACTTTGGGAT-AAC-GCTATTTTCTTTGGAGGGC 832
Query 1213 CTGGAGGAT 1221
| |||||||
Sbjct 833 CAGGAGGAT 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50093512938
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5