BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23410.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945773 jgi|Araly1|945773|scaffold_702002.1 1391 0.0
> Ahg945773 jgi|Araly1|945773|scaffold_702002.1
Length=886
Score = 1391 bits (753), Expect = 0.0
Identities = 844/888 (95%), Gaps = 6/888 (1%)
Strand=Plus/Plus
Query 123 AAAAGGAGAGAGAAGGAAAATGAACAGAATGAGCAATACAGTGATAGGATTCTTGAATAT 182
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AAAA-GAGAGAGAAGGAAAATGAACAGAATGAGCAATACAGTGATAGGATTCTTGAATAT 61
Query 183 CCTAACACTAATTTCCTCCATAGT-TCTATTAGGATCAGCTCTATGGATGGGTAGGAGCA 241
|||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||
Sbjct 62 CCTAACACTAATTTCCTCCATAGTGT-TATTAGGATCAGCTCTATGGATGGGTAAGAGCA 120
Query 242 AAACGACATGCGAGCATTTTCTTCAGAAGCCACTTTTGATCTTAGGCCTAGCTATCTTGA 301
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGACAACATGCGAGCATTTTCTTCAGAAGCCACTTTTGATCTTAGGCCTAGCTATCTTGG 180
Query 302 TCTTGTCAGTAGCTGGTCTAGTCGGTGCATGTTGTGACGTGGCTTGGGTCTTGTGGGTGT 361
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTTGTCAATAGCTGGTCTAGTCGGTGCATGTTGTGACGTGGCTTGGGTCTTGTGGGTGT 240
Query 362 ACCTCTTCTTCATGGTCTTCATCATAGTCGCACTCATGGGTTTGACCTTGTTTGGATTCA 421
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 241 ACCTCTTCTTCATGGTCTTCATCATAGTCGCGCTCATGGGTTTGACCTTGTTTGGGTTCA 300
Query 422 TAGTGACTAGCCATAGTGGTGGTGTGGTTGTCGATGGTAGGGTTTATAAAGAGTTTAAGC 481
|||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 301 TAGTGACTAGCCATGGTGGTGGTGTGGGTGTGGATGGTAGGGTTTATAAAGAGTTTAAGC 360
Query 482 TTGAAGCATATCACCCTTGGCTTAAGACAAGGGTGGTAGATACTAATTATTGGGTTACTA 541
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 TTGAAGCATATCACCCTTGGCTTAAGACAAGAGTGGTAGATACTAATTATTGGGTTACTA 420
Query 542 TAAAGACTTGTCTCTTGGGCTCAGTCACTTGTTCCAAGCTCGCTCTTTGGACTCCTCTTG 601
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 421 TAAAGACTTGTCTATTGGGCTCTGTCACTTGTTCCAAACTCGCTCTTTGGACTCCTCTTG 480
Query 602 ATTATCTCCAAAAAGACTTATCTCCTCTTCAGTCTGGATGCTGCAAACCACCGACGTCGT 661
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 ATTATCTCCAAAAGGACTTATCTCCTCTTCAGTCTGGATGCTGCAAACCACCGACGTCAT 540
Query 662 GCGTTTACAACACGGACACGGTGATACAACAAGACCCTGATTGTTACCGGTGGAACAACG 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 GCGTTTACAACACGGACACGGTGATACAACAAGACCCTGATTGTTACCGGTGGAGCAACG 600
Query 722 CAGCGACGGTGCTCTGCTATGATTGTGACACGTGTAGAGCTGGCGTTTTAGAGACTGTAC 781
| ||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||| || |
Sbjct 601 CTGCGACAGTGCTTTGCTACGATTGTGACTCGTGTAGAGCTGGCGTTTTAGAGACCGTGC 660
Query 782 GTCGCGATTGGCACAAACTCTCTCTAGTGAACGTCATTGTTGTTATTTTCCTCATAGCTG 841
||||||||||||||||||| |||||||| |||||| | |||||| |||||||||| || |
Sbjct 661 GTCGCGATTGGCACAAACTATCTCTAGTTAACGTCGTCGTTGTTCTTTTCCTCATCGCGG 720
Query 842 TTTACTGTGTTGGCTGTTGCGCGTTTAAAAACGCCAAACGCCCTCAACATTACGGCTTCC 901
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 TTTACTGCGTTGGCTGTTGCGCGTTTAAAAACGCCAAACGCCCTCAACATTACGGCTTTC 780
Query 902 CTTATGGACGTTACGGCATGTCCAAATC-CAGACCTGGATGGGAACAGTCCTGGTCAAGG 960
|||| ||||||||||||||||||||||| | |||| |||||||||||||||||||| ||
Sbjct 781 CTTACGGACGTTACGGCATGTCCAAATCTC-GACCCGGATGGGAACAGTCCTGGTCGAGA 839
Query 961 TGGTGGCATGGGAGAGATCGGTATTAGTGAAAAATATTTATGTTAATG 1008
||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 840 TGGTGGCATGGGAGAGATCGGTATTAGTGAAAAATATGTATGT-AATG 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5