BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23430.2
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492531 jgi|Araly1|492531|fgenesh2_kg.7__1964__AT4G23430.1 1772 0.0
> Ahg492531 jgi|Araly1|492531|fgenesh2_kg.7__1964__AT4G23430.1
Length=1236
Score = 1772 bits (959), Expect = 0.0
Identities = 1168/1261 (93%), Gaps = 45/1261 (4%)
Strand=Plus/Plus
Query 33 AGCGAAATCGCTTGACCACTCAAGAAGAGAAAAACGCTAACAAGTCCCATAGTTTGTGT- 91
||||||||| || ||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 1 AGCGAAATCACTCGACCACTCAAGAAGAGAAAAATGCTAACAACTCTCATAGTTTGTGTC 60
Query 92 TTATTGGACTTCTTTCCTCTCATCTTCTCC-A------GC---AGAAACaaaaaaaGCTG 141
||| |||||||||||||||||||||| | | ||||| ||||||| | |
Sbjct 61 AAATT---CTTCTTTCCTCTCATCTTCTCCAATTCTTCTCAAAAGAAA-AAAAAAAACAG 116
Query 142 AAAGATGTGGTTTTTTGGATCGAAAGGAGCATCTGGATTCTCGTCTCGTTCAACTGCAGA 201
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 117 AAAGATGTGGTTCTTTGGATCGAAAGGAGCATCTGGATTCTCGTCTCGTTCCACTGCAGA 176
Query 202 GGAAGTCACACATGGTGTTGATGGGACTGGTCTCACTGCCATAGTCACAGGAGCATCAAG 261
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 177 GGAAGTCACACATGGTGTTGATGGGACTGGCCTCACTGCCATAGTCACAGGAGCATCAAG 236
Query 262 TGGTATAGGAGTAGAGACAGCGCGTGTTCTTTCACTGCGTGGTGTGCATGTGGTTATGGC 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TGGTATAGGAGTAGAGACAGCGCGTGTTCTTTCACTGCGTGGTGTGCATGTGGTTATGGC 296
Query 322 GGTGAGGAACACTGA-CTCTGGTGCTAAAGTTAAGGAAGATATTGTCAAGCAAGTCCCTG 380
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGTGAGGAACACT-AGCTCTGGTGCTAAAGTTAAGGAAGATATTGTCAAGCAAGTCCCTG 355
Query 381 GAGCTAAACTCGATGTCATGGAGTTAGATCTCAGCTCAATGCAATCTGTCAGGAAATTTG 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GAGCTAAACTCGATGTCATGGAGTTAGATCTCAGCTCAATGCAATCTGTCAGGAAATTTG 415
Query 441 CGTCTGAGTACAAATCTACTGGTCTTCCACTCAACCTCTTGATCAACAATGCCGGGATTA 500
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CATCTGAGTACAAATCTGCTGGTCTTCCACTCAACCTCTTGATCAACAATGCCGGGATTA 475
Query 501 TGGCATGTCCTTTTATGCTCTCTAAGGACAACATCGAGCTGCAATTCGCAACCAATCATT 560
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TGGCTTGTCCTTTTATGCTCTCTAAGGACAACATCGAGCTGCAATTCGCAACCAATCATT 535
Query 561 TAGGTCATTTTCTGTTGACTAAACTTCTGCTAGATACAATGAAGAGCACATCACGTGAAA 620
||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||
Sbjct 536 TAGGTCATTTTCTGTTGACCAAACTTCTGCTAGATACAATGAAGAACACATCGCGTGAAA 595
Query 621 GCAAACGAGAAGGAAGAATTGTTAACCTATCATCAGAAGCTCATCGGTTCTCGTATCCAG 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 596 GCAAACGAGAAGGAAGAATTGTTAACCTATCATCAGAAGCTCATCGGTTCTCGTACCCAG 655
Query 681 AAGGAGTTCGTTTTGATAAGATCAATGACAAGTCAAGTTACAGTAGTATGCGAGCTTATG 740
||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 656 AAGGAGTCCGCTTTGATAAAATCAACGACAAGTCAAGTTACAGTAGTATGCGAGCTTATG 715
Query 741 GACAATCTAAACTCTGCAATGTGTTGCACGCCAACGAGCTTACAAAGCAACTGAAGGAAG 800
|||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 716 GACAGTCTAAACTGTGCAATGTGTTGCACGCCAACGAGCTTGCAAAGCAACTGAAGGAAG 775
Query 801 ATGGAGTCAATATAACAGCAAATTCGCTTCATCCAGGAGCCATTATGACTAACCTCGGGC 860
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 776 ATGGAGTCAATATAACTGCAAATTCGGTTCATCCAGGAGCCATTATGACTAACCTCGGGC 835
Query 861 GCTACTTCAACCCCTATTTGGCTGTAGCGGTTGGTGCAGTGGCTAAATATATACTCAAGT 920
|||||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||||
Sbjct 836 GCTACTTCAACCCCTATTTGGCTGGAGCTGTTGGTGCAGTCGCTAAATATATCCTCAAGT 895
Query 921 CTGTTCCACAGGGAGCGGCAACAACTTGCTATGTGGCATTGAATCCTCAAGTTGCAGGAG 980
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CTGTTCCACAGGGGGCGGCAACAACTTGCTATGTGGCATTGAATCCTCAAGTTGCAGGAG 955
Query 981 TTTCAGGGGAATACTTCCAAGATAGCAACATTGCTAAACCATTACCACTTGTCAAAGATA 1040
|| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TTACAGGAGAATACTTCTTAGATAGCAACATTGCTAAACCATTACCACTTGTCAAAGATA 1015
Query 1041 CAGAATTGGCCAAGAAGGTTTGGGATTTCAGCACCAAGCTTACCGATTCACAATCAGGAG 1100
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1016 CAGAATTGGCCAAGAAGGTTTGGGATTTCAGCACTAAGCTTACCGATTCGCAATCAGGAG 1075
Query 1101 AAAGCAGTTCTTGAAAGTAAAT-GATGTTCAGTGAATCTTTACTAATGGTTTCATGTTTC 1159
|||| ||||||||||||||||| ||||||||||||| |||| |||||||||| | |
Sbjct 1076 AAAGTAGTTCTTGAAAGTAAATAGATGTTCAGTGAACCTTTCCTAATGGTTT--T----C 1129
Query 1160 AACGTCTCTTATCTCTACTGTGACAATACTTATTTCAGTCTTTATCAAAGGAAATAAAAA 1219
||| | || ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1130 ----TCT---A-CT-----GTGACAATACTTATTTCAGCCTTTATCAAAGGAAATAAAAT 1176
Query 1220 CGTATAACAAATCTGCAATAAGATGGTTTA-TTCTG------ACCGGTTTAGTTCTAAAC 1272
||||||||| ||||||||||| ||||||| ||||| |||||||||||||| |||
Sbjct 1177 -GTATAACAATTCTGCAATAAGGTGGTTTACTTCTGTTTCTGACCGGTTTAGTTCTCAAC 1235
Query 1273 C 1273
|
Sbjct 1236 C 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47806137918
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5