BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23440.1
Length=3062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492529 jgi|Araly1|492529|fgenesh2_kg.7__1962__AT4G23440.1 4922 0.0
> Ahg492529 jgi|Araly1|492529|fgenesh2_kg.7__1962__AT4G23440.1
Length=3058
Score = 4922 bits (2665), Expect = 0.0
Identities = 2930/3061 (96%), Gaps = 5/3061 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCTCGAGGTGACAGTTCTAGGTTCGGGCAATATCCGACAAAGCCTACAAGGAAC 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGATTCTCGAGGTGATAGTTCTAGGTTCGGGCAATATCCGACAAAGCCTACTAGGAAC 60
Query 61 ATGTCTTCATCTTCATCAGCTGCTTTCTTCTCAGCTAATCAGTCTCCGTTTTTCTCACCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGTCTTCATCTTCATCAGCTGCTTTCTTCTCAGCTAATCAGTCTCCGTTTTTCTCACCA 120
Query 121 AGATCTCCTAAAATCCAACAAGAACTATCTGAATCTACTCGCTCTGATGCTCAATGTGAT 180
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 121 AGATCTCCTAAAATCCAACAAGAACTATCTGAATCTACTAGGTCTGATGCTCAATGTGAT 180
Query 181 AGCTTTGATCCTCTTAGCTCCAGCTCTGGTTTTCAAGAGCCTGAGCTTGCGTTTTTAACC 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 AGCTTTGATCCTCTTAGCTCCAGCTCTGGTTTTCAAGAACCTGAGCTTGCGTTTTTAACC 240
Query 241 GCTCCTAATCAATGTCAGAGCCTTGAGGCTGCTGATCGAATCGCTTCGAGTAGTATGATC 300
|| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 241 GCACCTAATCAATGTCAGAGCCTCGAGGCTGCTGATCGAATCGCTTCGAGTAGTGTGATC 300
Query 301 TCTTGTACTCCTTCTAGATATGGAAGAGGTCATGAGTCTTCTTCGTATACTCAGACATCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTTGTACTCCTTCTAGATATGGAAGAGGTCATGAGTCTTCTTCGTATACTCAGACATCT 360
Query 361 TCTGTATCTGTTTCTTATAATAGGTTGAGATGTTGTGATGTGTTTATAGGATTGTATGGT 420
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TCTGTCTCTGTTTCTTACAATAGGTTAAGATGTTGTGATGTGTTTATAGGATTGTATGGT 420
Query 421 CAGAAGCCTTCTTTGCTTCGGTTTGCGGATTGGCTTAGAGCTGAGTTAGAGTTTCAAGGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAGAAGCCTTCTTTGCTTCGGTTTGCGGATTGGCTTAGAGCTGAGTTAGAGTTTCAAGGG 480
Query 481 ATGAGTTGTTTTATGTCGGATAGAGGAAGATGTAGGAGTTCACGGAAACAGAGAATAGTT 540
||||||||||| |||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 481 ATGAGTTGTTTCATGTCGGATAGAGGGAGATGTAGGAGTTCAAGGAAACAAAGAATAGTT 540
Query 541 GAGAGAGCGATGGATGGTGCGTCGTTTGGAGTTATAATACTAACGAGAAAGGCGTTTAAG 600
|||||||||||||||||||| ||||| || ||||| || |||||||||||||||||||||
Sbjct 541 GAGAGAGCGATGGATGGTGCATCGTTCGGGGTTATTATTCTAACGAGAAAGGCGTTTAAG 600
Query 601 AATCCTTATACGATTGAGGAGCTACGGTTTTTCGCAAACAAGAAGAATCTTGTTCCGGTT 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATCCTTACACGATTGAGGAGCTACGGTTTTTCGCAAACAAGAAGAATCTTGTTCCGGTT 660
Query 661 TTCTTTGATCTTTCTCCTGGAGAGTGTCTTGTGAGAGATATAGTTGAGAAGAGAGGAGAT 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 TTCTTTGATCTTTCTCCTGGAGACTGTCTTGTGAGAGATATAGTTGAGAAGAGAGGAGAT 720
Query 721 TTGTGGGAGAAACATGGAGGGGAATTGTGGGTTTTGTATGGTGGGATTGAGAAAGAATGG 780
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 721 TTGTGGGAGAAACATGGAGGGGAATTGTGGGTTTTGTATGGAGGGATTGAGAAAGAGTGG 780
Query 781 AAAGAGGCGGTTCACGGGCTATCGCGGGTTGATGATTGGAAGCTTGAAGCTCATGAAGGT 840
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAAGAGGCGGTTCACGGGTTATCGCGGGTTGATGATTGGAAGCTTGAAGCTCATGAAGGT 840
Query 841 AACTGGAGAGATTGTGTTTTCAGGGCGGTTACTTTATTGGCAATGCGGTTAGGGAGGAGA 900
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 841 AACTGGAGAGATTGTGTTTTCAGGGCAGTTACTTTGTTGGCAATGCGGTTAGGGAGGAGA 900
Query 901 AGTATAGTGGAACGGTTAACGAAATGGCGGGATAAAGCGGAGAAAGAGGAGTTTCCGTAT 960
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 901 AGTATAGTGGAGCGGTTAACGAAATGGCGGGATAAAGCGGAGAAAGAGGAATTTCCGTAT 960
Query 961 CCGCGGAATGAGAGTTTTGTTGGGAGGAAGAAGGAGTTATCTGAGCTAGAGTTTGTTTTA 1020
|||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 961 CCGCGGAACGAGAATTTTGTTGGGAGAAAGAAGGAATTATCTGAGCTAGAGTTTGTTTTA 1020
Query 1021 TTTGGAGATGTTGCTGGAGATTCTGAAAGGGATTACTTTGAGTTAAAGGCAAGGCCGACA 1080
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1021 TTTGGAGATGTTGCTGGAGATTCGGAAAGGGATTACTTTGAGCTAAAGGCAAGGCCGACA 1080
Query 1081 AGAAGGAAGAAGAACGTGACGCTCGGGTGGAATAAAAGCGGTTCAGCggaagaaagacgg 1140
||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1081 AGAAGGAAGAAGAACATTACGCTCGGGTGGAATAAAAGCGGTTCAGCAGAAGAAAGACGG 1140
Query 1141 aagaaagggaaggaaaaagttgtgtggaaggagtcagagaaagagaTTGAGATGCAAAGT 1200
|||||||| || || |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1141 AAGAAAGGCAAAGAGAAAGTTGTGTGGAAGGAGTCGGAGAAAGAGATCGAGATGCAAAGT 1200
Query 1201 ACAGAGATGCCTTCACGGAGTCAAGTGAAAGTAGGGCGAAACACGAGGAGAAAACGGTCG 1260
|||||| |||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1201 ACAGAGTTGCCCTCCCGGAGTCAAGTGAAAGTAGGGAGAAACACGAGGAGAAAACGGTCG 1260
Query 1261 ATGAAGGTTGTTTACGGGAAAGGCGTGGCTTGCGTGTCAGGTGAATCAGGGATTGGAAAA 1320
|||||| |||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1261 ATGAAGATTGTTTACGGGAAAGGCGTGGCTTGCATCTCGGGTGAATCAGGGATTGGAAAA 1320
Query 1321 ACTGAGCTGCTTCTTGAATTTGCTTACAGGCATCACCAAAGGTATAAGATGGTTCTTTGG 1380
||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct 1321 ACTGAGCTGCTTCTTGAATTTGCTTGCCGGCATCACCAGAGGTATAAGATGGTTCTTTGG 1380
Query 1381 ATAGGTGGTGAGAGCCGTTACATAAGACAGAACTATCTGAATCTTTATCAGTATTTGGAA 1440
||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1381 ATAGGCGGCGAGAGCCGTTACATGAGACAAAACTATCTGAATCTTTATCAGTATTTGGAA 1440
Query 1441 GTCGACATCGGGATAGAGAATTCTTCGGATAAAACGCGGATGAAGAGCTTCGAAGAGCAA 1500
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1441 GTCGACATTGGGATAGAGAATTCTTCTGATAAAACGCGGATGAAGAGCTTCGAAGAGCAA 1500
Query 1501 GAAGATGCTGCGGTTTCCAAGATTAGAAAAGAGCTGATGAGGAATATACCGTTCTTGGTT 1560
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GAAGACGCTGCGGTTTCAAAAATTAGAAAAGAGCTGATGAGGAATATACCGTTCTTGGTT 1560
Query 1561 GTCATTGATAACTTGGAGAGTGAAAAAGACTGGTGGGATTCGAAGCTTGTGATGGATCTT 1620
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1561 GTCATCGATAACTTGGAGAGTGAAAAAGACTGGTGGGATTCGAAGCTCGTGATGGATCTT 1620
Query 1621 CTTCCTCGGTTTGGAGGCGGGACTCATATTTTGATATCTACACGTCTCTCTCAAGTTATG 1680
|||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 1621 CTTCCTAGGTTTGGAGGCGGGACTCACATTTTGATATCTACGCGTCTCTCCCAAGTTATG 1680
Query 1681 AACATGGAGCCGTTGAAACTCTCTTACCTCTCTGGTGCTGAAGCTATGTCGTTGATGCAG 1740
||||||||||| ||||||||||| ||||| ||||| |||||||||||||| |||||||||
Sbjct 1681 AACATGGAGCCATTGAAACTCTCCTACCTTTCTGGGGCTGAAGCTATGTCATTGATGCAG 1740
Query 1741 GGGAATGTTAAAGATTATCCGGTTTCGGAAATGGATGCATTGAGAACTATTGAAGATAAA 1800
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1741 GGGAATGTGAAAGATTATCCGGTTTCGGAAATGGATGCATTGAGAACGATTGAAGATAAA 1800
Query 1801 CTCGGACGGTTAACGTTGGGATTAGCAGTCGTAGGAGCAATATTGTCAGAGCTTCCTATA 1860
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1801 CTTGGGCGGTTAACGTTGGGATTAGCAGTTGTAGGAGCAATATTGTCAGAGCTTCCTATA 1860
Query 1861 AACCCGAGCCGGCTTTTGGATACTATAAATAGAATGCCGTTAAGAGAGATGGTGTGTAGT 1920
||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||
Sbjct 1861 AACCCGAGCCGGCTTTTGGATACAATAAACAGAATGCCGTTAAGAGAGATGATAAGTAGT 1920
Query 1921 GGTCGAGAGGGGAATCTGTTGAGAAGAAATGCGTTTCTGTTGCAGCTGTTTGAAGTTTGT 1980
||||| || |||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1921 GGTCGGGACGGGAATCTGTTGAGAAAAAACGCGTTTCTGTTGCAGCTGTTTGAAGTTTGT 1980
Query 1981 TTTTCGATCTTTGATCACGCGGATGGACCTAGAAGTTTGGCTACGAGAATGGTTGTTGCT 2040
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1981 TTTTCGATCTTTGATCACGCGGATGGACCGAGAAGTTTGGCTACGAGAATGGTTGTTGCG 2040
Query 2041 AGTGGGTGGTTAGCTCCTGCACCAGTTCCAGCTTCTTTATTAGCTTTGGCTGCTCATAAA 2100
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 2041 AGTGGGTGGTTAGCTCCGGCACCAGTTCCAGCTTCTCTATTAGCTTTGGCTGCTCATAAA 2100
Query 2101 CTCCCTGAGAAACACAGAGGTCCGAAGCGGCTATGGAGAAGACTAAGGCGCGCTATAACC 2160
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2101 CTCCCTGAGAAACACAGAGGTCCGAAGCGGCTATGGAGAAGACTAAGACGAGCTATAACC 2160
Query 2161 TGCGGTTTTACGTCTTCAAACTCCAAACGATCAGGAGCTGAAGCTGCTTCAATGCTACTT 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 TGCGGTTTTACGTCTTCAAACTCCAAACGATCAGGAGCTGAAGCTGCTTCAATGCTACTT 2220
Query 2221 AGATTCAACATTGCTCGAACCAGCAGCATCAAGCTAGGGTTTATACAGATCCACGAGCTT 2280
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2221 AGATTCAACATTGCTCGAACCAGCAGCATCAAGCTAGGGTTTATACAAATCCACGAGCTC 2280
Query 2281 GTGAAACTCTATGCGAGAAATCGAGTACTGGTCAATGAAAACGCTCCCGCAATGGTTCAG 2340
|||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||
Sbjct 2281 GTGAAACTCTATGCGAGAAACCGAGTACTGGTCAACGACAACGCGCCCGCAATGGTTCAG 2340
Query 2341 GCGGTGATAAGCCGCGGCTCGACTGTTGAAACCGCAGAGCAGATCTGGGCGGTTTGTTTC 2400
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 2341 GCGGTGATAAGCCGCGGCTCGACCGTTGAAACCGCAGAGCAGATCTGGGCAGTTTGTTTC 2400
Query 2401 TTGCTGTTTGGTTTTAGCAACGAATCTCCGACTATTCAGCTGAAGATAACAGAGCTGCTG 2460
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2401 TTGCTATTTGGTTTCAGCAACGAATCTCCGACTATTCAGCTAAAGATAACAGAGCTGCTG 2460
Query 2461 ATTCTTGTGAAACAAGTAATCTTGCCTCTTGCAATCAGAACGTTCATATCATTTTCGCGA 2520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2461 ATTCTTGTGAAACAAGTAATCTTGCCTCTTGCAATCAGAACGTTCATATCATTTTCGCGA 2520
Query 2521 TGCACAGCCTCAGTGGAGCTACTAAGGGTCTGCACAAACGCACTTGAAGCAGCTGACCAA 2580
||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||| |||
Sbjct 2521 TGCACCGCCGCAGTGGAGCTATTAAGGGTCTGCACAAACGCTCTTGAAGCAGCTGATCAA 2580
Query 2581 ACGCTAGTGACACCAGTAGAGAAATGGCTAGACAAGTCGCTTTGCTGGAGACCAGTTCAG 2640
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2581 ACGCTAGTGACACCAGTAGAGAAATGGTTAGACAAGTCGCTTTGCTGGAGACCAGTTCAG 2640
Query 2641 ACAAGTGCACAACTAAACCCTATTCTATGGGAAGAACTTGCTCTAGCTCGAGCCACCGTG 2700
|||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 2641 ACAAGTGCACAACTTAACCCTATTCTATGGGAAGAACTCGCTCTGGCTCGAGCCACGGTG 2700
Query 2701 CTAGAGACTCGAGCTAAGCTGATGTTACGAGGCGGGCAATTTGGTTTGGCTGATGA-CTT 2759
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 2701 CTAGAGACTCGAGCTAAGCTGATGTTACGAGGCGGGCAGTTCGGTTTGGCTGATGATCT- 2759
Query 2760 GATCAGAAAAGCAATCTTCATAAGAACTTCGATCTCAGGAGAGGATCATCCTGGGACTGT 2819
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2760 GATCAGAAAAGCTATCTTTATAAGAACTTCGATCTCAGGAGAGGATCATCCTGGGACTGT 2819
Query 2820 GTCGGCTCGAGAGACATTGAGTAAGTTAACGAGGCTTTTATCCAATGTTCATCAGATTCA 2879
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2820 GTCGGCTCGAGAGACATTAAGTAAGTTAACGAGGCTTTTATCCAATGTTCATCAGATTCA 2879
Query 2880 TAACACTTCACCGTAATAGAGAGAAGCTTTTAGGGCTTTCTTGTTGTAAAAGTTATAAAG 2939
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 2880 TAACACTTCACCGTAATAGAGAGAATTTTTTAGGGCTTTCTTGTTGTAAAAGTTATAT-G 2938
Query 2940 GTTAGAGTTTCTTGttttttttt-AATTATCATTATTTTAGTCATAAGAGTTAGATTTAT 2998
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2939 GTTAGATTTTCTTGTTTTTTTTTTAATTATCATTATTTTAGTCATAAGAGTTAGATTTAT 2998
Query 2999 ACAGAAGGTTTAGTAATaaaaaaaaCTGTTATCTAAGAAATTTGTCAGAGAATCCTTTTT 3058
|||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||
Sbjct 2999 ACAGAAGGTTTAGTAATAAAAACA-CTGTTATGTAAGAAATTTGTCAGAGAATCCTTTTT 3057
Query 3059 T 3059
|
Sbjct 3058 T 3058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115641983820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5