BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23450.2
Length=1327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945769 jgi|Araly1|945769|scaffold_701998.1 749 0.0
> Ahg945769 jgi|Araly1|945769|scaffold_701998.1
Length=509
Score = 749 bits (405), Expect = 0.0
Identities = 475/509 (93%), Gaps = 4/509 (1%)
Strand=Plus/Plus
Query 539 ACTTTATCATACCAAAGAATGGGTTGCTGCTGTTGTCTCCCGAGTATACCCGAAAGCTCA 598
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 ACTCTATTATACCAAAGAATGGGTTGCTGCTGTTGTCTCCCGAGTATACCCGAAAGCTCA 62
Query 599 AGAACTATAGATGAGCATCTTCCCTTATCTCGTGCCACG-CCTTCCTCTCTCTCTAATGC 657
|||||||||||||||||| |||||||||||||||| || |||||||||||||| |||||
Sbjct 63 AGAACTATAGATGAGCATGTTCCCTTATCTCGTGC-ACCACCTTCCTCTCTCTCAAATGC 121
Query 658 ATACAGTTCACCTCTTTCGCCGCCTATTCCTTTAGCCATCACGAATATAAATCTTCAAAC 717
||||| ||| || |||||||||||||||||||||||| | || |||| ||||||||||||
Sbjct 122 ATACACTTCGCCACTTTCGCCGCCTATTCCTTTAGCCTTTACCAATAGAAATCTTCAAAC 181
Query 718 TAGTCCACCGAAATTGCCAAGAACTCAGGGCAATTCGAGTGAAGCATCCCCGGGACTCAC 777
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 182 TAGTCCACCGAAATTGCCAAGAACTCAGAGCAATTCGAGCGAAGCATCCCCGGGACTCAC 241
Query 778 ACAAGTTGTTCCAGAGAAGAAAACATGGCATGTTGATGATCTAACTGATTTTGAGCTAAA 837
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TCAAGTTGTTCCAGAGAAGGAAACATGGCATGTTGATGATCTAACTGATTTTGAGCTAAA 301
Query 838 GAAACAGTATCGAGAAGCAATCGATGAATGTCCAATTTGCTTAGAAGAATATGAGATTGA 897
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GAAACAGTATCGAGAAGCCATCGATGAATGTCCAATTTGCTTAGAAGAATATGAGATTGA 361
Query 898 TAACCCGAAATTGCTCACTAAATGTGGCCATGACTTTC-ATCTCGCTTGCATTCTTGCAT 956
|||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||
Sbjct 362 GAACCCGAAATTGCTCACTAAATGTGGCCATGA-TTTCCATCTCGCGTGCATTCTTGAAT 420
Query 957 GGATGGAAAGAAGCGAGGCGTGTCCAGTTTGCGATAAGGAATTAGTGCTCACTGAATCAT 1016
|||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||||
Sbjct 421 GGATGGAAAGAAGCGAAGCGTGTCCAGTTTGCGACAAGGAAATAGCAATCACTGAATCGC 480
Query 1017 AATCGTGAACAAGAAACCAATAGCTCGGA 1045
|||||| ||||||||||| ||||||||||
Sbjct 481 AATCGTAAACAAGAAACCGATAGCTCGGA 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49636037934
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5