BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23460.1
Length=2962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492527 jgi|Araly1|492527|fgenesh2_kg.7__1960__AT4G23460.1 4558 0.0
Ahg489969 jgi|Araly1|489969|fgenesh2_kg.6__3103__AT4G11380.1 3049 0.0
> Ahg492527 jgi|Araly1|492527|fgenesh2_kg.7__1960__AT4G23460.1
Length=2899
Score = 4558 bits (2468), Expect = 0.0
Identities = 2683/2787 (96%), Gaps = 14/2787 (1%)
Strand=Plus/Plus
Query 16 GGAGGAGAAGAAGTGTGGAGGTTGAAGAAGGGAGAAAATGAGCGGTCATGATTCTAAATA 75
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1 GGAGGAGAAGAAGTGTGGAGGTTGAAGAAGGGAG-AAATGAGCGGTCATGATTCGAAATA 59
Query 76 TTTTTCGACTACGAAGAAGGGAGAGATCCCTGAGCTCAAGGAAGAGCTGAATTCACAGTA 135
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 60 CTTTTCGACTACGAAGAAGGGAGAGATCCCTGAGCTTAAAGAAGAGCTGAATTCACAGTA 119
Query 136 CAAGGATAAGAGGAAAGATGCTGTTAAGAAGGTTATTGCGGCAATGACTGTTGGAAAGGA 195
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TAAGGATAAGAGGAAAGATGCTGTTAAGAAGGTTATTGCGGCAATGACTGTTGGAAAGGA 179
Query 196 TGTTTCATCACTTTTCACTGATGTAGTCAATTGCATGCAAACTGAGAATCTGGAGTTGAA 255
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 TGTTTCATCACTTTTCACTGATGTAGTCAATTGCATGCAAACGGAGAATCTGGAGTTGAA 239
Query 256 GAAGCTTGTTTACTTGTATCTGATAAACTATGCAAAAAGCCAGCCAGATCTTGCTATCCT 315
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 GAAGCTTGTTTATTTGTATCTGATAAACTATGCCAAAAGCCAGCCAGATCTTGCTATCCT 299
Query 316 CGCTGTAAATACTTTTGTTAAGGATTCACAAGACCCAAATCCATTGATCCGGGCTTTGGC 375
||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGCAGTTAATACTTTTGTAAAGGATTCACAAGACCCAAATCCATTGATCCGGGCTTTGGC 359
Query 376 TGTGCGAACGATGGGCTGTATTCGTGTTGATAAGATTACAGAATATTTGTGTGATCCTCT 435
||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 360 TGTGCGAACAATGGGCTGTATTCGTGTTGACAAGATCACAGAATATCTGTGTGATCCTCT 419
Query 436 TCAGAAATGCCTAAAGGATGATGATCCATATGTCCGCAAGACAGCAGCTATTTGTGTTGC 495
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 TCAGAAATGCCTAAAGGATGATGACCCATATGTCCGCAAGACAGCAGCTATTTGTGTTGC 479
Query 496 TAAACTGTTTGACATAAATGCTGAATTAGTTGAGGATAGGGGGTTCCTGGAAGCCTTAAA 555
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 TAAATTGTTTGACATAAATGCTGAATTAGTTGAGGATAGGGGGTTCCTTGAAGCCTTAAA 539
Query 556 GGATTTAATATCAGACAATAATCCAATGGTTGTGGCAAATGCTGTAGCTGCCCTTGCAGA 615
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 540 GGATTTAATATCAGACAATAATCCAATGGTTGTTGCAAATGCTGTAGCAGCCCTTGCAGA 599
Query 616 GATCCAAGAGAATAGTACTAGTCCCATATTTGAAATCAATAGTACCATCCTCACAAAGCT 675
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 GATACAAGAGAATAGTACTAGTCCCATATTTGAAATCAATAGTACCACCCTCACAAAGCT 659
Query 676 CCTTACAGCTTTGAATGAATGTACTGAATGGGGTCAAGTTTTTATATTAGATGCTTTGTC 735
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 CCTTACAGCTTTGAATGAATGTACTGAATGGGGTCAAGTATTTATATTAGATGCTTTGTC 719
Query 736 GAGGTATAAGGCATCTGATCCTCGTGAAGCTGAAAATATTGTTGAGAGAGTCACTCCAAG 795
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 GAGGTATAAGGCAGCTGATCCTCGTGAAGCTGAGAATATTGTTGAGAGAGTCACTCCAAG 779
Query 796 GTTGCAACATGCCAACTGTGCTGTTGTGCTTTCAGCTGTTAAGATGATCCTTCAGCAGAT 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTTGCAACATGCCAACTGTGCTGTTGTGCTTTCAGCTGTTAAGATGATCCTTCAGCAGAT 839
Query 856 GGAGCTTATTACTAGCACAGATGTGATTCGAAATCTTTGCAAGAAGATGGCTCCTCCCCT 915
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGAGCTTATTACTAGTACAGATGTGATTCGAAATCTTTGCAAGAAGATGGCTCCTCCCCT 899
Query 916 AGTTACATTGCTTTCTGCAGAACCTGAGATACAGTATGTTGCACTTCGTAACATTAACCT 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGTTACATTGCTTTCTGCAGAACCTGAGATACAGTATGTTGCACTTCGTAACATTAACCT 959
Query 976 TATTGTCCAAAAGAGACCCACTATTCTTGCCCATGAAATCAAGGTGTTCTTCTGCAAGTA 1035
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TATTGTCCAAAAGAGACCAACTATTCTTGCCCATGAAATCAAGGTGTTCTTCTGCAAGTA 1019
Query 1036 TAATGATCCGATATATGTTAAGATGGAGAAGTTAGAGATTATGATAAAACTTGCTTCTGA 1095
|||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 TAATGATCCGATTTATGTCAAGATGGAGAAGTTAGAAATTATGATAAAACTTGCTTCTGA 1079
Query 1096 CAGAAACATAGACCAGGTTCTTCTGGAGTTCAAAGAATATGCCACGGAAGTAGATGTTGA 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1080 CAGAAACATAGACCAGGTTCTTCTGGAGTTCAAAGAATATGCCACGGAAGTAGATGTAGA 1139
Query 1156 TTTTGTTCGGAAGGCTGTTCGTGCTATAGGCCGATGTGCCATCAAACTAGAAAGAGCAGC 1215
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1140 TTTTGTTCGGAAGGCTGTTCGTGCAATAGGCCGATGTGCCATCAAACTAGAAAGAGCAGC 1199
Query 1216 TGAACGGTGCATCAGTGTTTTACTTGAGCTGATCAAGATCAAAGTAAACTACGTTGTGCA 1275
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1200 TGAACGTTGCATCAGTGTTTTACTTGAGCTGATCAAGATCAAAGTAAACTATGTTGTTCA 1259
Query 1276 GGAGGCCATTATAGTCATCAAAGATATCTTTAGAAGATATCCAAATACGTATGAGTCCAT 1335
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 GGAGGCCATTATAGTCATCAAAGATATCTTTAGAAGATATCCAAACACGTATGAGTCCAT 1319
Query 1336 AATCGCAACACTCTGTGAGAGTCTAGACACATTGGATGAACCAGAAGCTAAGGCATCTAT 1395
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AATTGCAACACTCTGTGAGAGTCTAGACACATTGGATGAACCAGAAGCTAAGGCATCTAT 1379
Query 1396 GATTTGGATCATTGGTGAATATGCTGAAAGAATCGACAATGCGGATGAACTTCTTGAAAG 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GATTTGGATCATTGGTGAATATGCTGAAAGAATCGACAATGCGGATGAACTTCTTGAAAG 1439
Query 1456 CTTCCTGGAGAATTTCCCTGAGGAACCAGCACAAGTCCAACTGCAGCTTCTTACAGCTAC 1515
|||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1440 CTTCTTGGAGAATTTTCCTGAGGAACCAGCACAAGTCCAGCTGCAGCTTCTTACAGCTAC 1499
Query 1516 AGTCAAACTATTTCTGAAGAAGCCAACTGAAGGCCCACAACAAATGATTCAGGTTGTCTT 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AGTCAAACTATTTCTGAAGAAGCCAACTGAAGGCCCACAACAAATGATTCAGGTTGTCTT 1559
Query 1576 GAATAATGCTACTGTTGAAACAGATAATCCTGATCTCAGGGATCGTGCATACATCTACTG 1635
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GAATAATGCTACTGTTGAGACAGATAATCCTGATCTCAGGGATCGTGCATACATCTACTG 1619
Query 1636 GCGTCTTCTATCGACTGATCCTGAGGCGGCCAAGGATGTTGTTTTAGCTGAAAAGCCTGT 1695
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GCGTCTTCTATCTACTGATCCCGAGGCGGCCAAGGATGTTGTTTTAGCTGAAAAGCCTGT 1679
Query 1696 GATTACTGATGACTCAAACCAACTTGATCCGTCGCTCCTGGATGAGCTACTTGCAAATAT 1755
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 GATTACTGACGACTCAAACCAACTTGATCCGTCGCTCCTGGATGAGCTACTTGCAAATAT 1739
Query 1756 ATCCACCTTGTCCTCTGTGTATCACAAGCCGCCAGAGGCTTTTGTAACCCGCTTGAAAAC 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ATCCACCTTGTCCTCTGTGTATCACAAGCCGCCAGAGGCTTTTGTAACCCGCTTGAAAAC 1799
Query 1816 CACAGTTCAGAAAACGGAGGATGAGGATTATGTAGAAGGGAGCGAAACAGGATATCCC-G 1874
|||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| |
Sbjct 1800 CACAGTTCAGAAAACGGAAGATGAGGACTATGTAGAAGGGAGCGAAACAGGATA-CCCTG 1858
Query 1875 AGGCATCTGGTAATCCGGTTGATGGTGCAGCTTCCCC-GTCAGCTACCACAGGCTATGTC 1933
|| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1859 AGACATCTGGTAATCCGGTTGATGGTGCAGCTTCCCCTG-CAGCTACCACAGGCTATGTC 1917
Query 1934 ACAAAG-CTAGCTGCTGCCCCAGCTCCTGTACCCGATCTGCTAGGTGACCTAATGGGGTC 1992
||||| | ||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1918 CCAAAGTC-AGCTGCTGCCCCAGCTCCTGTGCCCGATCTGCTTGGTGACCTAATGGGGTC 1976
Query 1993 AGATAATGCTGCAATCGTCCCTGTAGATGAACCCACAACTCCGTCAGGTCGTCCACTGCC 2052
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1977 AGATAATGCTGCAATCGTCCCTGTAGATGAACCCACAACTCCGTCAGGTCGCCCGCTTCC 2036
Query 2053 TGTTGTCCTACCAGCATCAAAGGGTCAAGGTCTGCAGATTAGCGCTCAATTAACCCGACA 2112
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2037 TGTTGTCCTGCCAGCATCAAAAGGTCAAGGTCTGCAGATTAGCGCTCAATTAACCCGACA 2096
Query 2113 AGATGGTCAAGTATTCTACAGTATGCTCCTCGAGAACAACTCGCAGTCACTTCTTGATGG 2172
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 2097 AGATGGTCAAGTATTCTACACTATGCTCCTCGAAAACAACTCGCAGTCACTTCTTGATGG 2156
Query 2173 CTTCATGATTCAGTTCAACAAAAACTCATTCGGCCTTGCAGCTGTCGGATCACTTCAGGT 2232
||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 2157 CTTCATGATTCAGTTCAACAAAAACTCATTCGGCCTTGCAGCTGTCGGACCTCTCCAGGT 2216
Query 2233 TCCGCCTCTGCAACCCGGAGCATCTGCCAGGACAATGATGCCAATGGTATTGTCCCAAAA 2292
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 2217 TCCGCCTCTGCAACCCGGAGCATCTGCCAGGACAATGTTGCCAATGGTATTGTCCCAGAA 2276
Query 2293 CATGTCTACTGG-CTCCACCAGCTCGGTATTGCAAGTTGCCGTCAAAAACAACCAGCAGC 2351
||||||| |||| | |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2277 CATGTCTGCTGGGC-CCACCAGCTCGGTATTGCAAGTTGCCGTAAAAAACAACCAGCAGC 2335
Query 2352 CTGTCTGGTACTTCGAGGATAAGATTGTACTTAACGCTCTTTTCTCAGAAGATGGTCGGA 2411
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||
Sbjct 2336 CTGTCTGGTACTTCGAGGATAAGATTGTACTTCATGCTCTTTTCTCAGAAGATGGTAGGA 2395
Query 2412 TGGAGCGCGGAACCTTCCTCGAGACATGGAAATCGTTACCGGATTCAAACGAGGTGCAGA 2471
|||| ||||| ||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 2396 TGGAACGCGGGACCTTCCTCGAGACATGGAGATCGTTACCGGATTCAAACGAAGTCCAGA 2455
Query 2472 AAGAATTCCCCGGGATAACCATCACGAGCGTGGAGTCAACACTTGATTTACTCGCCGCAT 2531
| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2456 AGGAATTCCCCGGGATAACCATCACGAGCGTGGAGTCAACACTTGATTTGCTTGCCGCAT 2515
Query 2532 CAAACATGTTCTTCATAGCAAAGCGTAAGAATGGGAACCAAGACGTCCTCTATCTTTCGG 2591
|||||||||||||||||||||||||||| || || ||||||||||| || |||||||| |
Sbjct 2516 CAAACATGTTCTTCATAGCAAAGCGTAAAAACGGAAACCAAGACGTGCTGTATCTTTCAG 2575
Query 2592 CCAAGGTACCAAGAGGCATACCGTTCCTGATCGAACTAACGGCCATAGTGGGTCAACCTG 2651
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 2576 CCAAGGTACCAAGAGGCATACCGTTCTTGATCGAACTAACGGCCATGGTGGGTCAACCTG 2635
Query 2652 GTCTGAAATGTGCAGTCAAGACTCCAACCCCTGAGATCGCTCCTCTCTTCTTTGAAGCAG 2711
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 2636 GTCTGAAATGTGCAGTCAAGACTCCAACTCCTGAGATCGCTCCTCTCTTCTTTGAAGCCG 2695
Query 2712 TCGAAATTCTCTTCAAGGCTTGA--TTT-GATTTTACACTGCCCTAA-GGTAAGCAAATT 2767
|||||||||||||||| |||||| ||| |||||||||||| | || ||||| ||||||
Sbjct 2696 TCGAAATTCTCTTCAAAGCTTGAGATTTTGATTTTACACTGTCAAAAAGGTAA-CAAATT 2754
Query 2768 TCTTCTTTTAGTGTATGTAGTAAGTGA 2794
| |||||||||||||||||||||||||
Sbjct 2755 TTTTCTTTTAGTGTATGTAGTAAGTGA 2781
> Ahg489969 jgi|Araly1|489969|fgenesh2_kg.6__3103__AT4G11380.1
Length=3190
Score = 3049 bits (1651), Expect = 0.0
Identities = 2375/2723 (87%), Gaps = 55/2723 (2%)
Strand=Plus/Plus
Query 46 GGAGAAAATGAGCGGTCATGATTCTAAATATTTTTCGACTACGAAGAAGGGAGAGATCCC 105
|||| ||||||| ||||| ||||| ||||| || ||||| ||||||||||||||||||||
Sbjct 34 GGAG-AAATGAGTGGTCACGATTCGAAATACTTCTCGACAACGAAGAAGGGAGAGATCCC 92
Query 106 TGAGCTCAAGGAAGAGCTGAATTCACAGTACAAGGATAAGAGGAAAGATGCTGTTAAGAA 165
|||||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||
Sbjct 93 TGAGCTCAAGGAAGAGCTTAATTCCCAGTATAAGGATAAGAGAAAAGATGCAGTTAAGAA 152
Query 166 GGTTATTGCGGCAATGACTGTTGGAAAGGATGTTTCATCACTTTTCACTGATGTAGTCAA 225
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 153 GGTTATTGCGGCGATGACTGTGGGGAAGGATGTTTCATCACTTTTCACTGATGTAGTCAA 212
Query 226 TTGCATGCAAACTGAGAATCTGGAGTTGAAGAAGCTTGTTTACTTGTATCTGATAAACTA 285
||| |||||||| || ||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 213 TTGTATGCAAACGGAAAATTTGGAGTTGAAGAAGCTTGTTTACTTGTATCTCATAAATTA 272
Query 286 TGCAAAAAGCCAGCCAGATCTTGCTATCCTCGCTGTAAATACTTTTGTTAAGGATTCACA 345
||| ||||| ||||||||||||||||| || || |||||||||||||| |||||||||||
Sbjct 273 TGCGAAAAGTCAGCCAGATCTTGCTATTCTTGCAGTAAATACTTTTGTAAAGGATTCACA 332
Query 346 AGACCCAAATCCATTGATCCGGGCTTTGGCTGTGCGAACGATGGGCTGTATTCGTGTTGA 405
|| ||||||||| |||| || |||||||||||||| || |||||||| |||||||||||
Sbjct 333 GGATCCAAATCCACTGATTCGAGCTTTGGCTGTGCGGACAATGGGCTGCATTCGTGTTGA 392
Query 406 TAAGATTACAGAATATTTGTGTGATCCTCTTCAGAAA-TGCCTAAAGGATGATGATCCAT 464
||| || ||||||||| | |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 393 TAAAATCACAGAATATCTATGTGATCCTCTTCA-AAAGTGCCTAAAGGATGATGATCCAT 451
Query 465 ATGTCCGCAAGACAGCAGCTATTTGTGTTGCTAAACTGTTTGACATAAATGCTGAATTAG 524
||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||| |
Sbjct 452 ATGTCCGGAAGACAGCAGCTATTTGCGTTGCTAAGCTTTTTGACATAAATGCTGAATTGG 511
Query 525 TTGAGGATAGGGGGTTCCTGGAAGCCTT-AAAGGATTTAATATCAGACAATAATCCAATG 583
| ||||||||||| ||||| |||||||| |||| |||| ||||||||||| ||||| |||
Sbjct 512 TGGAGGATAGGGGTTTCCTTGAAGCCTTGAAAG-ATTTGATATCAGACAACAATCCGATG 570
Query 584 GTTGTGGCAAATGCTGTAGCTGCCCTTGCAGAGATCCAAGAGAATAGTACTAGTCCCATA 643
||||| || ||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 571 GTTGTTGCCAATGCTGTAGCAGCCCTTGCAGAGATTCAAGAGAATAGTACTAGCCCCATA 630
Query 644 TTTGAAATCAATAGTACCATCCTCACAAAGCTCCTTACAGCTTTGAATGAATGTACTGAA 703
||||| ||||||||||| | ||| |||||||||||||| ||| | |||||||| |||||
Sbjct 631 TTTGAGATCAATAGTACAACCCTTACAAAGCTCCTTACCGCTCTAAATGAATGCACTGAG 690
Query 704 TGGGGTCAAGTTTTTATATTAGATGCTTTGTCGAGGTATAAGGCATCTGATCCTCGTGAA 763
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||
Sbjct 691 TGGGGTCAAGTTTTTATATTAGATGCTTTATCGAGGTATAAAGCAGCTGATCCCCGTGAA 750
Query 764 GCTGAAAATATTGTTGAGAGAGTCACTCCAAGGTTGCAACATGCCAACTGTGCTGTTGTG 823
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 751 GCTGAAAATATTGTTGAGAGAGTCACACCAAGGTTACAACATGCCAACTGCGCTGTTGTG 810
Query 824 CTTTCAGCTGTTAAGATGATCCTTCAGCAGATGGAGCTTATTACTAGCACAGATGTGATT 883
|||||||||||||||||||||||||| || ||||| ||||| ||||| ||||| ||||||
Sbjct 811 CTTTCAGCTGTTAAGATGATCCTTCAACAAATGGAACTTATCACTAGTACAGACGTGATT 870
Query 884 CGAAATCTTTGCAAGAAGATGGCTCCTCCCCTAGTTACATTGCTTTCTGCAGAACCTGAG 943
|||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 871 CGAAATCTTTGCAAGAAGATGGCTCCACCCCTTGTTACATTGCTTTCTGCCGAACCTGAG 930
Query 944 ATACAGTATGTTGCACTTCGTAACATTAACCTTATTGTCCAAAAGA-GACCCACTATTCT 1002
||||| ||||||||||||||||||||||| |||||||| ||||| | |||||||||| ||
Sbjct 931 ATACAATATGTTGCACTTCGTAACATTAATCTTATTGTGCAAAA-ACGACCCACTATCCT 989
Query 1003 TGCCCATGAAATCAAGGTGTTCTTCTGCAAGTATAATGATCCGATATATGTTAAGATGGA 1062
|||||||||||| ||||| ||||||||||||||||| || ||||| ||||||||||||||
Sbjct 990 TGCCCATGAAATTAAGGTTTTCTTCTGCAAGTATAACGACCCGATTTATGTTAAGATGGA 1049
Query 1063 GAAGTTAGAGATTATGATAAAACTTGCTTCTGACAGAAACATAGACCAGGTTCTTCTGGA 1122
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1050 GAAGTTGGAGATTATGATTAAACTTGCCTCTGACAGAAACATAGACCAGGTTCTTCTTGA 1109
Query 1123 GTTCAAAGAATATGCCACGGAAGTAGATGTTGATTTTGTTCGGAAGGCTGTTCGTGCTAT 1182
|||||||| ||||||||||||||||| |||||||||||| | |||||||||||||| ||
Sbjct 1110 ATTCAAAGAGTATGCCACGGAAGTAGACGTTGATTTTGTTAGAAAGGCTGTTCGTGCCAT 1169
Query 1183 AGGCCGATGTGCCATCAAACTAGAAAGAGCAGCTGAACGGTGCATCAGTGTTTTACTTGA 1242
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1170 AGGCCGATGTGCTATCAAACTAGAGAGAGCAGCTGAACGGTGCATCAGTGTTTTGCTCGA 1229
Query 1243 GCTGATCAAGATCAAAGTAAACTACGTTGTGCAGGAGGCCATTATAGTCATCAAAGATAT 1302
| ||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||
Sbjct 1230 GTTGATCAAGATCAAAGTAAATTATGTTGTCCAGGAGGCCATTATTGTCATAAAAGATAT 1289
Query 1303 CTTTAGAAGATATCCAAATACGTATGAGTCCATAATCGCAACACTCTGTGAGAGTCTAGA 1362
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1290 CTTCAGAAGATATCCAAACACGTATGAGTCCATAATTGCAACACTCTGTGAGAGTTTAGA 1349
Query 1363 CACATTGGATGAACCAGAAGCTAAGGCATCTATGATTTGGATCATTGGTGAATATGCTGA 1422
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1350 CACTTTGGATGAACCAGAAGCCAAGGCATCTATGATATGGATCATTGGTGAATATGCTGA 1409
Query 1423 AAGAATCGACAATGCGGATGAACTTCTTGAAAGCTTCCTGGAGAATTTCCCTGAGGAACC 1482
|||||| |||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 1410 AAGAATTGACAATGCGGATGAGCTTCTTGAAAGCTTCCTGGAGAGTTTTCCTGAGGAACC 1469
Query 1483 AGCACAAGTCCAACTGCAGCTTCTTACAGCTACAGTCAAACTATTTCTGAAGAAGCCAAC 1542
|||||| ||||| |||||||||| || ||||| || || ||||| ||||||||||||||
Sbjct 1470 AGCACAGGTCCAGTTGCAGCTTCTAACTGCTACTGTTAAGCTATTCCTGAAGAAGCCAAC 1529
Query 1543 TGAAGGCCCACAACAAATGATTCAGGTTGTCTTGAATAATGCTACTGTTGAAACAGATAA 1602
||||||||| ||||||||||||||||||||||||||||| |||||||| || || |||||
Sbjct 1530 TGAAGGCCCTCAACAAATGATTCAGGTTGTCTTGAATAACGCTACTGTGGAGACGGATAA 1589
Query 1603 TCCTGATCTCAGGGATCGTGCATACATCTACTGGCGTCTTCTATCGACTGATCCTGAGGC 1662
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 1590 TCCTGATCTCAGAGATCGTGCATACATATACTGGCGTCTTCTATCCACTGATCCGGAGGC 1649
Query 1663 GGCCAAGGATGTTGTTTTAGCTGAAAAGCCTGTGATTACTGATGACTCAAACCAACTTGA 1722
|| || ||||||||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 1650 CGCTAAAGATGTTGTTTTAGCTGAAAAGCCCGTGATTACTGACGACTCAAACCAGCTAGA 1709
Query 1723 TCCGTCGCTCCTGGATGAGCTACTTGCAAATATATCCACCTTGTCCTCTGTGTATCACAA 1782
|| || || || |||||||| ||| ||||||| || ||||||||||||||||| |||||
Sbjct 1710 CCCATCACTTCTTGATGAGCTGCTTACAAATATTTCAACCTTGTCCTCTGTGTACCACAA 1769
Query 1783 GCCGCCAGAGGCTTTTGTAACCCGCTTGAAAACCACAGTTCAGAAAACGGAGGATGAGGA 1842
|| ||||| |||||||| ||||||||||||||||||||||||||||| || || |||||
Sbjct 1770 ACCCCCAGAAGCTTTTGTTACCCGCTTGAAAACCACAGTTCAGAAAACAGAAGACGAGGA 1829
Query 1843 -TTATGTAGAAGGGAGCGAAACAGGATATCCCGAGGCATCTGGTAATCCGGTTGATGGTG 1901
|| || ||||| |||||| ||||||| | | | ||| |||||||||||||| |||
Sbjct 1830 CTT-TGCGGAAGGAAGCGAAGCAGGATA-CTC-A----TCTAGTAATCCGGTTGATAGTG 1882
Query 1902 CAGCTTCCCCGTC-AGCTACCACAGGCTA-TGTCACAAAGC-T-----A-G-CT----GC 1947
|||||||||| || | | |||||||| || | || || ||| | | | | ||
Sbjct 1883 CAGCTTCCCC-TCCATCCACCACAGG-TAATATCCCACAGCCTGCCGGAAGACAACCAGC 1940
Query 1948 TGC--C---CC-AGCTCCTGTACCCGATCTGCTAGGTGACCTAATGGGGTCAGATAATGC 2001
|| | || |||||||||||| ||||||||||||||||| ||||| | ||||||||
Sbjct 1941 AGCAACGGTCCCAGCTCCTGTACCTGATCTGCTAGGTGACCTGATGGGATTGGATAATGC 2000
Query 2002 TGCAATCGTCCCTGTAGATGAACCCACAACTCCGTCAGGTCGTCCACTGCCTGTTGTCCT 2061
|| || ||||| || |||||||||| |||||| || |||| ||| |||| |||||| |
Sbjct 2001 CGCTATTGTCCCGGTTGATGAACCCATAACTCCATCTGGTCCTCCTTTGCCGGTTGTCGT 2060
Query 2062 ACCAGCATCAAAG-GGTCAAGGTCTGCAGATTAGCGCTCAATTAACCCGACAAGATGGTC 2120
||||| |||| | ||||||||||||||||| |||||||||||| ||||| ||||||| |
Sbjct 2061 GCCAGCTTCAA-GTGGTCAAGGTCTGCAGATAAGCGCTCAATTATCCCGAAAAGATGGAC 2119
Query 2121 AAGTATTCTACAGTATGCTCCTCGAGAACAACTCGCAGTCACTTCTTGATGGCTTCATGA 2180
|||||||||||||||||||| ||||||| ||||||||| | | |||||||| |||||||
Sbjct 2120 AAGTATTCTACAGTATGCTCTTCGAGAATAACTCGCAGACGGTACTTGATGGTTTCATGA 2179
Query 2181 TTCAGTTCAACAAAAACTCATTCGGCCTTGCAGCTG-TCGGATCACTTCAGGTTCCGCCT 2239
||||||||||||| ||| |||||||||||||||||| | ||| | |||||| ||||||||
Sbjct 2180 TTCAGTTCAACAAGAACACATTCGGCCTTGCAGCTGCT-GGACCTCTTCAGATTCCGCCT 2238
Query 2240 CTGCAACCCGGAGCATCTGCCAGGACAATGATGCCAATGGTATTGTCCCAAAACATGTCT 2299
||||||| ||| | ||||||||||||||| | || ||||| |||| ||| |||||||||
Sbjct 2239 TTGCAACCTGGAACGTCTGCCAGGACAATGCTACCTATGGTCTTGTTCCAGAACATGTCT 2298
Query 2300 ACTGGCTCCACCA-GCTCGGTATTGCAAGTTGCCGTCAAAAACAACCAGCAGCCTGTCTG 2358
|||| || ||| ||||| |||| ||||| || ||||||||||| ||||||||||| ||
Sbjct 2299 GCTGGG-CCTCCAAGCTCGCTATTACAAGTCGCTGTCAAAAACAATCAGCAGCCTGTTTG 2357
Query 2359 GTACTTCG-AGGATAAGATTGTACTTAACGCTCTTTTCTCAGAAGATGGTCGGATGGAGC 2417
||||||| || |||||||| ||||| | ||||||||| ||||||||| | ||||| |
Sbjct 2358 GTACTTCACAG-ATAAGATTATACTTCATGCTCTTTTCGGTGAAGATGGTAGAATGGAAC 2416
Query 2418 GCGGAACCTTCCTCGAGACATGGAAATCGTTACCGGATTCAAACGAGGTGCAGAAAGAAT 2477
| ||||||||||| |||||||||| ||||||||||| || || || || ||||||||||
Sbjct 2417 GTGGAACCTTCCTTGAGACATGGAGGTCGTTACCGGACTCGAATGAAGTCCAGAAAGAAT 2476
Query 2478 TCCCCGGGATAACCATCACGAGCGTGGAGTCAAC-ACTTGATTTACTCGCCGCAT-CAAA 2535
|||||||||| |||||||| ||||| || || || | ||||||| ||| | |||| |||
Sbjct 2477 TCCCCGGGATCACCATCACAAGCGTTGAATCGACTA-TTGATTTGCTCACAGCATTCAA- 2534
Query 2536 CATGTTCTTCATAGCAAAGCGTAAGAATGGGAACCAAGACGTCCTCTATCTT-TCGGCCA 2594
|||||||||||||||||| || ||||| |||||||||||||| |||| ||| || || |
Sbjct 2535 CATGTTCTTCATAGCAAAACGCAAGAACGGGAACCAAGACGTGATCTA-CTTATCAGCAA 2593
Query 2595 AGG-TACCAAGAGGCATACCGTTCCTGATCGAACTAACGGCCATAGTGGGTCAACCTGGT 2653
| | | ||| ||| | ||||| ||||||| || || || || ||||| ||||| |||
Sbjct 2594 AAGAT-CCACGAGATGTTCCGTTTTTGATCGAGCTCACTGCAATGGTGGGCCAACCAGGT 2652
Query 2654 CTGAAATGTGCAGTCAAGACTCCAAC-CCCTGAGATCGCTCCTCTCTTCTTTGAAGCAGT 2712
|| ||||| ||||| || ||||| || ||| ||||| || ||| ||||||| ||||| |
Sbjct 2653 CTCAAATGCGCAGTGAAAACTCCCACTCCC-GAGATTGCACCTGTCTTCTTCGAAGCTTT 2711
Query 2713 CGAAATTCTCTTCAAGGCTTGAT 2735
|| ||||||||||||||||||
Sbjct 2712 GGAGCTTCTCTTCAAGGCTTGAT 2734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111832959320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5