BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23470.1
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492525 jgi|Araly1|492525|fgenesh2_kg.7__1958__AT4G23470.1 1676 0.0
> Ahg492525 jgi|Araly1|492525|fgenesh2_kg.7__1958__AT4G23470.1
Length=1246
Score = 1676 bits (907), Expect = 0.0
Identities = 1177/1295 (91%), Gaps = 67/1295 (5%)
Strand=Plus/Plus
Query 1 AACGCCAGTTGCCATCCAGGGGAGGGGAGAAGAAGAATTTGTATTCTCAAGTTGTC-GAT 59
||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 1 AACGCCAGTTGCCATCCAGGGGAGGGGAGAAGAAGAATTTGTAATCTCAAGTTGACGGAT 60
Query 60 AT-GAGAGAGATGAAGTCAGAAACACGTTTGTGAGAGAACAGCTTTTAGATGTGATTGTG 118
| ||||||||||||||||||||||||||||| | ||| | || ||
Sbjct 61 -TCGAGAGAGATGAAGTCAGAAACACGTTTGT---------G-----AGA---G-TT-TG 100
Query 119 GATCAGATTCTCAAAGAC-TTTTCGCGAAGAGTCTCTGATCCTTAAATCGCTTCTCTCTC 177
|||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||
Sbjct 101 GATCAGATTCTCAAAGACTTTTTTGCGAAGAGTCTCTGATCCTT-AATCGCTTCTCTCTC 159
Query 178 GCTTGACCTCATTTCGTCGTCGAAATCAGATCCTTGTG--AAAAT---GCCGAAACAGGA 232
||||||||||| ||||||||||||||||||||| |||| ||||| ||||||||| ||
Sbjct 160 GCTTGACCTCACTTCGTCGTCGAAATCAGATCCGTGTGAAAAAATGGCGCCGAAACAAGA 219
Query 233 TATGGAGAAGATGGAGCTTCGTAAGAACTTCCGTAATGTTTGGCATACCGATCTTACCCA 292
|||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 220 TATGGAGATGATGGAGCTTCGCAAGAACTTCCGTAATGTTTGGCATACCGATCTCACCCA 279
Query 293 CAGTATCCAGAACGATACTCCTTATTGTTGCTTCGCGTTGTGGTGTGCCCCTTGTGCATC 352
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 280 CAGTATCCAGAACGATACTCCTTATTGCTGCTTCGCGTTGTGGTGTGCCCCTTGTGCATC 339
Query 353 ATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGGTACGTCTGCTGTGCCGG 412
||||||||||||||||||||| |||||||||||||||||||||||| | ||||| |||||
Sbjct 340 ATACTTGCTTCGCAAGCGTGCACTTTACGATGATATGTCAAGGTACATATGCTGCGCCGG 399
Query 413 TTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCAC 472
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 400 TTACATGCCTTGTAGTGGTAGGTGTGGAGAAACCAAATGTCCTCAACTTTGTCTTGCTAC 459
Query 473 TGAGGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAAGATGA 532
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 460 TGAGGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCGACTCGCTTTCTTCTGCAAGATGA 519
Query 533 GTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTGGTTTCATGGTTTGCCTCAG 592
|||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 520 GTTCCAAATTCAGACGACACAATGTGACAACTGCATCATTGGTTTCATGCTTTGCCTCAA 579
Query 593 CCAAGTGGCTTGCATATTCTCCATAGTTGCATGTATTGTCGGTATGGATGAGCTTTCAGA 652
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 580 CCAAGTGGCTTGCATATTCTCCATAGTTGCATGTATTGTCGGTATTGATGAGCTTTCAGA 639
Query 653 AGCTTCTCAGATACTCACATGTTGCTCTGACATGGTGTACTGCACGGTTTGCGCATGTAT 712
|||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 640 AGCTTCTCAGTTGCTCTCATGTTGCTCTGACATTGTGTACTGCACGGTTTGCGCATGTAT 699
Query 713 GCAGACACAACACAAGATGGAAATGGACAAGAGGGACGGTAAGTTCGGGCCACAGCCAAT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GCAGACACAACACAAGATGGAAATGGACAAGAGGGACGGTAAGTTCGGGCCACAGCCAAT 759
Query 773 GGCAGTGCCTCCGGCTCAGCAAATGTCACGGTTTGATCAAGCCACCCCACCCGCAGTCGG 832
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 760 GGCAGTGCCTCCGGCTCAGCAAATGTCACGGTTTGATCAAGCCATCCCACCCGCAGTCGG 819
Query 833 TTATCCTCCACAACAAGGTTATCCACCTTCTGGTTATCCTCAACACCCTCCACAAGGTTA 892
||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 820 TTACCCTCCACAACAAGGTTACCCGCCTTCTGGTTATCCTCAACATCCTCCACAAGGTTA 879
Query 893 TCCACCTTCTGGCTATCCTCAAAACCCTCCTCCCTCAGCTTATTCTCAATACCCTCCTGG 952
||| |||||||||||||||||| |||| ||||| ||||||||||||||||||||||| ||
Sbjct 880 TCCTCCTTCTGGCTATCCTCAACACCCCCCTCCATCAGCTTATTCTCAATACCCTCCCGG 939
Query 953 GGCTTATCCTCCTCCTCCCGCTTACCCAAAGTGATCA-CTCT-TTG-CCTGTTTTCTCTC 1009
|||||||||||||| | ||||||||||||| |||| |||| || ||||||||||||
Sbjct 940 AGCTTATCCTCCTCC-C--GCTTACCCAAAGTAATCATCTCTCTTTACCTGTTTTCTCTT 996
Query 1010 CCGATTGGAAAATTTTATTTCATCt-ttttt--tA-ATG--CTGTCTTGTTACGGGTCAA 1063
|||||||||||| | |||||||||| ||||| || || ||||||||||| |||||||
Sbjct 997 CCGATTGGAAAAATCTATTTCATCTCTTTTTAATATATATACTGTCTTGTTATGGGTCAA 1056
Query 1064 GAATTGAACGTTCGCTGATTGTTTTGAGGTCGTTGTTTGTATGAGATTTTGACCTCGCAT 1123
| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1057 GCGTTGAGCGTTCGCTGATTGTTTTGAGGTCGTTGTTTGTATGAGATGTTGACCTCACAT 1116
Query 1124 GTTGTTGTTGTTTTCTGAAACGTCCCTCTTGGACTAAGAGATTTCATGACTTTTTCCTTT 1183
|| | ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1117 -TT-T-GTTGTTTTCTGAAACGTCCCTCTTGGACTAAGAGATTTCATGA-TTT------- 1165
Query 1184 CCTTTTAAATTCTCTCTTTTTCGAAAGTACAGACTACAGAGTCCAATACAATTCACGCA- 1242
||||||||||||| ||||||||||||| | |||||||||||||||| |
Sbjct 1166 ------AAATTCTCTCTTTATCGAAAGTACAGA--A-----TCCAATACAATTCACG-AT 1211
Query 1243 CCGTATATACAGGAAAAACATTTTGTCCTGATAAA 1277
||||||||||||||||||||| |||||||||||||
Sbjct 1212 CCGTATATACAGGAAAAACATATTGTCCTGATAAA 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48721087926
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5