BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23490.1
Length=2027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492523 jgi|Araly1|492523|fgenesh2_kg.7__1956__AT4G23490.1 3057 0.0
Ahg489967 jgi|Araly1|489967|fgenesh2_kg.6__3101__AT4G11350.1 1061 0.0
> Ahg492523 jgi|Araly1|492523|fgenesh2_kg.7__1956__AT4G23490.1
Length=1996
Score = 3057 bits (1655), Expect = 0.0
Identities = 1913/2030 (94%), Gaps = 47/2030 (2%)
Strand=Plus/Plus
Query 2 TCTCTCTCTCTGCCCAAAGAGAAGCCC-----aaaaaaaaaaaaaaaCTTTTGTCTTTCC 56
||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||||
Sbjct 1 TCTCTCTCTCTGCCCAAAGCGAA-CCCAAAAAAAAAAAAAAAAAAAAC-TTTGTCTTTCC 58
Query 57 CTTAATTTCTCTAATTTTCCCTCGATTTCTCTGGCATCAACAGTCTCA-TTCTCATTGAT 115
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 59 CTTAATCTCTCTCATTTTCCCTCGATTTCTCTGGCATCAACAGTCTCATTTCTCATTGAT 118
Query 116 CTTTCTTTTTTGTAGCGAGAAAGATCCAtttttttCGGTTCGTTCTCTTCTGGGTTACGA 175
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CTTTCTTTATTGTTGCAAGAAAGATCCATTTTTTTCGGTTCGTTCTCTTCTGGGTTACGA 178
Query 176 ATCAAAGAGCTACACAGACACAGACACACACTGTTTCCTGTTTCTCCCCGGATTGCAAAC 235
||| ||||||| |||||| |||||||||||||||||||||||| |||| |||||
Sbjct 179 ATC-AAGAGCT------ACACAG--ACACACTGTTTCCTGTTTCTCCCCTGATTTCAAAC 229
Query 236 AGAACTAGGGTTTGTTTTCACAAATTTTGGATCttttttttGAAGAAAAGAACAAAATTT 295
||||||||||||||||||||||||||||||||| |||| |||
Sbjct 230 AGAACTAGGGTTTGTTTTCACAAATTTTGGATC----TTTT----------------TTT 269
Query 296 GGATGAAAGGAAACCAGAAAGACTCGTCGGAAAAACCGATATGGGATCGGAGCTCATCAA 355
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 270 GGATGAAAGGAAACCAGAAAGATTCGTCGGAAAAACCGATATGGGATCGGAGCTCATCAA 329
Query 356 GTACATCTATACCCGGAATGTGGTCTTTAACCCGACCCGGTCCAAAACTTATGGTTTGGC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 GTACATCTATACCCGGAATGTGGTCTTTAACCCGACCCGGTCCAAAACTTATGGTTTGGC 389
Query 416 TTATCTGTTTCATTGTCTTCACTTACATTATCTACATGCTTAAGCTTGTCTCTACCTCAC 475
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 TAATCTGCTTCATTGTCTTCACTTACATTATCTACATGCTTAAGCTTGTCTCTACCTCAC 449
Query 476 GCTCCTGTGACGATTCCACTTCTTTCACCACCGTCTCTGCTCTCTCCACAAACGTCTCTT 535
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 450 GCTCCTGTGACGATTCCACTTCTCTCACCACCGTCTCTGCTCTCTCCACAAACGTCTCCT 509
Query 536 CAAATGTCTCGTCTTTATCCACCTCCTTAGCTTCACGGCGGCGTA-ATTGGGAGGAGGAA 594
||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||
Sbjct 510 CAAATGTCTCGTCTTTATCCACCTCCTTAGCTTCACGGCGGAG-AGAATGGGAGGAGGAA 568
Query 595 GAAGAAGACACGGTGGTGGATAAGCTGACGGATCTTAACCACGTGGTGTTTGGGATCGCT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 GAAGAAGACACGGTGGTGGATAAGCTGACGGATCTTAACCACGTGGTGTTTGGGATCGCT 628
Query 655 GCGTCGTCTAAGCTATGGAAACAGAGGAAAGAGTATATCAAGATCTGGTATAAACCAAAA 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 GCGTCGTCTAAGCTATGGAAACAGAGGAAAGAGTATATCAAGATCTGGTATAAACCAAAG 688
Query 715 CGCATGCGTGGCTACGTTTGGTTAGATAAAGAGGTTAAAAAGAGTC-TTAGTGATGATGA 773
| ||||||||||||||||||||||||||||||||| | |||||| | ||| |||||| ||
Sbjct 689 CACATGCGTGGCTACGTTTGGTTAGATAAAGAGGTGAGAAAGAG-CGTTAATGATGACGA 747
Query 774 TGACGA--A-AAGCTTCTTCCTCCGGTGAAAATCTCCGGTGGAACTGCTTCGTTTCCTTA 830
||||| | ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 748 CGACGACGAGAAGCTGCTTCCGCCGGTGAAAATCTCCGGCGGAACTGCTTCTTTTCCTTA 807
Query 831 TACTAACAAACAAGGACAACGCTCTGCGTTACGGATCTCGAGGATTGTTTCTGAAACGCT 890
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 808 TACTAACAAACAAGGACAACGCTCGGCGTTACGGATCTCGAGGATTGTGTCTGAAACGCT 867
Query 891 GCGTTTAGGTCCGAAGAATGTTAGGTGGTTTGTGATGGGTGATGATGATACGGTGTTTGT 950
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 868 GCGTTTAGGTCCGAAGAATGTGAGGTGGTTCGTGATGGGTGATGATGATACGGTGTTTGT 927
Query 951 TATTGATAATTTGATTAGGGTGTTGAGGAAGTATGACCATGAGCAGATGTATTACATTGG 1010
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 TACTGATAATTTGATTAGGGTGTTGAGGAAGTATGACCATGAGCAGATGTATTACATTGG 987
Query 1011 GAGCTTGTCGGAATCTCATTTACAGAACATATTTTTCTCGTATGGTATGGCTTATGGTGG 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GAGCTTGTCGGAATCTCATTTACAGAACATATTTTTCTCGTATGGTATGGCTTATGGTGG 1047
Query 1071 AGGTGGATTTGCTATAAGCTATCCATTGGCTAAAGCTTTGAGTAAGATGCAAGATCGGTG 1130
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 AGGTGGGTTTGCTATAAGTTATCCATTGGCTAAAGCTTTGAGTAAGATGCAAGATCGGTG 1107
Query 1131 TATACAGAGGTATCCTGCATTGTATGGATCAGATGATCGCATGCAAGCTTGTATGGCTGA 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 TATACAGAGGTATCCTGCATTGTATGGATCAGATGATCGCATGCAAGCTTGTATGGCTGA 1167
Query 1191 ACTTGGTGTTCCACTCACTAAAGAACTCGGATTTCACCAGTACGACGTTTACGGGAACCT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 ACTTGGTGTTCCACTCACTAAAGAACTCGGATTTCACCAGTACGACGTTTACGGGAACCT 1227
Query 1251 CTTTGGCCTTCTCGCTGCACACCCAGTAACACCGTTCGTCTCGATGCACCACCTCGACGT 1310
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1228 CTTTGGCCTCCTCGCTGCACACCCAGTAACACCGTTCGTCTCAATGCACCACCTCGACGT 1287
Query 1311 GGTGGAACCGATTTTCCCTAACATGACACGTGTCCGCGCCCTCAAGAAGATTACCGAACC 1370
|||||||||||| ||||| || |||||||||||||| || || |||||| | ||| ||||
Sbjct 1288 GGTGGAACCGATCTTCCCGAATATGACACGTGTCCGTGCTCTAAAGAAGCTAACCCAACC 1347
Query 1371 TATGAAGCTTGACTCAGCCGGGCTTCTCCAGCAGTCGATATGCTACGACAAGCACAAGAG 1430
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 TATGAAGCTCGACTCAGCCGGGCTTCTCCAGCAGTCGATATGCTACGACAAGCACAAGAG 1407
Query 1431 CTGGACCATCTCGGTCTCTTGGGGCTACGCGGTTCAGATTTTTCGCGGAATATTCTCTCC 1490
|||||| ||||| ||||| |||||||||||||| || || || |||||||| ||||||||
Sbjct 1408 CTGGACAATCTCCGTCTCCTGGGGCTACGCGGTACAAATATTCCGCGGAATTTTCTCTCC 1467
Query 1491 CCGAGAAATGGAAATGCCTTCTAGAACCTTCTTGAATTGGTACAAACGGGCGGATTACAC 1550
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1468 CCGGGAAATGGAAATGCCTTCTAGAACCTTTTTGAATTGGTACAAACGGGCGGATTACAC 1527
Query 1551 TGCTTACGCTTTCAACACTAGGCCGGTTAGCCGGAACCCGTGTCAAAAACCGTTTGTGTT 1610
|||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 1528 TGCTTACGCTTTCAACACCAGGCCGGTTAGCCGTAACCCGTGCCAAAAACCGTTTGTGTT 1587
Query 1611 TTACATGTCGAGCACGAAATTCGATCAGCAGCTGAACACGACGGTTAGCGAATACACGAT 1670
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1588 TTATATGTCGAGCACGAAATTCGACCAGCAGCTGAACACGACGGTTAGCGAATACACGAT 1647
Query 1671 ACACCGTGTTTCACATCCTTCTTGCCGATGGAAGATGACAAACCCAGCTGAGATTAATAC 1730
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1648 ACACCGTGTTTCGCATCCTTCTTGCCGATGGAAGATGACAAACCCAGCTGAGATTAACAC 1707
Query 1731 CATCGTCGTCTACAAGAAACCCGACCCTCATCTATGGGAAAGGTCACCTAGGAGGAATTG 1790
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 CATCGTCGTTTACAAGAAACCCGACCCTCATCTATGGGAAAGGTCACCTAGGAGGAATTG 1767
Query 1791 TTGCAGAGTATTACAAACAAAGAGGAATAATACGTTATGGATCAATGTTGGTGTATGTAG 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 TTGCAGAGTATTACAAACAAAGAGGAATAATACGTTATGGATCAATGTTGGTGTATGTAG 1827
Query 1851 AGCAGGTGAAGTCACTGAAGTTAAGTAATTTT-TTAATATAGTTTATTTTTGTGAAAGGG 1909
|||||||||||||||||| ||||||||||||| ||||| |||||| ||| | | ||||||
Sbjct 1828 AGCAGGTGAAGTCACTGAGGTTAAGTAATTTTCTTAATCTAGTTT-TTTGTATTAAAGGG 1886
Query 1910 AAGGAAATTAGAGtttttttAGGCTGTTTTACCGCTCTTAATTTCTTGCCACGTTATTTA 1969
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1887 AAGAAAATTAGAGTTTTTTTAGGCTGTTTTACCGTTCTTAATTTCTTGCCACGTTATTTA 1946
Query 1970 AAATTTTTATTCATTGAGATCCCGCCCTAGTTCTTCTCTCAGTATATGAT 2019
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1947 AAATTTT-ATTCATTGAGATCCCGCCCTAGTTCTTCTCTCAGTATATGAT 1995
> Ahg489967 jgi|Araly1|489967|fgenesh2_kg.6__3101__AT4G11350.1
Length=1595
Score = 1061 bits (574), Expect = 0.0
Identities = 1057/1286 (82%), Gaps = 49/1286 (4%)
Strand=Plus/Plus
Query 625 GATCTTAACCACGTGGTGTTT-GGGATCGCTGCGTCGTCTAAGCTATGGAAACAGAGGAA 683
||||| ||||| || || ||| ||||| || |||||||| |||||||||||||| |||||
Sbjct 294 GATCTAAACCATGTCGT-TTTCGGGATTGCAGCGTCGTCAAAGCTATGGAAACAAAGGAA 352
Query 684 AGAGTATATCAAGATCTGGTATAAA-CCAA-AACGCATGCGTGGCTACGTTTGGTTAGAT 741
||||||||||||||| ||||| ||| |||| || | ||| | |||||||| |||||||||
Sbjct 353 AGAGTATATCAAGATTTGGTACAAACCCAAGAA-G-ATGAGAGGCTACGTGTGGTTAGAT 410
Query 742 AAAGAGGTTAAA-A-AGAGTCTTAGTGATGATGATGACGAAAAGCTTCTTCCTCCGGTGA 799
||||||| |||| | | | || | || ||| | ||| | | || || ||||| |
Sbjct 411 AAAGAGG-TAAAGATAAAATCCGAAACCGGA-GATCAAGAACA-C--CTCCCGCCGGT-A 464
Query 800 A-AATCTCCGGTGGA-ACTG-CTTCGTTTCCTTATACTAACAAACAAGGACAACGCTCTG 856
| |||||||||| || || | | |||||||||||||||||||| |||||||| || || |
Sbjct 465 AGAATCTCCGGT-GATAC-GTCGTCGTTTCCTTATACTAACAAGCAAGGACACCGATCAG 522
Query 857 CGTTACGGATCTCGAGGATTGTTTCTGAAAC---GCTGCGT-TT-A----G-GTC--CGA 904
|| |||||||||| ||||||||||| ||||| | || || || | | ||| ||
Sbjct 523 CGATACGGATCTCAAGGATTGTTTCGGAAACGTTGATGAGTCTTGATTCTGAGTCGAAGA 582
Query 905 AGAATGTTAGGTGGTTTGTGATGGGTGATGATGATACGGTGTTTGTTATTGATAATTTGA 964
|||| || |||||||| ||||||||||||||||||||||| ||||||| |||||| | |
Sbjct 583 AGAACGTGAGGTGGTTCGTGATGGGTGATGATGATACGGTTTTTGTTACGGATAATCTAA 642
Query 965 TTAGGGTGTTGAGGAAGTATGACCATGAGCAGATGTATTACATTGGGAGCTTGTCGGAAT 1024
||||||| ||||||||||| |||||||| ||||||||||| || || |||||||||||||
Sbjct 643 TTAGGGTTTTGAGGAAGTACGACCATGAACAGATGTATTATATAGGAAGCTTGTCGGAAT 702
Query 1025 CTCATTTACAGAACATATTT-TTCTCGTATGGTATGGCTTATGGTGGAGGTGGATTTGCT 1083
||||||| ||||| || ||| ||||| ||||| ||||||||||||||||| || |||||
Sbjct 703 CTCATTTGCAGAATAT-TTTCTTCTCTTATGGAATGGCTTATGGTGGAGGAGGTTTTGCG 761
Query 1084 ATAAGCTATCCATTGGCTA-AAGCTTTGAGTAAGATGCAAGATCGGTGTA-TACAGAGGT 1141
|| || ||||| ||||| | |||||||||||||||||||||||||||| || ||||||
Sbjct 762 ATTAGTTATCCTTTGGC-AGTGGCTTTGAGTAAGATGCAAGATCGGTGTATTA-AGAGGT 819
Query 1142 ATCCTGCATTGTATGGATCAGATGATCGCATGCAAGCTTGTATGGCTGAACTTGGTGTTC 1201
|||| || |||||||| || |||||||| |||||||||||||||||||| ||||| ||||
Sbjct 820 ATCCGGCTTTGTATGGTTCTGATGATCGGATGCAAGCTTGTATGGCTGAGCTTGGAGTTC 879
Query 1202 CACTCACTAAAGA-ACTCGGATTTCACCAGTACGACGTTTACGGGAACCTCTTTGGCCTT 1260
|| | ||||| || | |||| ||||| || ||||||||| | |||||||| || |||||
Sbjct 880 CATTGACTAAGGAGA-TCGGTTTTCATCAATACGACGTTCATGGGAACCTATTCGGCCTC 938
Query 1261 CTCGCTGCACACCCAGTAACACCGTTCGTCTCGATGCACCACCTCGACGTGGTGGAACCG 1320
|| ||||| || || ||||||||||| || || |||||||| || || ||||||||||||
Sbjct 939 CTAGCTGCTCATCCGGTAACACCGTTTGTATCAATGCACCATCTTGATGTGGTGGAACCG 998
Query 1321 ATTTTCCCTAACATGACACGTGTCCGCGCCCTCAAGAAGATTACCGA-ACCTATGAAGCT 1379
||||| || |||||||| ||||| |||||| ||||||| | || | | ||| |||||| |
Sbjct 999 ATTTTTCCAAACATGACCCGTGTTCGCGCCATCAAGAA-ACTAACTACACCGATGAAGAT 1057
Query 1380 TGACTCAGCCGGGCTTCTCCAGCAGTCGATATGCTACGACAAGCACAAGAGCTGGACCAT 1439
||| || || ||||||||||| || || |||||||| |||||||| || |||||||| ||
Sbjct 1058 TGATTCGGCTGGGCTTCTCCAACAATCAATATGCTATGACAAGCATAAAAGCTGGACGAT 1117
Query 1440 CTCGGTCTCTTGGGGCTACGCGGTTC-AGATTTTTCGCGGAAT-ATTCTCTCCCCGAGAA 1497
|||||||| ||||| | ||||||| || | || || || || ||||| || || |||
Sbjct 1118 TTCGGTCTCGTGGGGATTTGCGGTTCAAG-TGTTCCGTGG-ATCCTTCTCACCACGGGAA 1175
Query 1498 ATGGAAATGCCTTCTAGAACCTTCTTGAATTGGTACAAACGGGCGGATTACACTGCTTAC 1557
|||||||||||||||||||| |||||||||||||||||| | || |||||||| || |||
Sbjct 1176 ATGGAAATGCCTTCTAGAACTTTCTTGAATTGGTACAAAAGAGCTGATTACACCGCCTAC 1235
Query 1558 GCTTTCAACACTAGGCCGGTTAGCCGGAACCCGTGTCAAAAACCGTTTGTGTTTT-ACAT 1616
|| ||||| |||||||| || || || || | || |||||||||||||| |||| ||||
Sbjct 1236 GCATTCAATACTAGGCCCGTGAGTCGCAATCATTGCCAAAAACCGTTTGT-TTTTCACAT 1294
Query 1617 GTCGAGCACGAAATTCGATCAGCAGCTGAACACGACGGTTAGCGAATACACGATACACCG 1676
||||| |||||||||| | |||| ||||||| ||||||||||||||||||| || ||
Sbjct 1295 GTCGAATGCGAAATTCGACCCGCAGTTGAACACCACGGTTAGCGAATACACGAGGCATCG 1354
Query 1677 TGTTTCACATCCTTCTTGCCGATGGAAGATGACAAACCCAGCTGAGATTAATACCATCGT 1736
||| | ||||| |||| || ||| | ||| | ||||| | ||||| || || || ||
Sbjct 1355 GGTTCCGCATCCAGCTTGTCGTTGGGATATGGCTAACCCGGAGGAGATCAACACTATAGT 1414
Query 1737 CGTCTACAAGAAACCCGACCCTCATCTATGGGA-AAGGTCACCTAGGAGGAATTGTTGCA 1795
|| ||||| ||||| || |||||||||| ||| |||||||| || || ||||||||||
Sbjct 1415 TGTGTACAAAAAACCGGATCCTCATCTAT-GGACCAGGTCACCGAGAAGAAATTGTTGCA 1473
Query 1796 GAGTATTACAAACAAAGAGGAATAATACGTTATGGATCAATGTTGGTGTATGTAGAGCAG 1855
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1474 GAGTATTACAAACAAAGAGGAATAATACATTATGGATTAATGTTGGTGTGTGTAGAGCAG 1533
Query 1856 GTGAAGTCACTGAAGTTAAGTAATTT 1881
||||||| ||||||||||||||||||
Sbjct 1534 GTGAAGTGACTGAAGTTAAGTAATTT 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76218580245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5