BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G23490.1 Length=2027 Score E Sequences producing significant alignments: (Bits) Value Ahg492523 jgi|Araly1|492523|fgenesh2_kg.7__1956__AT4G23490.1 3057 0.0 Ahg489967 jgi|Araly1|489967|fgenesh2_kg.6__3101__AT4G11350.1 1061 0.0 > Ahg492523 jgi|Araly1|492523|fgenesh2_kg.7__1956__AT4G23490.1 Length=1996 Score = 3057 bits (1655), Expect = 0.0 Identities = 1913/2030 (94%), Gaps = 47/2030 (2%) Strand=Plus/Plus Query 2 TCTCTCTCTCTGCCCAAAGAGAAGCCC-----aaaaaaaaaaaaaaaCTTTTGTCTTTCC 56 ||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||||| Sbjct 1 TCTCTCTCTCTGCCCAAAGCGAA-CCCAAAAAAAAAAAAAAAAAAAAC-TTTGTCTTTCC 58 Query 57 CTTAATTTCTCTAATTTTCCCTCGATTTCTCTGGCATCAACAGTCTCA-TTCTCATTGAT 115 |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 59 CTTAATCTCTCTCATTTTCCCTCGATTTCTCTGGCATCAACAGTCTCATTTCTCATTGAT 118 Query 116 CTTTCTTTTTTGTAGCGAGAAAGATCCAtttttttCGGTTCGTTCTCTTCTGGGTTACGA 175 |||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 CTTTCTTTATTGTTGCAAGAAAGATCCATTTTTTTCGGTTCGTTCTCTTCTGGGTTACGA 178 Query 176 ATCAAAGAGCTACACAGACACAGACACACACTGTTTCCTGTTTCTCCCCGGATTGCAAAC 235 ||| ||||||| |||||| |||||||||||||||||||||||| |||| ||||| Sbjct 179 ATC-AAGAGCT------ACACAG--ACACACTGTTTCCTGTTTCTCCCCTGATTTCAAAC 229 Query 236 AGAACTAGGGTTTGTTTTCACAAATTTTGGATCttttttttGAAGAAAAGAACAAAATTT 295 ||||||||||||||||||||||||||||||||| |||| ||| Sbjct 230 AGAACTAGGGTTTGTTTTCACAAATTTTGGATC----TTTT----------------TTT 269 Query 296 GGATGAAAGGAAACCAGAAAGACTCGTCGGAAAAACCGATATGGGATCGGAGCTCATCAA 355 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 270 GGATGAAAGGAAACCAGAAAGATTCGTCGGAAAAACCGATATGGGATCGGAGCTCATCAA 329 Query 356 GTACATCTATACCCGGAATGTGGTCTTTAACCCGACCCGGTCCAAAACTTATGGTTTGGC 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 330 GTACATCTATACCCGGAATGTGGTCTTTAACCCGACCCGGTCCAAAACTTATGGTTTGGC 389 Query 416 TTATCTGTTTCATTGTCTTCACTTACATTATCTACATGCTTAAGCTTGTCTCTACCTCAC 475 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 390 TAATCTGCTTCATTGTCTTCACTTACATTATCTACATGCTTAAGCTTGTCTCTACCTCAC 449 Query 476 GCTCCTGTGACGATTCCACTTCTTTCACCACCGTCTCTGCTCTCTCCACAAACGTCTCTT 535 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 450 GCTCCTGTGACGATTCCACTTCTCTCACCACCGTCTCTGCTCTCTCCACAAACGTCTCCT 509 Query 536 CAAATGTCTCGTCTTTATCCACCTCCTTAGCTTCACGGCGGCGTA-ATTGGGAGGAGGAA 594 ||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||| Sbjct 510 CAAATGTCTCGTCTTTATCCACCTCCTTAGCTTCACGGCGGAG-AGAATGGGAGGAGGAA 568 Query 595 GAAGAAGACACGGTGGTGGATAAGCTGACGGATCTTAACCACGTGGTGTTTGGGATCGCT 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 569 GAAGAAGACACGGTGGTGGATAAGCTGACGGATCTTAACCACGTGGTGTTTGGGATCGCT 628 Query 655 GCGTCGTCTAAGCTATGGAAACAGAGGAAAGAGTATATCAAGATCTGGTATAAACCAAAA 714 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 629 GCGTCGTCTAAGCTATGGAAACAGAGGAAAGAGTATATCAAGATCTGGTATAAACCAAAG 688 Query 715 CGCATGCGTGGCTACGTTTGGTTAGATAAAGAGGTTAAAAAGAGTC-TTAGTGATGATGA 773 | ||||||||||||||||||||||||||||||||| | |||||| | ||| |||||| || Sbjct 689 CACATGCGTGGCTACGTTTGGTTAGATAAAGAGGTGAGAAAGAG-CGTTAATGATGACGA 747 Query 774 TGACGA--A-AAGCTTCTTCCTCCGGTGAAAATCTCCGGTGGAACTGCTTCGTTTCCTTA 830 ||||| | ||||| ||||| ||||||||||||||||| ||||||||||| |||||||| Sbjct 748 CGACGACGAGAAGCTGCTTCCGCCGGTGAAAATCTCCGGCGGAACTGCTTCTTTTCCTTA 807 Query 831 TACTAACAAACAAGGACAACGCTCTGCGTTACGGATCTCGAGGATTGTTTCTGAAACGCT 890 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 808 TACTAACAAACAAGGACAACGCTCGGCGTTACGGATCTCGAGGATTGTGTCTGAAACGCT 867 Query 891 GCGTTTAGGTCCGAAGAATGTTAGGTGGTTTGTGATGGGTGATGATGATACGGTGTTTGT 950 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 868 GCGTTTAGGTCCGAAGAATGTGAGGTGGTTCGTGATGGGTGATGATGATACGGTGTTTGT 927 Query 951 TATTGATAATTTGATTAGGGTGTTGAGGAAGTATGACCATGAGCAGATGTATTACATTGG 1010 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 928 TACTGATAATTTGATTAGGGTGTTGAGGAAGTATGACCATGAGCAGATGTATTACATTGG 987 Query 1011 GAGCTTGTCGGAATCTCATTTACAGAACATATTTTTCTCGTATGGTATGGCTTATGGTGG 1070 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 988 GAGCTTGTCGGAATCTCATTTACAGAACATATTTTTCTCGTATGGTATGGCTTATGGTGG 1047 Query 1071 AGGTGGATTTGCTATAAGCTATCCATTGGCTAAAGCTTTGAGTAAGATGCAAGATCGGTG 1130 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1048 AGGTGGGTTTGCTATAAGTTATCCATTGGCTAAAGCTTTGAGTAAGATGCAAGATCGGTG 1107 Query 1131 TATACAGAGGTATCCTGCATTGTATGGATCAGATGATCGCATGCAAGCTTGTATGGCTGA 1190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1108 TATACAGAGGTATCCTGCATTGTATGGATCAGATGATCGCATGCAAGCTTGTATGGCTGA 1167 Query 1191 ACTTGGTGTTCCACTCACTAAAGAACTCGGATTTCACCAGTACGACGTTTACGGGAACCT 1250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1168 ACTTGGTGTTCCACTCACTAAAGAACTCGGATTTCACCAGTACGACGTTTACGGGAACCT 1227 Query 1251 CTTTGGCCTTCTCGCTGCACACCCAGTAACACCGTTCGTCTCGATGCACCACCTCGACGT 1310 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1228 CTTTGGCCTCCTCGCTGCACACCCAGTAACACCGTTCGTCTCAATGCACCACCTCGACGT 1287 Query 1311 GGTGGAACCGATTTTCCCTAACATGACACGTGTCCGCGCCCTCAAGAAGATTACCGAACC 1370 |||||||||||| ||||| || |||||||||||||| || || |||||| | ||| |||| Sbjct 1288 GGTGGAACCGATCTTCCCGAATATGACACGTGTCCGTGCTCTAAAGAAGCTAACCCAACC 1347 Query 1371 TATGAAGCTTGACTCAGCCGGGCTTCTCCAGCAGTCGATATGCTACGACAAGCACAAGAG 1430 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1348 TATGAAGCTCGACTCAGCCGGGCTTCTCCAGCAGTCGATATGCTACGACAAGCACAAGAG 1407 Query 1431 CTGGACCATCTCGGTCTCTTGGGGCTACGCGGTTCAGATTTTTCGCGGAATATTCTCTCC 1490 |||||| ||||| ||||| |||||||||||||| || || || |||||||| |||||||| Sbjct 1408 CTGGACAATCTCCGTCTCCTGGGGCTACGCGGTACAAATATTCCGCGGAATTTTCTCTCC 1467 Query 1491 CCGAGAAATGGAAATGCCTTCTAGAACCTTCTTGAATTGGTACAAACGGGCGGATTACAC 1550 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1468 CCGGGAAATGGAAATGCCTTCTAGAACCTTTTTGAATTGGTACAAACGGGCGGATTACAC 1527 Query 1551 TGCTTACGCTTTCAACACTAGGCCGGTTAGCCGGAACCCGTGTCAAAAACCGTTTGTGTT 1610 |||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| Sbjct 1528 TGCTTACGCTTTCAACACCAGGCCGGTTAGCCGTAACCCGTGCCAAAAACCGTTTGTGTT 1587 Query 1611 TTACATGTCGAGCACGAAATTCGATCAGCAGCTGAACACGACGGTTAGCGAATACACGAT 1670 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1588 TTATATGTCGAGCACGAAATTCGACCAGCAGCTGAACACGACGGTTAGCGAATACACGAT 1647 Query 1671 ACACCGTGTTTCACATCCTTCTTGCCGATGGAAGATGACAAACCCAGCTGAGATTAATAC 1730 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1648 ACACCGTGTTTCGCATCCTTCTTGCCGATGGAAGATGACAAACCCAGCTGAGATTAACAC 1707 Query 1731 CATCGTCGTCTACAAGAAACCCGACCCTCATCTATGGGAAAGGTCACCTAGGAGGAATTG 1790 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1708 CATCGTCGTTTACAAGAAACCCGACCCTCATCTATGGGAAAGGTCACCTAGGAGGAATTG 1767 Query 1791 TTGCAGAGTATTACAAACAAAGAGGAATAATACGTTATGGATCAATGTTGGTGTATGTAG 1850 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1768 TTGCAGAGTATTACAAACAAAGAGGAATAATACGTTATGGATCAATGTTGGTGTATGTAG 1827 Query 1851 AGCAGGTGAAGTCACTGAAGTTAAGTAATTTT-TTAATATAGTTTATTTTTGTGAAAGGG 1909 |||||||||||||||||| ||||||||||||| ||||| |||||| ||| | | |||||| Sbjct 1828 AGCAGGTGAAGTCACTGAGGTTAAGTAATTTTCTTAATCTAGTTT-TTTGTATTAAAGGG 1886 Query 1910 AAGGAAATTAGAGtttttttAGGCTGTTTTACCGCTCTTAATTTCTTGCCACGTTATTTA 1969 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1887 AAGAAAATTAGAGTTTTTTTAGGCTGTTTTACCGTTCTTAATTTCTTGCCACGTTATTTA 1946 Query 1970 AAATTTTTATTCATTGAGATCCCGCCCTAGTTCTTCTCTCAGTATATGAT 2019 ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1947 AAATTTT-ATTCATTGAGATCCCGCCCTAGTTCTTCTCTCAGTATATGAT 1995 > Ahg489967 jgi|Araly1|489967|fgenesh2_kg.6__3101__AT4G11350.1 Length=1595 Score = 1061 bits (574), Expect = 0.0 Identities = 1057/1286 (82%), Gaps = 49/1286 (4%) Strand=Plus/Plus Query 625 GATCTTAACCACGTGGTGTTT-GGGATCGCTGCGTCGTCTAAGCTATGGAAACAGAGGAA 683 ||||| ||||| || || ||| ||||| || |||||||| |||||||||||||| ||||| Sbjct 294 GATCTAAACCATGTCGT-TTTCGGGATTGCAGCGTCGTCAAAGCTATGGAAACAAAGGAA 352 Query 684 AGAGTATATCAAGATCTGGTATAAA-CCAA-AACGCATGCGTGGCTACGTTTGGTTAGAT 741 ||||||||||||||| ||||| ||| |||| || | ||| | |||||||| ||||||||| Sbjct 353 AGAGTATATCAAGATTTGGTACAAACCCAAGAA-G-ATGAGAGGCTACGTGTGGTTAGAT 410 Query 742 AAAGAGGTTAAA-A-AGAGTCTTAGTGATGATGATGACGAAAAGCTTCTTCCTCCGGTGA 799 ||||||| |||| | | | || | || ||| | ||| | | || || ||||| | Sbjct 411 AAAGAGG-TAAAGATAAAATCCGAAACCGGA-GATCAAGAACA-C--CTCCCGCCGGT-A 464 Query 800 A-AATCTCCGGTGGA-ACTG-CTTCGTTTCCTTATACTAACAAACAAGGACAACGCTCTG 856 | |||||||||| || || | | |||||||||||||||||||| |||||||| || || | Sbjct 465 AGAATCTCCGGT-GATAC-GTCGTCGTTTCCTTATACTAACAAGCAAGGACACCGATCAG 522 Query 857 CGTTACGGATCTCGAGGATTGTTTCTGAAAC---GCTGCGT-TT-A----G-GTC--CGA 904 || |||||||||| ||||||||||| ||||| | || || || | | ||| || Sbjct 523 CGATACGGATCTCAAGGATTGTTTCGGAAACGTTGATGAGTCTTGATTCTGAGTCGAAGA 582 Query 905 AGAATGTTAGGTGGTTTGTGATGGGTGATGATGATACGGTGTTTGTTATTGATAATTTGA 964 |||| || |||||||| ||||||||||||||||||||||| ||||||| |||||| | | Sbjct 583 AGAACGTGAGGTGGTTCGTGATGGGTGATGATGATACGGTTTTTGTTACGGATAATCTAA 642 Query 965 TTAGGGTGTTGAGGAAGTATGACCATGAGCAGATGTATTACATTGGGAGCTTGTCGGAAT 1024 ||||||| ||||||||||| |||||||| ||||||||||| || || ||||||||||||| Sbjct 643 TTAGGGTTTTGAGGAAGTACGACCATGAACAGATGTATTATATAGGAAGCTTGTCGGAAT 702 Query 1025 CTCATTTACAGAACATATTT-TTCTCGTATGGTATGGCTTATGGTGGAGGTGGATTTGCT 1083 ||||||| ||||| || ||| ||||| ||||| ||||||||||||||||| || ||||| Sbjct 703 CTCATTTGCAGAATAT-TTTCTTCTCTTATGGAATGGCTTATGGTGGAGGAGGTTTTGCG 761 Query 1084 ATAAGCTATCCATTGGCTA-AAGCTTTGAGTAAGATGCAAGATCGGTGTA-TACAGAGGT 1141 || || ||||| ||||| | |||||||||||||||||||||||||||| || |||||| Sbjct 762 ATTAGTTATCCTTTGGC-AGTGGCTTTGAGTAAGATGCAAGATCGGTGTATTA-AGAGGT 819 Query 1142 ATCCTGCATTGTATGGATCAGATGATCGCATGCAAGCTTGTATGGCTGAACTTGGTGTTC 1201 |||| || |||||||| || |||||||| |||||||||||||||||||| ||||| |||| Sbjct 820 ATCCGGCTTTGTATGGTTCTGATGATCGGATGCAAGCTTGTATGGCTGAGCTTGGAGTTC 879 Query 1202 CACTCACTAAAGA-ACTCGGATTTCACCAGTACGACGTTTACGGGAACCTCTTTGGCCTT 1260 || | ||||| || | |||| ||||| || ||||||||| | |||||||| || ||||| Sbjct 880 CATTGACTAAGGAGA-TCGGTTTTCATCAATACGACGTTCATGGGAACCTATTCGGCCTC 938 Query 1261 CTCGCTGCACACCCAGTAACACCGTTCGTCTCGATGCACCACCTCGACGTGGTGGAACCG 1320 || ||||| || || ||||||||||| || || |||||||| || || |||||||||||| Sbjct 939 CTAGCTGCTCATCCGGTAACACCGTTTGTATCAATGCACCATCTTGATGTGGTGGAACCG 998 Query 1321 ATTTTCCCTAACATGACACGTGTCCGCGCCCTCAAGAAGATTACCGA-ACCTATGAAGCT 1379 ||||| || |||||||| ||||| |||||| ||||||| | || | | ||| |||||| | Sbjct 999 ATTTTTCCAAACATGACCCGTGTTCGCGCCATCAAGAA-ACTAACTACACCGATGAAGAT 1057 Query 1380 TGACTCAGCCGGGCTTCTCCAGCAGTCGATATGCTACGACAAGCACAAGAGCTGGACCAT 1439 ||| || || ||||||||||| || || |||||||| |||||||| || |||||||| || Sbjct 1058 TGATTCGGCTGGGCTTCTCCAACAATCAATATGCTATGACAAGCATAAAAGCTGGACGAT 1117 Query 1440 CTCGGTCTCTTGGGGCTACGCGGTTC-AGATTTTTCGCGGAAT-ATTCTCTCCCCGAGAA 1497 |||||||| ||||| | ||||||| || | || || || || ||||| || || ||| Sbjct 1118 TTCGGTCTCGTGGGGATTTGCGGTTCAAG-TGTTCCGTGG-ATCCTTCTCACCACGGGAA 1175 Query 1498 ATGGAAATGCCTTCTAGAACCTTCTTGAATTGGTACAAACGGGCGGATTACACTGCTTAC 1557 |||||||||||||||||||| |||||||||||||||||| | || |||||||| || ||| Sbjct 1176 ATGGAAATGCCTTCTAGAACTTTCTTGAATTGGTACAAAAGAGCTGATTACACCGCCTAC 1235 Query 1558 GCTTTCAACACTAGGCCGGTTAGCCGGAACCCGTGTCAAAAACCGTTTGTGTTTT-ACAT 1616 || ||||| |||||||| || || || || | || |||||||||||||| |||| |||| Sbjct 1236 GCATTCAATACTAGGCCCGTGAGTCGCAATCATTGCCAAAAACCGTTTGT-TTTTCACAT 1294 Query 1617 GTCGAGCACGAAATTCGATCAGCAGCTGAACACGACGGTTAGCGAATACACGATACACCG 1676 ||||| |||||||||| | |||| ||||||| ||||||||||||||||||| || || Sbjct 1295 GTCGAATGCGAAATTCGACCCGCAGTTGAACACCACGGTTAGCGAATACACGAGGCATCG 1354 Query 1677 TGTTTCACATCCTTCTTGCCGATGGAAGATGACAAACCCAGCTGAGATTAATACCATCGT 1736 ||| | ||||| |||| || ||| | ||| | ||||| | ||||| || || || || Sbjct 1355 GGTTCCGCATCCAGCTTGTCGTTGGGATATGGCTAACCCGGAGGAGATCAACACTATAGT 1414 Query 1737 CGTCTACAAGAAACCCGACCCTCATCTATGGGA-AAGGTCACCTAGGAGGAATTGTTGCA 1795 || ||||| ||||| || |||||||||| ||| |||||||| || || |||||||||| Sbjct 1415 TGTGTACAAAAAACCGGATCCTCATCTAT-GGACCAGGTCACCGAGAAGAAATTGTTGCA 1473 Query 1796 GAGTATTACAAACAAAGAGGAATAATACGTTATGGATCAATGTTGGTGTATGTAGAGCAG 1855 |||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| Sbjct 1474 GAGTATTACAAACAAAGAGGAATAATACATTATGGATTAATGTTGGTGTGTGTAGAGCAG 1533 Query 1856 GTGAAGTCACTGAAGTTAAGTAATTT 1881 ||||||| |||||||||||||||||| Sbjct 1534 GTGAAGTGACTGAAGTTAAGTAATTT 1559 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76218580245 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5