BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G23493.1

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492522 jgi|Araly1|492522|fgenesh2_kg.7__1955__AT4G23493.1         610    3e-174


> Ahg492522 jgi|Araly1|492522|fgenesh2_kg.7__1955__AT4G23493.1
Length=478

 Score =  610 bits (330),  Expect = 3e-174
 Identities = 399/432 (92%), Gaps = 6/432 (1%)
 Strand=Plus/Plus

Query  1    GCCTTTGAAATTATCCAAACTAAAAACAAATCTGCGATCAGTCTTCACTGAAG-AAAAGC  59
            |||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |
Sbjct  1    GCCTTTGAAATTATCC-AACT-AAAACAAATCTGCGATCAGTCTTCACTGAAGAAAAAAC  58

Query  60   TTTCGCAAAAGAAGAAACCGAGACACTCATTTGAATTTGCTCAGACTTTGAAATCTGATA  119
            ||| || |||| ||||| |||||||||| ||||| |||||||||  ||||||||||| ||
Sbjct  59   TTTTGCGAAAGGAGAAATCGAGACACTCGTTTGATTTTGCTCAGTTTTTGAAATCTGGTA  118

Query  120  TATATTGAGATCAACGTAGAACCTAACCTCATGCGACGTTTTCCTGCTCTTATAGAGAAG  179
            ||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  119  TATATAGAGACCAACGTAGATCCTAACCTCATGCGACGTTTTCCTGCTCTTATAGAGAAG  178

Query  180  TTAAAACCGATCTTCACGGTCTCAGGATCAAACGGTAAAGTGGTAAGAACCATTGTACCG  239
             | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  179  CTCAAACCGATCTTCACGGTCTCAGGATCAAACGGTAAAGTGGTGAGAACCATTGTACCA  238

Query  240  AAGAAACCTGTGAACGAGAACATTAGTGAAAGCGAAACAATGAAGAAGATGGAGGAAACG  299
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  239  AAGAAACCTGTGAACGAGAACATTAGTGAAAGCGAAACACTGAAGAAGATGGAGGAAACG  298

Query  300  GTAGAGCCTATGGTTGCCTTAAGTAGACCACCACCATTTTCACCATTTGTCGGTCCAGTG  359
            |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct  299  GTAGAGCCAATGGTTGCCTTTAGTAGACCACCGCCATTTTCACCATTTGTCGGTCCATTG  358

Query  360  CTCATGTATTCCCTGCTTCAATCATGGACGTCTAGCCGCGACGAAGACGGCTAGTTGTGT  419
            ||| |||||||||| ||||||||||||   ||||| ||||| ||||||||||||||||||
Sbjct  359  CTCGTGTATTCCCTTCTTCAATCATGG---TCTAGTCGCGATGAAGACGGCTAGTTGTGT  415

Query  420  CAGCCAAAGTTT  431
            | ||||||||||
Sbjct  416  CTGCCAAAGTTT  427



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20451395704


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5