BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23496.1
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492521 jgi|Araly1|492521|fgenesh2_kg.7__1954__AT4G23496.1 872 0.0
> Ahg492521 jgi|Araly1|492521|fgenesh2_kg.7__1954__AT4G23496.1
Length=628
Score = 872 bits (472), Expect = 0.0
Identities = 585/637 (92%), Gaps = 17/637 (3%)
Strand=Plus/Plus
Query 3 TTAGTACTCAGCATTGTCTGATTAAGCTGTCGTACAAAACAAGTCAGCTATTTAGTTAGG 62
|||||||||||| || |||||||||| |||||||||||||||||| |||| || |||||
Sbjct 1 TTAGTACTCAGCGTTTTCTGATTAAGTTGTCGTACAAAACAAGTCTGCTAAATAATTAGG 60
Query 63 GTTTGGTCGGCAATTAAATAATCTATCAACCTAATTGGCTCTCAATCGGAAAATGAGCCG 122
|||||||| || ||| ||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 61 GTTTGGTCAGC-ATTTAATAATCTATCAAGCTAATTGGCTCTCAATCGGACAATGAGCCG 119
Query 123 AGGTGGGAGCTTTGGAGGCGGACAAAGCTCGTTAGGTTATCTTTTTGGGTCAGACAATGA 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 AGGTGGGAGCTTTGGAGGCGGACAAAGCTCGTTAGGTTATCTTTTTGGGTCAGATAATGA 179
Query 183 GATTCCAAAAACTCCCGCTCCACCGGTAGCCCCAAAGCCTGCACCACCGTACGGTGTAGA 242
|||||||||||| || ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 180 GATTCCAAAAACGCC---TCCACCGGTGGCCCCAAAGCCTGCACCACCGTACGGCGTAGA 236
Query 243 TTCCACAGAGGAGGACCATGAAGCTGACCAAAAACCCAAGATCTCTAACAACAACTACCA 302
|||||| ||||| | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 237 TTCCACCGAGGAC-A--ATGAAGCTGACCAAAAGCCCAAGATCTCTAACAACAACTACCA 293
Query 303 AAGAGTTCAGGGCCAAAACTCCGGCAACTTCGTCACCGATCGTCCAACGACGAAGGTGAA 362
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 AAGAGCTCAGGGCCAAAACTCCGGCAACTTCGTCACCGATCGTCCAACGACGAAGGTGAA 353
Query 363 ATCGGTTCCTGGTGGAGGCTCATCTCTAGGATACTTGTTCGGAGATAAGTGAAGAAATGA 422
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||
Sbjct 354 ATCGGTTCCTGGTGGAGGCTCATCTCTAGGATACATGTTCGGAGATAAGTAAAGGAATGA 413
Query 423 AAATGAAGTTAAAAAACTAGGGTTTGTATCTCTCTAGTGAGGCTTTTACTCTAT-ATCAT 481
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 414 AAATGAAGTTAAAAAACTAGGGTTTGTATCTCTCTAGTGAGGCTTTTACTATATTAT-AT 472
Query 482 ACGTACGTAATGTAATGTGGAGATCCCTATCTAGATCTCTACACATCACTTATTTATATT 541
| ||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||
Sbjct 473 -CATACGTAATGTAATGTAGAGATCCTTATCTAGATTTCTACACATCAGTTATTTATATT 531
Query 542 TACGTATGAAAATGTGTGTTTTGAGTTAACAGTTAATTACTTTCAACTTGTGGAA-AAAG 600
||||| || |||||||||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct 532 TACGTGTGGAAATGTGTGTTTTGAGTTTGCAGTTAATTAATTTCAACTTGTGGAACAAAG 591
Query 601 GGTT-T-CT----AGTCAATATTTTCAGCAATATATA 631
| || | || |||| |||||||||||||||||||
Sbjct 592 GATTCTACTTTCTAGTCGATATTTTCAGCAATATATA 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23903068959
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5