BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23500.1
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492520 jgi|Araly1|492520|fgenesh2_kg.7__1953__AT4G23500.1 2462 0.0
Ahg901622 jgi|Araly1|901622|Al_scaffold_0004_2272 726 0.0
> Ahg492520 jgi|Araly1|492520|fgenesh2_kg.7__1953__AT4G23500.1
Length=1623
Score = 2462 bits (1333), Expect = 0.0
Identities = 1537/1634 (94%), Gaps = 19/1634 (1%)
Strand=Plus/Plus
Query 11 aaaaaaaaTCCATTTTCATTTCTCCTCT-TAAAAAACCGCCATG---ACCTCTCTCTCCA 66
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1 AAAAAAAATCCATTTTCATTTCTCCTCTAGAAAAAACCGCCATGCCAACCTCTCTCTCCA 60
Query 67 CCGCCGGTTACCTTCTTCTCCTTCTCCTTCTCCCTATAAGCTACGACGGTGGCTTCATC- 125
||||||||||||||||||||||||| | || ||| ||||||||||||||||||| |
Sbjct 61 CCGCCGGTTACCTTCTTCTCCTTCT-C--CT---TATCAGCTACGACGGTGGCTTCA-CT 113
Query 126 GGAGCCGCCGATGCAGAACATGACCTCAGAGCCACTGATCTCCATAATCATCGCCATCGT 185
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 GGAGCCGCCGATGCCGAACATGACCTCAGAGCCACTGATCTCCATAATCATCGCCATCGT 173
Query 186 CGCCACCGTAACCACCATCGCGGAGAAGAGTTTGAGTACTCAGCCATATCATGTAGAGCT 245
|||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 174 CGCCACCGTAGCCACCGCCGCGGAGAAGAGTTCGAGTACTCAGCAATATCGTGTAGAGCT 233
Query 246 TACTCAGCCTCATTGGACGAGTTTGGCGCCGTAGGAGACGGTGTAACTTCAAATACAGCG 305
||||||||||| || ||||||||||| ||||| ||||||||||| || |||||||| |||
Sbjct 234 TACTCAGCCTCGTTAGACGAGTTTGGTGCCGTGGGAGACGGTGTGACCTCAAATACGGCG 293
Query 306 GCGTTTCGCGACGCGGTGTCACAACTTAGCCGTTTCGCAGACTACGGTGGCTCATTGTTA 365
||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 294 GCGTTTCGCGATGCAGTCTCACAACTTAGCCGTTTTGCAGACTACGGTGGCTCATTGTTA 353
Query 366 TTTGTTCCCGCCGGACGGTGGCTCACCGGAAACTTTAACCTGACCAGCCATTTTACGCTT 425
||||||||||||||||||||||||||||| | ||||||||| ||||||||||| || |||
Sbjct 354 TTTGTTCCCGCCGGACGGTGGCTCACCGGGAGCTTTAACCTCACCAGCCATTTCACACTT 413
Query 426 TTCCTCCACCGTGATGCTGTTATCCTCGCCTCTCAAGAAGAGAGTGACTATGAAGTGATA 485
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TTCCTCCACCGTGATGCCGTTATCCTCGCCTCTCAAGAAGAGAGTGACTATGAAGTGATA 473
Query 486 GAGCCACTGCCTTCGTACGGAAGAGGGCGAGACACAGATGGTGGAAGGTTCATCAGTCTA 545
|| ||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||| ||
Sbjct 474 GAACCACTACCTTCGTACGGACGAGGGAGAGACACTGATGGTGGAAGGTTCATCAGTTTA 533
Query 546 CTTTTTGGTTCAAACTTAACCGATGTTGTTATCACCGGTGAGAATGGGACAATTGATGGA 605
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 534 CTTTTCGGTTCAAACTTAACCGACGTGGTTATCACCGGTGAGAATGGGACAATTGATGGA 593
Query 606 CAAGGAGAACCATGGTGGGGGAAATTCAAGAGAGGAGAACTAAAATACACAAGACCTTAT 665
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 594 CAAGGAGAGCCATGGTGGGGAAAATTCAAGAGAGGAGAACTAAAATACACAAGACCTTAT 653
Query 666 TTGATTGAGATTATGCATTCTGATGGTATCCAAATCTCCAATCTCACTTTCTTGAATTCT 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TTGATTGAGATTATGCATTCTGATGGTATCCAAATCTCCAATCTCACTTTCTTGAATTCT 713
Query 726 CCTTCTTGGCATATTCACCCGGTCTACAGCAGCAATATATATATCCAAGGTTTGACGATA 785
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 714 CCTTCTTGGCATATTCACCCGGTCTACAGCAGAAATATATTTATCCAAGGTTTGACGATA 773
Query 786 TTAGCACCGGTCACGGTACCAAACACTGACGGTATCAACCCAGATTCTTGTACCAACACG 845
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct 774 TTAGCACCGGTCACGGTACCAAATACCGACGGGATCAACCCAGATTCTTGTACTAACACG 833
Query 846 AGGATTGAGGACTGCTACATTGTCTCCGGCGACGATTGTATCGCCGTTAAAAGTGGATGG 905
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 834 AGGATTGAGGACTGCTACATTGTCTCCGGCGACGATTGTATCGCCGTGAAGAGCGGATGG 893
Query 906 GATCAATACGGAATCAACTACGGCATGCCTACGAAACAGCTCTTGATCCGACGGCTCACA 965
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 894 GATCAATACGGAATCAACTACGGCATGCCTACAAAACAGCTCTTGATCCGACGGCTCACA 953
Query 966 TGCATTTCTCCTGATAGTGCCGTGATCGCTCTCGGCAGTGAAATGTCCGGTGGAATTGAA 1025
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TGCATTTCCCCTGACAGTGCCGTGATCGCTCTCGGCAGTGAAATGTCCGGTGGAATTGAA 1013
Query 1026 GATGTTCGAGCTGAAGATATTGTTGCCATTAACTCTGAATCTGGAATCAGGATTAAAACA 1085
|||||| | ||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1014 GATGTTAGGGCTGAAGATATCGTCGCCATTAACTCTGAATCTGGAATTAGGATTAAAACA 1073
Query 1086 GCTATCGGACGAGGAGGTTACGTGAAGGATGTATACGTAAGAGGAATGACAATGA-TGAC 1144
||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||| | ||
Sbjct 1074 GCTATTGGACGAGGAGGATACGTGAAAGATGTATATGTAAGAGGAATGACAATGAAT-AC 1132
Query 1145 AATGAAATATGTGTTTTGGATGACCGGAAGTTACGGTTCGCATCCGGACGATCATTATGA 1204
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1133 GATGAAATATGTGTTTTGGATGACCGGAAGTTACGGTTCTCATCCTGACGAGCATTATGA 1192
Query 1205 TCCGAAAGCGTTACCGGTGATTCAGAACATTAATTATCAAGACATGGTCGCCGAGAACGT 1264
|||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 1193 TCCGAAAGCGTTACCGGTGATTCAGAACATCAATTACCAAGATATGGTCGCGGAGAACGT 1252
Query 1265 GACGATGCCTGCTCAGTTAGCTGGAATATCGGGAGATCAGTTTACTGGAATTTGTATCTC 1324
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1253 GACGATGCCTGCTCAGTTGGCTGGAATATCGGGAGATCAGTTTACTGGAATCTGTATCTC 1312
Query 1325 TAACGTGACTATCACTCTATCGAAGAAACCTAAGAAAGTGCTTTGGAATTGTACTGATGT 1384
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1313 TAACGTGACGATCACTCTTTCGAAGAAACCTAAGAAAGTGCTTTGGAATTGTACGGATGT 1372
Query 1385 TTCGGGTTATACTAGTGGTGTGACTCCGCAGCCGTGTCAG-TTGTTACCGGAGAAGCAGC 1443
|||||||||||| ||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1373 TTCGGGTTATACAAGTGGTGTGACTCCGCAGCCGTGTCAGCTT-TTGCCGGAGAAGCAGC 1431
Query 1444 CGGGGACGGTTGTGCCGTGTAATTTCCCGGAAGATCCGATTCCTATTGATGAAGTGAAGC 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 CGGGGACGGTTGTGCCGTGTAATTTCCCGGAAGATCCGATTCCTATTGATGAAGTGAAGC 1491
Query 1504 TTCAACGTTGCTACTCCAGAAGAAGGAATATGTGAACATGTAATAAGATCTTCttttttt 1563
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1492 TTCAACGTTGCTACTCCAGAAGAAGGAATATGTGAACATGTAA-AAGATCTTTTTTTTTT 1550
Query 1564 t-AACAAATACTTTTCTTGGGTTATAAGTAAATGTGTTATCAAATGGGGACATATTTGAT 1622
| |||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| ||
Sbjct 1551 TTAACAAATACTTTTCTTGGGTTATAAGTAAACGTGTTATCAAATGGG-ACAGATTTTAT 1609
Query 1623 TGAATAATAAACAA 1636
||||||||| ||||
Sbjct 1610 TGAATAATAGACAA 1623
> Ahg901622 jgi|Araly1|901622|Al_scaffold_0004_2272
Length=462
Score = 726 bits (393), Expect = 0.0
Identities = 441/464 (95%), Gaps = 4/464 (1%)
Strand=Plus/Plus
Query 1077 ATTAAAACAGCTATCGGACGAGGAGGTTACGTGAAGGATGTATACGTAAGAGGAATGACA 1136
|||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 1 ATTAAAACAGCTATTGGACGAGGAGGATACGTGAAAGATGTATATGTAAGAGGAATGACA 60
Query 1137 ATG-ATGACAATGAAATATGTGTTTTGGATGACCGGAAGTTACGGTTCGCATCCGGACGA 1195
||| || || |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 61 ATGAAT-ACGATGAAATATGTGTTTTGGATGACCGGAAGTTACGGTTCTCATCCTGACGA 119
Query 1196 TCATTATGATCCGAAAGCGTTACCGGTGATTCAGAACATTAATTATCAAGACATGGTCGC 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCATTATGATCCGAAAGCGTTACCGGTGATTCAGAACATTAATTATCAAGACATGGTCGC 179
Query 1256 CGAGAACGTGACGATGCCTGCTCAGTTAGCTGGAATATCGGGAGATCAGTTTACTGGAAT 1315
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 CGAGAATGTGACGATGCCTGCTCAGTTGGCTGGAATATCGGGAGATCAGTTTACTGGAAT 239
Query 1316 TTGTATCTCTAACGTGACTATCACTCTATCGAAGAAACCTAAGAAAGTGCTTTGGAATTG 1375
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 CTGTATCTCTAACGTGACGATCACTCTTTCGAAGAAACCTAAGAAAGTGCTTTGGAATTG 299
Query 1376 TACTGATGTTTCGGGTTATACTAGTGGTGTGACTCCGCAGCCGTGTCAG-TTGTTACCGG 1434
||| ||||||||||||||||| ||||||||||||||||||||||||||| || || ||||
Sbjct 300 TACGGATGTTTCGGGTTATACAAGTGGTGTGACTCCGCAGCCGTGTCAGCTT-TTGCCGG 358
Query 1435 AGAAGCAGCCGGGGACGGTTGTGCCGTGTAATTTCCCGGAAGATCCGATTCCTATTGATG 1494
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGAAGCAGCCGGGGGCAATTGTGCCGTGTAATTTCCCGGAAGATCCGATTCCTATTGATG 418
Query 1495 AAGTGAAGCTTCAACGTTGCTACTCCAGAAGAAGGAATATGTGA 1538
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAGTGAAGCTTCAACGTTGCTACTCCAGAAGAAGGAATATGTGA 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62239460330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5