BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23510.1
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889815 jgi|Araly1|889815|Al_scaffold_0007_1801 2689 0.0
> Ahg889815 jgi|Araly1|889815|Al_scaffold_0007_1801
Length=2640
Score = 2689 bits (1456), Expect = 0.0
Identities = 1779/1927 (92%), Gaps = 53/1927 (3%)
Strand=Plus/Plus
Query 34 AGTCGCGGAAGCCTCAAGTGTTCATCAGTTTCAGGGGTAAAGCTCAAAGGAAAACCTTAG 93
||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 728 AGTCGCGAAAGCCTCAAGTGTTCATTAGTTTCAGGGGTAAAGCTCAAAGAAAAACCTTAG 787
Query 94 TGAGCTTTATAAAGTCAAAGTTAGAGGAGATCAGCGAAATCAATGTTTTCATGGACGAGT 153
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 788 TGAGCTTTATAAAGTCAAAGTTAGAAGAGATCAGCGAAATCAATGTTTTCATGGACGAGT 847
Query 154 ACGAGATTAGAGGGAGGCCAATCACAACACTCTTCGAACGAATCAGAGAGTCAAGTATCG 213
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 848 ACGAGATTAGAGGGAGGCCAATCACAACACTCTTTAAACGAATCAGAGAGTCAAGTATCG 907
Query 214 CACT-AGTCATCTTCTCAGACAAGTACCCTGAGTCACGCTGGTGCTTAGACGAGCTAGTT 272
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 CACTCA-TCATCTTCTCAGACAAGTACCCTGAGTCACGCTGGTGCTTAGACGAGCTAGTT 966
Query 273 GAGATCAAGAAGCAAATGGAGACAGGATCTATTGTTCCCTTTCCAATATTCTACAAAGTG 332
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 967 GAGATCAAGAAGCAAATGGACACAGGATCTATTGTTCCCTTTCCAATATTCTACAAAGTG 1026
Query 333 AAAGCTGAGTCCGTCAAGAATCAGACTGGTCACTTCCGTAATGTTCTCCTCAAAACTGAG 392
||||||| |||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 1027 AAAGCTGTGTCCGTCAAGAACCAGACTGGTCACTTTCGTAATGTTCTCCTCAAGACTGAG 1086
Query 393 GAAGACGTTCGCAAAAAGGTTGATAGGAGCAACATCAGGTCAATACTTGAAACAGAGGAT 452
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1087 GATGACGTTCGCAAAAAGGTTGATAGGAGAAACATCAGGTCAATACTTGAAACAGAGGAT 1146
Query 453 ATGATTTGGGGATGGAGACAAGCTTTAGTCTCTGTTGGTGGAAGAATGGGGTTTTCTTAT 512
||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1147 ATGATTTGGGGTTGGAGGCAAGCTTTAGTCTCCGTTGGCGGAAGAATGGGGTTTTCTTAT 1206
Query 513 AATCATAAATGTGATAACGATTTCGTTAACGATATTGTGGTCCAGATCAAGAAAATGTTA 572
|||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1207 AATCATAAATGTGACAACGATTTCGTTAATGATATTGTGGTCCAGGTCAAGAAAATGTTA 1266
Query 573 GCCGATTTATCTCCATCTCCAAGAAATGGTCTTAAAATCATAGAGAGGCCTCAGATGCAT 632
||||||||||||||| |||||||||||||||| |||||||| ||| | || |
Sbjct 1267 GCCGATTTATCTCCAACTCCAAGAAATGGTCTCAAAATCAT--AGA-G----AG--G--- 1314
Query 633 CCTCAGGAAGAAGTAACGTCATTGTTACAAGCTCTAAACCTTAAGAAATCTGATCTTGAA 692
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CCTCAGGAAGAAGTGACGTCCTTGTTACAAGCTCTAAACCTTAAGAAATCTGATCTTGAA 1374
Query 693 GATCTTATTCATATCAATGGCGTCGTTTCCCATGGCACTGATCGTCTGGTGTTTCTTGAC 752
||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1375 GATCTTATTCATACCAATGGCGTCGTTTCCCAGGGCACTGATCTTCTGGTGTTTCTTGAC 1434
Query 753 CTGATCTCTCTTCAGAATCCTATCCTCGCTGATCGATTAATCGAGCTAGTTCAAGCTGGA 812
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1435 CTGATCTCTCTTCAGAATCCTATCCTTGCTCAGCGATTAATCGAGCTAGTTCAAGCTGGA 1494
Query 813 AGGAATCTCTTGGTGTTGTTAGGTTCTCTAGAATACTACAATAAAGG-TTTCACTTTCAA 871
|||| ||||||||||||||||||||||||||||||||||||||| || ||| | ||||||
Sbjct 1495 AGGATTCTCTTGGTGTTGTTAGGTTCTCTAGAATACTACAATAATGGTTTTGA-TTTCAA 1553
Query 872 GCGTATCTTTCTTCCCAAGAAATCTCAACAATTGCCTGGTTACACAGTTGTGGCAGAGAG 931
|||| ||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1554 GCGTCTCTTTCTGCCCAAGAAATCTCAACAATTGCCTGGTAACACAGCTGTGGCAGAGAG 1613
Query 932 TAATGACAATCTTCGTAACCATGAAGTTAGCTACTCTGATACTGTTTTGACCTGTTTTTC 991
|||||||||||||||||| | ||||||||||||| ||||| ||||||||||||| |||||
Sbjct 1614 TAATGACAATCTTCGTAATCGTGAAGTTAGCTACACTGATGCTGTTTTGACCTGCTTTTC 1673
Query 992 ATTCTTATGTAACATACTGAAACGTAGTGAAATGAAAATCGACCCTCTATCTCAAAGAGT 1051
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 1674 ATTCTTATGTAACATACTGAACCGTAGTGAAATGAAAATCGACCCTCCATCTCGAAGAGT 1733
Query 1052 ATTCATCGGTCTTGGAGAAAAGCATCTCGGAAAATTCCTAGTGAGCTCTCTAAAAGAAGA 1111
|||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1734 GTTCATCAGTCTTGGAGAAAAGCATCTCGGAAAATTCCTAGTGAACTCTCTGAAAGAAGA 1793
Query 1112 ATTGGAATCGAACCAAATATTAGTGTATGTAGAGGATGAGACGAAGAGCAGGATCAAAGA 1171
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1794 ATTGGAGTCGAACCAAATATTAGTGTATGGAGAGGATGAGACGAAGAGCAGGATCAAGGA 1853
Query 1172 GTCAGGGGTTGCAGTAGTGTTCTTCTCAAAGAAGTACCCTAATTCTGAAAAGTGTCTTGA 1231
||||||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||
Sbjct 1854 GTCAGGGGTTGCAGTAGTGGTCTTCTCAAATAAGTACCCTAAGTCAGAAAAGTGTCTTGA 1913
Query 1232 TGAGCTCGTTGAGATCAAGAAACTTATGGACGCAGGGAAAATCGATCCCTTGCCTGTTTT 1291
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1914 TGAGCTCGTTGAGATCAAGAAACTTATGGACACAGGGAAAATCGATCCCTTGCCTGTTTT 1973
Query 1292 TTACAGCTTAAAGGATGAACCAGTTAAGAATCTCAAGGGATATTTCCTTAATAGGCTTCT 1351
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1974 TTACAGCTTAAAGGATGAACCAGTTAAGAAGCTCAAGGGATGTTTCCTTAATAGGCTTCT 2033
Query 1352 CAAGATAGAGAATGAAGTGCGTAAGAACATCAAGACGAGAGATGATAAGTCTATACTTGA 1411
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 CAAGATAGAGGACGAAGTGCGTAAGAACATCAAGACGAGAGATGATAAGTCTATACTTGA 2093
Query 1412 TACTGAAGCTAAAATCTGGGGATGGAGAGATGCTCTCTCGTCCATTGCCTCAAGACCGGG 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 TACTGAAGCTAAAATCTGGGGATGGAGAGATGCTCTCTCGTCCATTGCCTCAAGACCGGG 2153
Query 1472 TCTGAGCTATGAGCTTAGCACTGATGACGTGTTCGTTAGTGATATTGTGACCAAGGTCAA 1531
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2154 TCTGAGCTATGAACTTAGCACTGATGACGTTTTCGTCAGTGATATTGTGACCAAGGTCAA 2213
Query 1532 TGAACTATTTGCCTCAAGGGAGAGAAAGAAGACAGAAGCAGCAACAACAGTTGTCAAAAC 1591
||||||| ||||||| ||||||||||||||||||||||||| ||||||||| |||||| |
Sbjct 2214 TGAACTACTTGCCTCTAGGGAGAGAAAGAAGACAGAAGCAGAAACAACAGTAGTCAAATC 2273
Query 1592 TCTCGATGCTGATGACTTATTCTATTCCCGAACTTCGTTCTTACAAGCTATAGACCGTGA 1651
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2274 CCTTGATG---ATGACTTATTCTATTCCCGAACTTCGTTCTTACAAGCTATAGACCGTGA 2330
Query 1652 CATTACAGATTTTGAAAGCTTCACTGATATCCCAAATGGTCTTGTACTTCTGAGGCTTAA 1711
|| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 2331 CAATACAGATTTTGAAAGCTTCACAGATATCCCCCATGGTCTTGTACTTCTGAGGCTTAA 2390
Query 1712 AGGACACACTAATCTAGTGTTCCTCAAACTGAGTTCTCATGAAAATCTG---CT---G-C 1764
|||||||||||||||||||||||||||||||||||||||||||||| || || | |
Sbjct 2391 AGGACACACTAATCTAGTGTTCCTCAAACTGAGTTCTCATGAAAATTTGTTGCTTAAGAC 2450
Query 1765 AGGTTTTATACTTGTTG-T------CTTTGGATTTTAACAAAAG-AG-GAGGGGA----A 1811
||||||||||||||||| | |||||||||||||||||| | || | |
Sbjct 2451 AGGTTTTATACTTGTTGATTGTTGTCTTTGGATTTTAACAAAACCATTGACTATATCTTA 2510
Query 1812 -GCCGA--A--A--GCA--T-T---GTGACTTCTGCTAGTGGTAGCATTGTAGCTGCTTC 1858
| || | | ||| | | |||| |||| ||||| |||||||||||||||||||
Sbjct 2511 TGATGACGATGACCGCAACTCTTCAGTGAGTTCTACTAGTTGTAGCATTGTAGCTGCTTC 2570
Query 1859 TTCAATGTTTCAGCCACTCGATAATAGTATTCGGATTGACCTCAATAGACAAAAATATGC 1918
| |||| |||||| ||||| || |||| |||||||||||||||||||||||||| |||
Sbjct 2571 TCCAATCTTTCAGTCACTCCATGTTAGTCTTCGGATTGACCTCAATAGACAAAAAGATG- 2629
Query 1919 AACTTGA 1925
|||||||
Sbjct 2630 AACTTGA 2636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72333375255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5