BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23520.1
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329301 jgi|Araly1|329301|fgenesh1_pm.C_scaffold_7001528 1615 0.0
> Ahg329301 jgi|Araly1|329301|fgenesh1_pm.C_scaffold_7001528
Length=1074
Score = 1615 bits (874), Expect = 0.0
Identities = 1011/1077 (94%), Gaps = 9/1077 (1%)
Strand=Plus/Plus
Query 1 ATGGGCTTTGTTAGACCTGTTTGCATGACAATCCTC-T--TTCTTTTGATTGTATTCGTT 57
|||||||||||||||||||||||||||||||||||| | ||||||| || ||||| ||
Sbjct 1 ATGGGCTTTGTTAGACCTGTTTGCATGACAATCCTCTTAATTCTTTTTATAATATTCCTT 60
Query 58 CTTTCGGCGCCGTCCTCGGCCATGGACCTTCCCGCCACATCCGGTGGTCACAACCGGAGC 117
||||| | |||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 61 CTTTCAGTGCCGTCTTCGGCCATTGACCTACCCGCCACATCCGGTGGTCACAACCGGAGC 120
Query 118 AACGAGGAGGTTGAGTTTATTTTCCAAATGTGGATGTCCAAGCACGGGAAGACTTATACC 177
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACGAGGAGGTTGGGTTTATCTTCCAAATGTGGATGTCCAAGCACGGGAAGACTTATACC 180
Query 178 AATGCTCTCGGAGAGAAGGAACGGCGTTTTCAGAACTTCAAGGACAATCTCCGTTTCATC 237
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 181 AATGCTCTCGGAGAGAAGGAACGGCGGTTTCAGAACTTCAAGGACAATCTCCATTTCATC 240
Query 238 GACCAGCACAATGCAAAGAACCTCTCTTACCAGCTTGGTTTGACTCGGTTTGCAGACCTA 297
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 241 GACCAGCACAATGCAAAGAACCTCTCCTACCAGCTTGGTTTGACTCGGTTTGCTGACCTA 300
Query 298 ACCGTTCAAGAGTACCGAGACCTTTTCCCTGGAAGCCCTAAACCGAAACAAAGGAATCTC 357
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 ACCGTTCAAGAGTACCGAGACCTTTTCCCTGGAAGCCCTAAACCAAAACAAAGGAATCTC 360
Query 358 AAAACCAGTCGTAGGTACGTGCCACTCGCCGGAGATCAGC-TCCCAGAGTCAGTTGACTG 416
| || |||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||
Sbjct 361 AGAATCAGTCGTAGGTATGTGCCACTCGACGGAGATCAGCTTCCC-GAGTCAGTTGACTG 419
Query 417 GAGGCAA-GAAGGTGCAGTGTCGGAAATTAAAGACCAAGGCACTTGCAACAGCTGCTGGG 475
|||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 GAGG-AACGAAGGTGCAGTGTCGGCTATTAAAGACCAAGGCACTTGCAACAGCTGCTGGG 478
Query 476 CGTTCTCCACAGTGGCAGCAGTAGAGGGATTAAACAAGATTGTGACAGGAGAGTTAATCT 535
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||
Sbjct 479 CGTTCTCCACAGTGGCAGCAGTAGAGGGAATAAACAAGATCGTGACAGGAGAGTTAGTCT 538
Query 536 CATTGTCCGAGCAAGAATTGGTCGACTGCAACCTAGTCAACAACGGTTGTTATGGATCAG 595
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 539 CATTGTCCGAGCAAGAATTGGTCGACTGCAACTTAGTCAACAACGGTTGTTATGGATCAG 598
Query 596 G-ACTAATGGACACAGCTTTCCAGTTCCTTATCAATAACAATGGTCTTGATTCCGAAAAA 654
| || ||||||| |||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 599 GCAC-AATGGACGCAGCTTTCCAGTTCCTTATCAATAACGGTGGTCTTGATTCCGATACA 657
Query 655 GATTATCCATACCAGGGCACTCAAGGCTCCTGTAACCGCAAACAGTCTACCTCAAACAAG 714
|||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||
Sbjct 658 GATTATCCATACCAGGGCTCTCAAGGCTACTGTAACCGCAAAGAGTCTACATCAAACAAG 717
Query 715 GTCATCACGATTGATAGCTACGAGGATGTGCCAGCGAATGATGAGATTTCCTTACAAAAG 774
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATCATCACTATTGATAGCTACGAGGATGTGCCAGCGAATGATGAGATTTCCTTACAAAAG 777
Query 775 GCGGTTGCTCACCAGCCCGTGAGTGTTGGCGTTGACAAAAAATCCCAAGAATTTATGCTC 834
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 778 GCGGTTGCTCACCAGCCCGTGAGTGTCGGCGTTGACAAAAAATCCCAAGAATTTATGCTC 837
Query 835 TATCGATCGTGTATATATAATGGACCATGCGGAACAAATCTTGACCATGCACTTGTTATC 894
||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 838 TATCGATCGGGTATATATAATGGACCATGCGGGACAGATCTTGACCATGCACTTGTTATC 897
Query 895 GTCGGGTACGGTAGTGAGAACGGTCAGGACTATTGGATCGTGAGAAACTCATGGGGAACG 954
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 898 GTTGGGTACGGTAGTGAGAACGGTCAGGACTATTGGATCGTGAGAAACTCATGGGGCACG 957
Query 955 ACTTGGGGAGATGCTGGCTACATTAAGATTGCTCGTAACTTTGAAGATCCAAAAGGTCTC 1014
|| |||||||||||||||||| ||||| ||||||||||||||| ||||| |||| |
Sbjct 958 ACGTGGGGAGATGCTGGCTACGCGAAGATGGCTCGTAACTTTGAATATCCATCAGGTGTA 1017
Query 1015 TGTGGAATTGCGATGCTTGCTTCATATCCTATTAAGAATTCGGCTTCCAATGCATGA 1071
||||| |||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 1018 TGTGGGATTGCGATGCTTGCTTCATATCCTGTCAAGAATTCGGCTTCGAATGCATGA 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5