BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23530.1
Length=1777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945757 jgi|Araly1|945757|scaffold_701986.1 1917 0.0
Ahg329299 jgi|Araly1|329299|fgenesh1_pm.C_scaffold_7001526 407 2e-112
Ahg489963 jgi|Araly1|489963|fgenesh2_kg.6__3097__AT4G11300.1 274 2e-72
> Ahg945757 jgi|Araly1|945757|scaffold_701986.1
Length=1243
Score = 1917 bits (1038), Expect = 0.0
Identities = 1174/1238 (95%), Gaps = 15/1238 (1%)
Strand=Plus/Plus
Query 83 CACACTACACTCTAATGGCTCGTGCGACGGAATTTCAAGGCTCATTCCTGAGTCGAATCA 142
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 7 CACATTACACTCTAATGGCTCGCCCGACGGAATTTCAAGGCTCATTCCTGAGTCGAATCA 66
Query 143 GCATCCGCCGTAATCAGATCGTCTCCATGGATGTCAATCACGAGCAAGAGCTCGAAGAAC 202
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 67 GCATCCGCCGCAATCAGATCGTCTCCATGGACGTCAATCACGAGCACGAGCTCGAAGAAC 126
Query 203 TCGAGTATTTCCAGAAACACGTAGCCGAACGTTTCTCGGATTTAATCACAtctccatctc 262
||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| |
Sbjct 127 TCGAGTATTTCCAGAAACACGTAGCTGAGCGTTTCTCGGAGTTAATAACATCTCCATCGC 186
Query 263 cgc--c--tcct--tcctcctcctct------tccgccgtctctcagccgtctgatccga 310
||| | |||| |||||||||||| ||||||||||||| |||||||||||||
Sbjct 187 CGCATCATTCCTCCTCCTCCTCCTCTGACGCCGCCGCCGTCTCTCACCCGTCTGATCCGA 246
Query 311 ttctctcGATCCCTTGGTTACAGAATCTTCTAGATGTTTTTATGTCCTGTGAAGCAGAGT 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 247 TTCTCTCGATCCCTTGGTTACAGAATCTTCTAGATGTTTTTATGTCCTGTGAAGCTGAGT 306
Query 371 TCAAGGCGGTGTTGAGCACGACCCAGATCTCGAAATCGCCGTCTTTAGAAAGGGTTTTGC 430
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TCAAGGCGGTGTTAAGCACGACCCAGATCTCGAAATCGCCGTCTTTAGAAAGGGTTTTGC 366
Query 431 CGGAAATGCTTGATCGGATTTTAAAGGCGTTAGATTTATGTAACGCCGTCGTTAACGGGA 490
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 367 CGGAAATGCTTGATCGGATTTTAAAGGCGTTGGATTTATGTAACGCCGTCGTTAACGGGA 426
Query 491 TTGATTCCGTTAGACAGAGCCGACGTTTTGCGGAGATAGCTGTCACGGCGCTTAAGCAAC 550
|||||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 427 TTGATTTCGTTAGACAGAGTCGACGTTTAGCGGAGATAGCTGTTACGGCGCTTAAGCAAC 486
Query 551 GGCCGTTATGTGACGGAAGCGTTCGTAGAGCTAAGCGTGCTTTAACAAGTCTCCTCATTG 610
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 487 GGCCGTTATGTGACGGAAGCGTTCGTAGAGCTAAGCGTGCGTTAACAAGTCTCCTCATTG 546
Query 611 GCTTAAACGCTGATGAGAGGAGAGATAGAAACAGTGGAGGAAGTGGTTGCAGTAACCAAA 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 547 GCTTAAACGCTGATGAGAGGAGAGATAGAAACAGTGGAGGAAGTGGTTGCAGTAATCAAC 606
Query 671 GAAGGACGACGTCACGGTCTTGGTCGTTTGGAACGCGTAGCAATGTCACCGGAGGAGGAT 730
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 607 GAAGGACTACGTCACGGTCTTGGTCGTTTGGAACGCGTAGCAACGTCACCGGAGGAGGAT 666
Query 731 TATATGGCCAAGTCGTCAGCAAGAATTGGTCTGCTTCGAAGCAGATTCAGGCGATGGTGG 790
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 667 CATATGGCCAGGTCGTCAGCAAGAATTGGTCTGCGACGAAGCAGATTCAGGCGATGGTGG 726
Query 791 CCAATCTGGTGCTGCCACGTGGAGCTGAAGCTTCCGGACCGGCAATGCCGGTTTACATAA 850
|||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||
Sbjct 727 CCAATCTGGTGCTGCCACGTGGAGCTGAAGCTTCTGGACCGGTGATGCCTGTTTATATAA 786
Query 851 TGAGCAGTGTTATGGTTCTGGTGATGTGGGTGCTAGTGGCGGCGGTTCCTTGTCAGACAA 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 TGAGCAGTGTTATGGTTCTGGTGATGTGGGTGCTAGTGGCGGCGGTTCCTTGTCAGACAA 846
Query 911 GCAGTGTTCTTGTGGCGCCATTGCCGCTTCCAAAACACCAGAATTGGGCTAGCGCCGCTA 970
|||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||||
Sbjct 847 GCAGCGTTCTTGTGGCGCCATTGCCACTTCCGAAACACCAGAGTTGGGCTAGCGCCGCTG 906
Query 971 TGAGTATTCAGGAGAGGATTGGTGAAGAGATAAAACGGAAGGAGAAGCGTTGTGGTGGTG 1030
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 907 TGAATATTCAGGAGAGGATTGGTGAAGAGATGAAACGGAAGGAGAAGCGTTGTGGTGGTG 966
Query 1031 GTGGATTGATGGAGGAGATGCAGAGGATGGAGAAGATTGGGTTATCTTTAATGGAATTCG 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GTGGATTGATGGAGGAGATGCAGAGGATGGAGAAGATTGGGTTATCTTTAATGGAATTCG 1026
Query 1091 CGGAGAGGTTTAGGTTTCCGGCAGATGAAGAAGAGGAGGTGGAAGTTGCGGAGAAGGTGG 1150
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1027 CGGAGAGGTTTAGGTATCCGGCAGATGAAGAAGAGGAGGTGGAAGTTGCGGAAAAGGTGG 1086
Query 1151 ATGAGATGGAGGAGATTTGCCGGCGAATGGAAGTGGGATTGGAGGATTTGCAGAGACAAG 1210
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1087 ATGAGATGGAGGAGATTTGCCGGGGAATGGAAGTAGGATTGGAGGATTTGCAGAGACAAG 1146
Query 1211 TGAGGCAAGTGTTCCATAGATTGGTGAGAAGCAGGATTGAGATTGTTTCACTGCTTGAGC 1270
|||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |
Sbjct 1147 TGAGGCAAGTGTTCCATAGATTGGTGAGAAGCAGGATTGAAATTGTTTCAGTCCTTGATC 1206
Query 1271 AAGCTCCTGCAATCTAATCTTGTAAA--TCCTCAATAA 1306
|||||||||||||||||||| ||||| ||||||||||
Sbjct 1207 AAGCTCCTGCAATCTAATCT-GTAAAAATCCTCAATAA 1243
> Ahg329299 jgi|Araly1|329299|fgenesh1_pm.C_scaffold_7001526
Length=2028
Score = 407 bits (220), Expect = 2e-112
Identities = 241/251 (96%), Gaps = 2/251 (1%)
Strand=Plus/Minus
Query 1473 TCATGTTGCTTTCCTGAATCTGTTCTTCTGTGGCTTTCGTGTCTCTTTTCCTGACTTGTG 1532
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2028 TCATGGTGCTTTCCTGAATCTGTTCTTCTGTGGCTTTCGTGTTTCTTTTCCTGACTTGTG 1969
Query 1533 ATTGTTTCCAGAAGCTTCCCTT-TGTTTTCCGAAGCTTCTGTTACCGGGGCGCTGTGGTC 1591
||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1968 ATTGTTTCCAGAAGCTT-CCTTATGTTTTCCGAAGCTTCTGTTAGCGGGGCGCTGTGGTC 1910
Query 1592 CTGTTCTACTTTGATTAATGTCGGAAGCAGGTGTGTGTTGTTGATATGTTCTCTTTTGCC 1651
||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1909 CTGTTCTACTTCCATTAATGCCGGAAGCAGGTGTGTGTTGTTGATGTGTTCTCTTTTGCC 1850
Query 1652 GTTTGAATTTGTTGCCATCTTGTTTGGCTGTAGTTTCTGATGAAGCTTCTCTGTAATTTC 1711
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 GTTTGAATTTGTTGCCGTCTTGTTTGGCTGTAGTTTCTGATGAAGCTTCTCTGTAATTTC 1790
Query 1712 TTTTCCGCGGC 1722
|||||||||||
Sbjct 1789 TTTTCCGCGGC 1779
> Ahg489963 jgi|Araly1|489963|fgenesh2_kg.6__3097__AT4G11300.1
Length=1284
Score = 274 bits (148), Expect = 2e-72
Identities = 656/885 (74%), Gaps = 99/885 (11%)
Strand=Plus/Plus
Query 394 CAGATCTCGAAATCGCCGTCTTTAGA-AAGGGTTTTGCCGGAAATGCTTGATCGGATT-T 451
|||||||||||| | ||| || || || | || | ||||| ||||||||||||||| |
Sbjct 335 CAGATCTCGAAACCTCCG---TTGGATAA-GCTTGTACCGGAGATGCTTGATCGGATTGT 390
Query 452 TAAAGGCGT-TAGAT-TTATGTAACGCCGTCGTTAACGG-GATTGATTCCGTTAGACAGA 508
|||| || | | ||| || |||| |||||| || ||||| | |||| || || ||||| |
Sbjct 391 TAAA-GC-TCTTGATATT-TGTACCGCCGTAGTCAACGGCG-TTGACTCAGTCAGACAAA 446
Query 509 GCCGA-CGTTTTGCGGAGATAGCTGTCACGGCGCTT-AAGC-AACGGCCGTTATGTGACG 565
|| | |||| ||||||||| ||||| |||||| || || | ||| ||||||| ||||||
Sbjct 447 TCC-AGCGTTGTGCGGAGATTGCTGTTACGGCG-TTGAAACAAAC-GCCGTTAAGTGACG 503
Query 566 GAAGCGTTCGTAGAGCTAAGCGTGCT-TTAACAAGTCTCCTCATTGGC-TTAAACGCTGA 623
|||||||| | |||||||| || ||| || ||||| |||||| || |||||||| ||
Sbjct 504 GAAGCGTTAGGAGAGCTAAACGGGCTCTT-ACAAGCCTCCTC-GCCGCTTTAAACGCCGA 561
Query 624 TGAGAGGAGAGATAGAAACAGTGGAGGAAGTGGTTGCA-GTAACCAAAGAAGGACGAC-G 681
| | | || | ||| | | | |||||||||||| | | || || || ||| | | |
Sbjct 562 TAAAAATAGCGGTAGCAGCGGCGGAGGAAGTGGTAGGAGGT---CATCGACGGA-G-CAG 616
Query 682 TCACGGTCTTGGTCGTTTGGAACG-CGTAGCAATGTCACCGGAGGAGGATTATATGGCCA 740
| |||| ||||||||| || |||||| | | ||||||||| | ||
Sbjct 617 T---GGTC---GTCGTTTGG-TCGACGTAGCGGCGGAAGCGGAGGAGG-----A-GG--G 661
Query 741 AGTCGTCAGCAAGAATTGGTCTGCTTCGAAGCAGATTCAGGCGATGGTGGCCAATCTGGT 800
|| || || ||||||||||| || ||||||||||||| || ||| ||| ||||| ||
Sbjct 662 TGT-GTGAGTAAGAATTGGTCAGCGGCGAAGCAGATTCAAGCAATGACGGCGAATCTCGT 720
Query 801 -GCTGCCACGTGGAGCTGAAGCTTCCGGACCGGCAATGCCGGTTTACATAATGAGCAGTG 859
|| ||||||| | || | || || || | |||| | || |||||||| ||||
Sbjct 721 AGC-GCCACGT-G-GC-GGAG----AGG--CGTC---GCCGATGTATATAATGAGTAGTG 767
Query 860 TTATGGTTCTGGTGATGTGGGTGCTAGTGGCGGCGGTTCCTTGTCAGACAAGCAGTGTTC 919
| ||||| ||||||||||| | |||| | |||||||||||||| ||||| | | |
Sbjct 768 TGATGGTAATGGTGATGTGGACGTTAGTTGTAGCGGTTCCTTGTCAAACAAGTAACG-GC 826
Query 920 TT-GTGGCGCCA-TTGCCGCTT-CC-AAAACACCAGAATTGGGCTAGCGCCGCTATGAGT 975
|| ||| || || ||| || || || | | ||| ||||||||||||||| ||||
Sbjct 827 TTAATGG-TTCATTTACCG-TTGCCGAAGA-ATCAGGTTTGGGCTAGCGCCGCCGTGAGC 883
Query 976 AT-TCAGGAGAGGATTGGTGAAGAGATAAAACGGAAGGAGAAGCGTTGTGGTGGTGGTGG 1034
|| || ||||||||| || |||||||| |||||||||||| | | | ||| | |||||
Sbjct 884 ATCTC-GGAGAGGATCGGAGAAGAGATGAAACGGAAGGAG-A-C---GCGGT-GCGGTGG 936
Query 1035 ATTGATGGAGGAGATGCAGAGGATGGAGAAGATTGGGTT-ATCTTTAATGGAATTC-GCG 1092
||||||||||||||||||||||||||||| ||||||||| | | | |||| ||| | |
Sbjct 937 ATTGATGGAGGAGATGCAGAGGATGGAGAGGATTGGGTTGAAGATGA-TGGAGTTCAGTG 995
Query 1093 GAGAGGTTTAGGTTTCCGGCAGATGAAGAAGAGGAGGTGGAAGTTGCGGAGAAGGTGGAT 1152
|| ||||||||||| | ||| || ||||| ||| | | ||||| | | |||
Sbjct 996 AAG-GGTTTAGGTTT-----A-ATGGGGAGGAGGATGTG-ACG--GCGGA-A-G-TGGCG 1042
Query 1153 GAGATGGAGGAGATTTGCCGGCGAATGGAAG-TGGGATTGGAGGATTTGCAGAGACA-AG 1210
|||||||||||||| |||||| |||||||| |||| ||| ||| || || ||| | ||
Sbjct 1043 GAGATGGAGGAGATATGCCGGAAAATGGAAGATGGGCTTGAAGGGTTA-CAAAGA-AGAG 1100
Query 1211 TGAG-GCAAGTGTTCCATAGATTGGTGAGAAGCAGGATTGAGATT 1254
| || | ||||||| ||||||||||||| |||||| | |||||||
Sbjct 1101 TTAGAG-AAGTGTTTCATAGATTGGTGAAAAGCAGAAGTGAGATT 1144
Score = 110 bits (59), Expect = 5e-23
Identities = 118/145 (81%), Gaps = 9/145 (6%)
Strand=Plus/Plus
Query 96 AATGGC-TCGTGCGACGGAATTTCAAG-GCTCATTCCTGAGTCGAATCAGCATCCGCCGT 153
|||||| || |||||||| || || | || ||| ||||||||||||| ||| ||
Sbjct 64 AATGGCGCCG-GCGACGGAGCATC-AGAGTTCGTTCTTGAGTCGAATCAG---CCGTCGC 118
Query 154 AATCAGATCGTCTCCATGGATGTCAATCACGAGCAAGAGCTCGAAGAACTCGA-GTATTT 212
| |||| | || |||||||| || ||||||||||||||||||||||||||||| | ||||
Sbjct 119 AGTCAGGTTGTTTCCATGGAGGTTAATCACGAGCAAGAGCTCGAAGAACTCGAAG-ATTT 177
Query 213 CCAGAAACACGTAGCCGAACGTTTC 237
|||||||||||||| || ||||||
Sbjct 178 TCAGAAACACGTAGCTGAGCGTTTC 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66696018995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5