BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23540.1
Length=3530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329299 jgi|Araly1|329299|fgenesh1_pm.C_scaffold_7001526 3241 0.0
> Ahg329299 jgi|Araly1|329299|fgenesh1_pm.C_scaffold_7001526
Length=2028
Score = 3241 bits (1755), Expect = 0.0
Identities = 1940/2031 (96%), Gaps = 6/2031 (0%)
Strand=Plus/Plus
Query 1369 ATGAAAAATGCAATCGGAGATACTTCTAGCTCACAAGATCTTCAGCAATGTATTGGGTCT 1428
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1 ATGAAAAATGCAATTGGAGATACTTCTAGCTCACAGGATCTTCAGCAATGCATTGGGTCT 60
Query 1429 GCAGTGGTGGCAATGGGACCAGTAAGGCTACTGACACTTCTTCCTATCACTCTTCATGCT 1488
|||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 GCAGTGGTTGCCATGGGACCAGTAAAGCTACTGACACTTCTTCCTATCACTCTTCATGCT 120
Query 1489 GAGAGTCACTCATGCACAAATGCTTGGCTAATTCCTATCTTAAGAAAATATATCATTGGA 1548
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 121 GAGAGTCACTCATGCACAAATGCTTGGCTAATTCCTATCTTAAGAAAATGTATAATTGGA 180
Query 1549 GCATCTCTTGCGTATTATGTTGA-CAACATTGTTCCGCTTGCAAAATCACTGATGCTTGC 1607
||||||||| ||||||||||||| | |||||||||||||||||||||| ||||||||||
Sbjct 181 GCATCTCTTTCGTATTATGTTGATC-GCATTGTTCCGCTTGCAAAATCAGTGATGCTTGC 239
Query 1608 TTCTAAAGGAGCTAAAAAGTCAACTCACGGCAAAGAGTTGCGGGCTTGTGGTCATGAGCT 1667
||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 240 TTCGAAAGGAGCTAAAAAGTCAGCTCCCGGCAAAGAGTTGCGGGCTTGTGGTCATGAGCT 299
Query 1668 TCTGAGACTGTTACCTGCCTTTTGTAACTATCCAGTTGATGTGGCCAACAAA-TTTGGAT 1726
||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 300 TCTGAGACTGTTACCTGCCTTTTGTAACTATCCAGTTGATGTGCCCAA-AAATTTTGGAT 358
Query 1727 CGTTAGCCAAACTGATGGTTAAATTTATCAAAAAGAAATCTTTCATGCATGAAGCTGTGG 1786
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||
Sbjct 359 CGTTAGCCAAACTGATGGTTGAATTTATAAAAAATAAATCTTTCATGCATGAAGCTGTGG 418
Query 1787 CTCTTTCTCTGCAGATGCTTGTAAATCAGAATAAAGGAATGCCTAAGCCCAGTACAGATA 1846
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 419 CTCTTTCTCTACAGATGCTTGTAAATCAGAATAAAAGAATGCCTAAGCCCAGTACAGATA 478
Query 1847 TGGGAGAAGCAAAAGCCATAAGCGAAGAAGATGCAACAACAGAGCTTGAAAGAGGATTTC 1906
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 479 TGGGAGAAGCAAAAGCCATAAGCGAAGAAGATGCAACAACTGAGCTCGAAAGTGGATTTC 538
Query 1907 ACTATTCGAAGAAAGCTTCAACGAAAAACATGAAAGCTTTGGCATCAAGCTCGACAGAGT 1966
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 539 ACTATTCGAAGAAAGCTTCAACTAAAAACATGAAGGCTTTGGCATCAAGCTCGACAGAGT 598
Query 1967 TGCTTCAAACTCTTGTTGATGTTTTCACAGTTTCAGGCACAGAGATCAGTGCAGACTTTA 2026
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 599 TGCTTCAAACTCTTGTTGATGTATTCACTGTTTCAGGCACAGAGATCAGTGCAGACTTTA 658
Query 2027 AGGCTGCAATTGGATGCTTAGCTTCTACTCTGGATTCGTCAGTTAGGAAAAAGATTCTGA 2086
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 659 AGGCTGCAATTGGATGCTTAGCTTCTACTCTGGATTCGTCAGTTAGGAAAAAGATTCTAA 718
Query 2087 TATCCTTGCTAAATAAGTTTGATCCTGCCGGTGAAAGCGAGACTGAGGGGCAGGTCAATC 2146
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 719 TATCCTTGCTAAATAAGTTTGATCCTGCTGGTGAAAACGAGACTGAGGGGCAGGTCAATC 778
Query 2147 AATCGAATGATTCTGTCGATGAAGAAAAAGAAAACTGCAGTTCCACAAAGACACAGTTAA 2206
|||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 779 AATCGAATGATTCTATGGATGAAGAAAAAGAAAAGTGCAGTGCCACAAAGACACAGTTAA 838
Query 2207 AGAGGAGTGCTGTGCTGGATCTTGCATCTTCATTTGTTGAAGGAGCCAAGGAAGATCTTA 2266
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGAGGAGTGCTGTGTTGGGTCTTGCATCTTCATTTGTTGAAGGAGCCAAGGAAGATCTTA 898
Query 2267 TTGAGTTGATTTATAATCTTGTTCGCCAAAGTTTTCAGGCCACCGACGAGGCTGATCTTT 2326
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 899 TTGAGTTGATTTATAATCTTGTTCGCCAAAGTTTTCAGGCCACCAACGAGGCTGATCTTC 958
Query 2327 ATGGGGCATATGATACTCTGAGCAGAGTTCTACAGGAACATGGTTGGTTTTGTGCATCTC 2386
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 959 GTGGGGCATATGATACTCTGAGCAGAGTTCTAGAGGAACATGGTTGGTTTTGTGCATCTC 1018
Query 2387 ATTTTGCAGAGGTGATAGAGATGTTACTCAGCCATAAAACTCCAGAGGATGCGGCTTCTT 2446
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1019 ATTTTGCAGAAGTAATAGAGATGTTACTCAGCCATAAAACTCCAGAGGATGCGGCGTCTT 1078
Query 2447 CTAGAAGCCGATTTGCATGTCTCCACGTCCTAATGGCTCATGGAATTCAGTCAAGCACCG 2506
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1079 CTAGAAGCCGATTTGCATGTCTCCACGTTCTAATGGCTCACGGAATTCAGTCAAGCACCG 1138
Query 2507 AGGAGGAGAATGAGAAGGCTTTCCTTATTCTGAACGAGATGATCCTGACACTTAAAGAGG 2566
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1139 AGGAAGAGAATGAGAAGGCTTTCCTTATTCTGAACGAGATGATCTTGACACTTAAAGATG 1198
Query 2567 GGAAAGAAGAACATAGGAAAGCAGCTTGTGATACACTGGTTATGGTGTATACCACCCTGA 2626
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1199 GGAAAGAAGAACATAGGAAAGCAGCTTGTGATGCACTGGTTATGGTGTATACCACCCTGA 1258
Query 2627 AAAATTCATCATCTATCACCAGTGATGAACTTTGTCCCAAATTGATTAACATGATAACGG 2686
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1259 AAAATTCATCATCTATCACCAGTGATGAACTTTGTCTTAAATTGATTAACATGATAACGG 1318
Query 2687 GTTATATTTCTGGAACGTCGCCGCACATAAGGAGTGGAGCAGTGTCTGCATTATCTGCCT 2746
|||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1319 GTTATATTCCTGGATCGTCTCCGCACATAAGGAGTGGAGCAGTGTCTGCATTATCTGTCT 1378
Query 2747 TGGTATACAAAGACCCTGAGATATGCCTATCGTCACCTGAGCTTCTTTCATCTGTTTTAT 2806
|| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1379 TGATATACAAAGACCCTGAGATCTGCCTATCTTCACCTGAGCTTCTTTCATCTGTTTTAT 1438
Query 2807 CATTGCTTCACACTAAATCCATTGAGATTATAAAAGCTGTTTTAGGTTTTGTGAAAGTTT 2866
||||||||||||| ||||| || ||||| |||||||||||||| ||||||||||||||||
Sbjct 1439 CATTGCTTCACACCAAATCAATCGAGATAATAAAAGCTGTTTTGGGTTTTGTGAAAGTTT 1498
Query 2867 TAGTCTCAACATCGCAAGCTCAGGACTTGCACAGTCTACTGCAGAACCTCTTATACGAAA 2926
||||||| ||||| ||||| ||||||||||| |||||| | |||||||||||||||||||
Sbjct 1499 TAGTCTCGACATCACAAGCCCAGGACTTGCAGAGTCTATTACAGAACCTCTTATACGAAA 1558
Query 2927 TTCTCCCCTGGTCGTCTGTTTCAAGACATTATTTTAAGTCGAAGGTAACGATCATAGTTG 2986
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1559 TTCTCCCTTGGTCGTCTGTTTCAAGACATTATTTTAAGTCAAAGGTAACGATCATAGTTG 1618
Query 2987 AGATTATGGTAAGGAAGTGCGGCACCCGCGCAGTCCAGTTAGCCACACCAGACAAGCACA 3046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 AGATTATGGTAAGGAAGTGCGGCACCCGCGCAGTCCAGTTAGCCACACCAGACAAGCACA 1678
Query 3047 AGAGTTTCATCGAGACAGTTTTAGAGAACCGTTCGGGGAAATCAAAAGACAAAGAAGAGA 3106
| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 AAAATTTCATCCAGACAGTTTTAGAGAACCGTTCGGGGAAATCAAAAGACAAAGAAGAGA 1738
Query 3107 CCAATGAGTCACAGACTACATCCATCGATCCATCCAGAGGGCCGCGGAAAAGAAATTACA 3166
||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1739 CCAATGATTCACAGACTACATCCATCGATTCATCCAGAGAGCCGCGGAAAAGAAATTACA 1798
Query 3167 GAGAAGCTTCATCAGAAACTACAGCCAAACAAGATGGCAACAAATTCAAACGGCAAAAGA 3226
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1799 GAGAAGCTTCATCAGAAACTACAGCCAAACAAGACGGCAACAAATTCAAACGGCAAAAGA 1858
Query 3227 GAACATATCAACAACACACACCTGCTTCCGACATTAATCAAAGTAGAACAGGACCACAGC 3286
||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1859 GAACACATCAACAACACACACCTGCTTCCGGCATTAATGGAAGTAGAACAGGACCACAGC 1918
Query 3287 GCCCCGGTAACAGAAGCTTCGGAAAACA-AAGGGAAGCTTCTGGAAACAATCACAAGTCA 3345
|||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1919 GCCCCGCTAACAGAAGCTTCGGAAAACATAAGG-AAGCTTCTGGAAACAATCACAAGTCA 1977
Query 3346 GGAAAAGAGACACGAAAGCCACAGAAGAACAGATTCAGGAAAGCAACATGA 3396
|||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1978 GGAAAAGAAACACGAAAGCCACAGAAGAACAGATTCAGGAAAGCACCATGA 2028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133315678219
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5