BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23550.1
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492514 jgi|Araly1|492514|fgenesh2_kg.7__1947__AT4G23550.1 1338 0.0
> Ahg492514 jgi|Araly1|492514|fgenesh2_kg.7__1947__AT4G23550.1
Length=926
Score = 1338 bits (724), Expect = 0.0
Identities = 867/934 (93%), Gaps = 17/934 (2%)
Strand=Plus/Plus
Query 1 AGGTGGCTTATATGGACGAAGGAGACCTAGAAGCAATAGTCAGAGGCTACTCCGGCTCCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGGTGGCTTATATGGACGAAGGAGACCTAGAAGCAATAGTCAGAGGCTACTCCGGCTCCG 60
Query 61 G-AGACGCGTTTTCCGGCGAAAGTTCCGGTACGTTTTCACCTTCGTTTTGCCTACCGATG 119
| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 61 GAAG-CGCGTTTTCCGGCGAAAGTTCCGGTGGGTTTTCACCTTCGTTTTGCCTTCCGATG 119
Query 120 GAGACGTCTAGTTTCTACGAACCGGAGATGGAGACAAGTGGCTTAGATGAGCTCGGTGAA 179
||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||||
Sbjct 120 GAGACGTCTAGTTTCTACGAACCGGAGATAGAGACAACCGGTTTAGACGAGCTCGGTGAA 179
Query 180 CTTTACAAACCCTTTTACCCTTTCTCCACACAAACGATCCTCACAAGCTCGGTCTCTCTC 239
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 CTCTACAAACCCTTTTACCCTTTCTCCACACAAACGATCCTCACGAGCTCGGTCTCTCTC 239
Query 240 CCTGAAGATTCAA-AACCTTTCCGAGATGACAAGAAACAACGATCACATGGTTGTCTTTT 298
|| |||||||||| || |||||||||||| |||||||||||||| |||||||||||| |
Sbjct 240 CCCGAAGATTCAAGAA-GTTTCCGAGATGATAAGAAACAACGATCTCATGGTTGTCTTCT 298
Query 299 ATCCAACGGATCAAGAGCTGATCATATCCGAATTTCAGAATCCAAATCAAAGAAAAGCAA 358
||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 299 ATCCAACGGATCAAGAGTTGATCATATCCGAATCCCAGAATCCAAATCAAAGAAGAGCAA 358
Query 359 GAAGAATCAACAGAAGAGAGTTGTTGAGCAAGTGAAAGAAGAGAATCTGTTGTCGGACGC 418
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 359 GAAGAATCAACAGAAGAGAGTTGTTGAGCAAGTGAAGGAAGAGAATCTGTTGTCGGACGC 418
Query 419 ATGGGCGTGGCGTAAATACGGGCAGAAACCCATCAAAGGATCTCCATACCCAAGGAGTTA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATGGGCGTGGCGTAAATACGGGCAGAAACCCATCAAAGGATCTCCATACCCAAGGAGTTA 478
Query 479 TTACAGATGCAGTAGCTCAAAAGGGTGTTTGGCAAGAAAACAAGTCGAAAGAAATCCTCA 538
|||||| || |||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 479 TTACAGGTGTAGTAGCTCGAAAGGGTGTTTGGCAAGAAAACAAGTTGAAAGGAATCCTCA 538
Query 539 AAACCCGGAGAAATTCACCATAACATACACTAATGAGCACAATCATGAACTACCAACCCG 598
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 539 AAACCCGGAGAAATTCACCATAACATACACTAATGAGCACAATCACGAATTACCAACCCG 598
Query 599 GAGAAACTCATTAGCCGGTTCGACTCGAGcaaaaacttcccaacccaaaccaa-ccttaa 657
|||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||||
Sbjct 599 GAGAAACTCATTAGCCGGTTCGACTCGAGCCAAAACTTCCCAAACCAAAC-AATCCTTAA 657
Query 658 ccaaaaaatccgaaaaaGAAGT--T-GTTTCTTC-CCCTACAAGTAATCCTATGATCCCA 713
|||||||| | | ||||||||| | |||||||| ||| ||||||||||| |||||| ||
Sbjct 658 CCAAAAAAACTGGAAAAGAAGTGGTTGTTTCTTCTCCC-ACAAGTAATCCCATGATCGCA 716
Query 714 TCCGCTGATGAATCTTCTGTTGCGGTTCAAGAAATGAGCGTTGCGGAAACGAGTACGCAC 773
||||| |||||||||||||||||| ||||||||||| |||||| |||| ||||| |||
Sbjct 717 TCCGCCGATGAATCTTCTGTTGCGATTCAAGAAATGGGCGTTGTAGAAATTAGTACCCAC 776
Query 774 CAAGCGGCTGGAGCAATCGAGGGCCGCCGCTTGAGTAACGGTTTACCATCGGATTTGATG 833
||||| ||||||| |||| ||||| | ||||||||||||||||||||||||||||
Sbjct 777 CAAGCAGCTGGAGAAATCCAGGGCA-----T-GAGTAACGGTTTACCATCGGATTTGATG 830
Query 834 TCCGGGAGCGGAACTTTTCCAAGTTTTACCGGTGACTTCGATGAACTATTGAATAGCCAA 893
|| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 831 TCGGGGAGCGGAACTTTTCCGAGTTTTACCGGTGACTTCGATGAACTACTGAATAGCCAA 890
Query 894 GAGTTCTTCAGTGGGTATTTATGGAATTACTAGA 927
||||||||||||||||| ||||||||||||||||
Sbjct 891 GAGTTCTTCAGTGGGTACTTATGGAATTACTAGA 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34653731553
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5