BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23560.1
Length=1812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492512 jgi|Araly1|492512|fgenesh2_kg.7__1945__AT4G23560.1 2464 0.0
Ahg327156 jgi|Araly1|327156|fgenesh1_pm.C_scaffold_6002376 2089 0.0
> Ahg492512 jgi|Araly1|492512|fgenesh2_kg.7__1945__AT4G23560.1
Length=1689
Score = 2464 bits (1334), Expect = 0.0
Identities = 1575/1692 (93%), Gaps = 13/1692 (1%)
Strand=Plus/Plus
Query 1 GCAAAATCAAGAAACTCTCAAAACCCATTTCAAAAGAGAAACACTTCTTTAAAAAGTTTT 60
|||||||||| |||| ||| |||||||||| |||||||||||| ||||| |||||||| |
Sbjct 1 GCAAAATCAAAAAACACTCGAAACCCATTTAAAAAGAGAAACATTTCTTGAAAAAGTTCT 60
Query 61 ATTAATAAATAATGGGAAAGCTCTTGGTGTTAATGTTAGTTGGGATGTTCTTGGCTTTTG 120
| |||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct 61 AGCAATAAATAATGGGAAAGCTCTTGGTGTTAATGTTAGTTATGATGTTTTTGGCTTTCG 120
Query 121 AAAGCTTGGAAGCTCTTGAATATGGAGATGCACTTAACAAGTCAATCTTGTTCTTTGAAG 180
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 121 AAAGCTTGGAAGCTCTTGATTACGGAGATGCACTAAACAAGTCAATCTTGTTCTTTGAAG 180
Query 181 GCCAACGATCCGGTAAACTCCCGACTAACCAACGAGTTAAATGGCGAGCCGATTCTGCCC 240
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 GCCAAAGATCCGGTAAACTCCCGACTAACCAACGGGTTAAATGGCGAGCCGATTCTGCCC 240
Query 241 TCTCTGATGGTTCACTTGCTAATGTGAATTTAATTGGAGGATATTACGATGCTGGTGACA 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTCTGATGGTTCACTAGCTAATGTGAATTTAATTGGAGGATATTACGATGCTGGTGACA 300
Query 301 ATGTAAAATTTGTGTGGCCAATGTCATTTACCACAACCTTGTTAAGTTGGGCTGCAATTG 360
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 301 ATGTAAAATTTGTGTGGCCAATGTCATTTACCACAACCTTGTTGAGTTGGGCAGCAATTG 360
Query 361 AATACCAAAATGAGATTTCTTCCGTTAACCAGCTCGGTTATCTCCGGTCTACTATCAAAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AATACCAAAATGAGATTTCTTCCGTTAACCAGCTCGGTTATCTCCGGTCTACTATCAAAT 420
Query 421 GGGGAACCGATTTCATCCTACGCGCTCATACATCTCCCAACATGCTATATACCCAGGTGG 480
|||| |||||||| ||||| ||||||||| | || |||| |||||||||||| |||||||
Sbjct 421 GGGGTACCGATTTTATCCTCCGCGCTCATGCTTCGCCCACCATGCTATATACACAGGTGG 480
Query 481 GAGATGGTAATTCAGATCATAGTTGTTGGGAGAGGCCAGAAGATATGGACACATCAAGAA 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 GAGATGGGAATTCAGATCATAGTTGTTGGGAGAGGCCAGAAGATATGGACACACCAAGAA 540
Query 541 CTCTCTACAGTATCTCTTCCTCTTCCCCTGGTTCTGAAGCCGCGGGTGAAGCCGCAGCCG 600
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 541 CTCTCTACAGTATCTCTTCCTCTTCCCCCGGTTCCGAAGCCGCGGGTGAAGCAGCAGCCG 600
Query 601 CTCTTGCAGCGGCCTCACTTGTTTTCAAATCGGTCGATTCTACTTATTCATCCACACTAT 660
||||||| || |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 601 CTCTTGCCGCAGCCTCACTTGTTTTCAAATCGGTCGATTCTACTTATTCATCCACGCT-T 659
Query 661 -TAAACCATGCAAAAACCCTATTTGAATTTGCTGATAAGTACAGAGGTTCTTATCAAGCA 719
||| |||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 660 CTAAGCCATGCTAAATCCCTATTTGAATTTGCTGATAAGTATAGAGGTTCTTACCAAGCA 719
Query 720 TCTTGCCCTTTCTACTGCTCCTACTCCGGCTACCAGGATGAATTATTATGGGCTGCGGCT 779
|||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| ||
Sbjct 720 TCTTGCCCTTTCTACTGCTCATACTCTGGCTACCAGGATGAACTATTATGGGCTGCTACT 779
Query 780 TGGCTATATAAAGCAACAGGAGATAAAATTTACATAAATTATGTTATAAGCAATAAAGAT 839
||| |||| |||||||||||||| || | |||||||||||||||||||||||||||||||
Sbjct 780 TGGTTATACAAAGCAACAGGAGAGAAGAGTTACATAAATTATGTTATAAGCAATAAAGAT 839
Query 840 TGGAGCCAAGCCGTTAATGAATTCAGTTGGGACAACAAATTCGTCGGCGCTCAAGCTTTA 899
|||||||||||||| ||||||||||| |||||||||||||||| ||| ||||| |||||
Sbjct 840 TGGAGCCAAGCCGTGAATGAATTCAGCTGGGACAACAAATTCGCCGGTGCTCAGGCTTTG 899
Query 900 CTCGTATCGGAGTTTTACAACGGGGCAAATGACTTGGCAAAATTTAAGTCCGATGTTGAA 959
|||| |||||||||||| || ||| ||||||||||||||||||||||| |||||||||||
Sbjct 900 CTCGCATCGGAGTTTTATAATGGGACAAATGACTTGGCAAAATTTAAGACCGATGTTGAA 959
Query 960 TCCTTCGTCTGTGCAATGATGCCAGGAAGTAGCTCTCAACAAATTAAACCAACTCCTGGT 1019
|| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 960 TCATTCGTCTGTGCATTGATGCCAGGAAGTAGCTCTCAACAAATTAAGCCAACTCCTGGT 1019
Query 1020 GGCCTTTTGTTTATTAGAGACAGTAGCAACTTACAATATGTAACAACGGCTACAACTGTT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGCCTTTTGTTTATTAGAGACAGTAGCAACTTACAATATGTAACAACGGCTACAACTGTT 1079
Query 1080 TTGTTCCATTACTCAAAAACTCTTACCAAAGCCGGGGTTGGTTCAATCCAGTGCGGTTCG 1139
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1080 TTGTTCCATTACTCAAAAACTCTTACCAAAGCCCGGGTTGGTTCAATCCAGTGTGGTTCG 1139
Query 1140 ACCAAGTTCACCGTATCTCAAATTCGAAATTTTGCCAAATCACAGGTTGATTATATCCTT 1199
||| |||||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1140 ACCCAGTTCACCCTATCTCAAATTCGAAATTTCGCCAAATCACAGGTCGATTACATCCTT 1199
Query 1200 GGAAATAATCCAATGAAAATGTCTTACATGGTCGGATTTGGGACAAAGTATCC-AACACA 1258
|||||||||||||||||||||||||||||||| |||||||| || |||| ||| ||||||
Sbjct 1200 GGAAATAATCCAATGAAAATGTCTTACATGGTTGGATTTGGAACCAAGT-TCCCAACACA 1258
Query 1259 ACCTCATCATAGAGGCTCATCTTTACCATCGATCCAATCTAAACCGGAGAAAATTGACTG 1318
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1259 ACCTCATCATAGAGGCTCATCTTTACCGTCGATCCAATCTAAACCGGAGAAAATCGACTG 1318
Query 1319 TAATGGAGGATATTCATACTACAATTCTGATACACCAAACCCGAATGTGCATATTGGTGC 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1319 CAATGGAGGATATTCATACTACAATTCTGATACACCAAACCCGAATGTGCATACCGGCGC 1378
Query 1379 AATTGTGGGCGGACCGAATTCATCCGATCAGTATAGCGACAAAAAATCAGATTACTCTCA 1438
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1379 AATTGTGGGCGGACCGAATTCATCCGACCAGTATAGCGACAAAAAATCAGATTACTCTCA 1438
Query 1439 TGCTGAGCCCACAACTTACATCAACGCCGCCTTTATTGGACCTGTTGCAGCTCTAATCAG 1498
||| ||||||||||||||||||||||| ||||||||||| || || || ||||| |||||
Sbjct 1439 TGCAGAGCCCACAACTTACATCAACGCAGCCTTTATTGGGCCCGTCGCTGCTCTGATCAG 1498
Query 1499 TTCTTCCGGATAAACTCACGTTTAGATT-GGTTGTGGGGAAACAAATATTAGCAAAGAAG 1557
|||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||
Sbjct 1499 TTCTTCCGGATAAACTCACGTTTATATTTGGTTGTGTGGAAACAAATATTAGCAAAGAAG 1558
Query 1558 AATCATTACT--CATCAACA--AACTATTATGACTACAAACTTAAATAATTAGTCA--GG 1611
||| |||||| | ||| || |||||||| |||||||||||| ||||||||||| ||
Sbjct 1559 AATGATTACTAGC-TCAGCAGCAACTATTAAGACTACAAACTTGAATAATTAGTCGTTGG 1617
Query 1612 -GGATGTATCGTTTGCTTTAAacatatatctctatatagatgtatatacctacacacata 1670
||||||||| ||||||||||||||||||| |||| |||||||||||||||||| |||
Sbjct 1618 AGGATGTATCACTTGCTTTAAACATATATCTTTATACAGATGTATATACCTACACTTATA 1677
Query 1671 cacacactcaca 1682
|||||| |||||
Sbjct 1678 CACACATTCACA 1689
> Ahg327156 jgi|Araly1|327156|fgenesh1_pm.C_scaffold_6002376
Length=1452
Score = 2089 bits (1131), Expect = 0.0
Identities = 1351/1458 (93%), Gaps = 12/1458 (1%)
Strand=Plus/Plus
Query 72 ATGGGAAAGCTCTTGGTGTTAATGTTAGTTGGGATGTTCTTGGCTTTTGAAAGCTTGGAA 131
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGCAAGCTCTTGGTGTTAATGTTAGTTGGGATGTTCTTGGCTTTTGAAAGCTTGGAA 60
Query 132 GCTCTTGAATATGGAGATGCACTTAACAAGTCAATCTTGTTCTTTGAAGGCCAACGATCC 191
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 61 GCTCTTGACTATGGAGATGCACTAAACAAGTCAATCTTGTTCTTTGAAGGCCAAAGATCC 120
Query 192 GGTAAACTCCCGACTAACCAACGAGTTAAATGGCGAGCCGATTCTGCCCTCTCTGATGGT 251
||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||
Sbjct 121 GGTAAACTCCCGACTAACCAACGGGTTAAATGGCGTGCTGATTCTGCCCTCTCTGACGGT 180
Query 252 TCACT-TGCTAATGTGAATTTAATTGGAGGATATTACGATGCTGGTGACAATGTAAAATT 310
|| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCA-TCAGCTAATGTGAATTTGATTGGAGGATATTACGATGCTGGTGACAATGTAAAATT 239
Query 311 TGTGTGGCCAATGTCATTTACCACAACCTTGTTAAGTTGGGCTGCAATTGAATACCAAAA 370
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 240 TGTGTGGCCAATGTCATTTACCACAACCTTATTGAGTTGGGCTGCAATTGAATACCAAAA 299
Query 371 TGAGATTTCTTCCGTTAACCAGCTCGGTTATCTCCGGTCTACTATCAAATGGGGAACCGA 430
||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |||| |
Sbjct 300 TGAGATTACTTCCGTAAACCAGCTTGGTTATCTCCGGTCTACTATCAAATGGGCAACCAA 359
Query 431 TTTCATCCTACGCGCTCATACATCTCCCAACATGCTATATACCCAGGTGGGAGATGGTAA 490
||| ||||| ||||||||||| || ||||||||||||||||| |||||||||||||| ||
Sbjct 360 TTTTATCCTCCGCGCTCATACTTCGCCCAACATGCTATATACTCAGGTGGGAGATGGAAA 419
Query 491 TTCAGATCATAGTTGTTGGGAGAGGCCAGAAGATATGGACACATCAAGAACTCTCTACAG 550
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 420 TTCAGATCATAGTTGTTGGGAGAGGCCAGAAGATATGGACACACCTAGAACTCTCTACAG 479
Query 551 TATCTCTTCCTCTTCCCCTGGTTCTGAAGCCGCGGGTGAAGCCGCAGCCGCTCTTGCAGC 610
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 480 TATCTCTTCCTCTTCCCCCGGTTCCGAAGCCGCGGGTGAAGCCGCAGCCGCTCTTGCCGC 539
Query 611 GGCCTCACTTGTTTTCAAATCGGTCGATTCTACTTATTCATCCACA-CTATTAAACCATG 669
||||||||||||||||||| |||||||||||||||||||||||| | || | |||||||
Sbjct 540 GGCCTCACTTGTTTTCAAACCGGTCGATTCTACTTATTCATCCA-AGTTACTCAACCATG 598
Query 670 CAAAAACCCTATTTGAATTTGCTGATAAGTACAGAGGTTCTTATCAAGCATCTTGCCCTT 729
| ||| ||||||| |||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 599 CTAAATCCCTATTCGAATTTGCGGATAAGTACAGAGGTTCTTACCAAGCATCTTGCCCCT 658
Query 730 TCTACTGCTC-CTACTCCGGCTACCAGGATGAA-TTATTATGGGCTGCGGCTTGGCTATA 787
|||||||||| | |||| ||||| ||||||||| || || ||||||||||||||| ||||
Sbjct 659 TCTACTGCTCAC-ACTCAGGCTATCAGGATGAACTT-TTGTGGGCTGCGGCTTGGTTATA 716
Query 788 TAAAGCAACAGGAGATAAA-ATTTACATAAATTATGTTATAAGCAATAAAGATTGGAGCC 846
||||||||||| || ||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 717 CAAAGCAACAGGGGA-AAAGAGTTACTTAAATTATGTTATAAGCAATAAAGATTGGAGCC 775
Query 847 AAGCCGTTAATGAATTCAGTTGGGACAACAAATTCGTCGGCGCTCAAGCTTTACTCGTAT 906
||||||| |||||||| || |||||||||||||||| ||| | |||||||||||||| ||
Sbjct 776 AAGCCGTGAATGAATTTAGCTGGGACAACAAATTCGCCGGTGTTCAAGCTTTACTCGCAT 835
Query 907 CGGAGTTTTACAACGGGGCAAATGACTTGGCAAAATTTAAGTCCGATGTTGAATCCTTCG 966
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||
Sbjct 836 CGGAGTTTTACAACGGGGCAAATGACTTGGAAAAATTTAAGACCGATGTTGAATCATTCG 895
Query 967 TCTGTGCAATGATGCCAGGAAGTAGCTCTCAACAAATTAAACCAACTCCTGGTGGCCTTT 1026
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 896 TCTGTGCATTGATGCCAGGAAGTAGCTCTCAACAAATTAAGCCAACTCCTGGTGGCATTT 955
Query 1027 TGTTTATTAGAGACAGTAGCAACTTACAATATGTAACAACGGCTACAACTGTTTTGTTCC 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TGTTTATTAGAGACAGTAGCAACTTACAATATGTAACAACGGCTACAACTGTTTTGTTCC 1015
Query 1087 ATTACTCAAAAACTCTTACCAAAGCCGGGGTTGGTTCAATCCAGTGCGGTTCGACCAAGT 1146
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||
Sbjct 1016 ATTACTCAAAAACTCTTACCAAAGCCCGGGTTGGTTCAATCCAATGCGGTTCGACCCAGT 1075
Query 1147 TCACCGTATCTCAAATTCGAAATTTTGCCAAATCACAGGTTGATTATATCCTTGGAAATA 1206
|||||| |||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 1076 TCACCGCATCTCAAATTCGAAATTTCGCCAAATCACAGGTTGATTACATTCTTGGAAATA 1135
Query 1207 ATCCAATGAAAATGTCTTACATGGTCGGATTTGGGACAAAGTATCCAACACAACCTCATC 1266
||||| ||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||
Sbjct 1136 ATCCATTGAAAATGTCTTACATGGTTGGATTTGGAACAAAGTACCCAACTCAACCTCATC 1195
Query 1267 ATAGAGGCTCATCTTTACCATCGATCCAATCTAAACCGGAGAAAATTGACTGTAATGGAG 1326
|||||||||| || ||||| || ||||||||||||||||||||||| ||||| |||||||
Sbjct 1196 ATAGAGGCTCGTCATTACCGTCAATCCAATCTAAACCGGAGAAAATCGACTGCAATGGAG 1255
Query 1327 GATATTCATACTACAATTCTGATACACCAAACCCGAATGTGCATATTGGTGCAATTGTGG 1386
|||||||||||||||||||||||||||| ||||||||||| |||| |||||||| || |
Sbjct 1256 GATATTCATACTACAATTCTGATACACCGAACCCGAATGTCCATACCGGTGCAATCGTTG 1315
Query 1387 GCGGACCGAATTCATCCGATCAGTATAGCGACAAAA-AATCAGATTACTCTCATGCTGAG 1445
||||||||||||||||||| |||||||||||||||| || ||||||| |||||||| |||
Sbjct 1316 GCGGACCGAATTCATCCGACCAGTATAGCGACAAAAGAA-CAGATTATTCTCATGCAGAG 1374
Query 1446 CCCACAACTTACATCAACGCCGCCTTTATTGGACCTGTTGCAGCTCTAATCAGTTCTTCC 1505
|||||||||||||||||||||||||||||||| || || || ||||| ||||||||||||
Sbjct 1375 CCCACAACTTACATCAACGCCGCCTTTATTGGGCCCGTCGCTGCTCTCATCAGTTCTTCC 1434
Query 1506 GGATAAACTCACGTTTAG 1523
|| |||| |||||||||
Sbjct 1435 CGACAAACCCACGTTTAG 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68029177570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5