BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23570.3
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492509 jgi|Araly1|492509|fgenesh2_kg.7__1942__AT4G23570.3 1925 0.0
> Ahg492509 jgi|Araly1|492509|fgenesh2_kg.7__1942__AT4G23570.3
Length=1264
Score = 1925 bits (1042), Expect = 0.0
Identities = 1207/1284 (94%), Gaps = 21/1284 (2%)
Strand=Plus/Plus
Query 137 GATGGCGAAGGAGCTTGCTGATAAGGCTAAAGAGGCTTTCGTAGACGATGACTTCGATGT 196
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATGGCTAAGGAACTTGCTGATAAGGCTAAAGAGGCTTTCGTAGACGATGACTTCGATGT 60
Query 197 TGCTGTTGACTTGTACTCCAAAGCCATTGACTTGGATCCTAATTGCGCTGAGTTCTTCGC 256
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGCTGTTGACTTATACTCCAAAGCCATTGACTTGGATCCTAATTGCGCTGAGTTCTTCGC 120
Query 257 TGATCGTGCTCAGGCCTATATCAAACTCGAAAGCTTCACTGCAGAGGCCGTGGCAGATGC 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGATCGTGCTCAGGCCTATATCAAACTCGAAAGCTTCACTGCAGAGGCCGTGGCAGATGC 180
Query 317 GAACAAAGCAATTGAGTTGGATCCTTCATTGACCAAAGCTTACCTAAGAAAAGGAACTGC 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAACAAAGCAATTGAGTTGGATCCTTCATTGACCAAAGCTTACCTAAGAAAAGGAACTGC 240
Query 377 CTGTATGAAGCTTGAAGAGTATCGGACTGCTAAAACAGCTCTTGAAAAGGGTGCCTCTAT 436
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 241 CTGTATGAAGCTTGAGGAGTATCGGACTGCTAAAACAGCTCTTGAAAAAGGTGCTTCTAT 300
Query 437 CACGCCGAGTGAATCCAAATTTAAGAAGTTGATAGATGAATGCAATTTTCTAATCACAGA 496
| | ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 301 CGCACCGAGTGAATCCAAATTTAAGAAGTTGATAGATGAATGCGATTTTCAAATCACAGA 360
Query 497 AGAAGAGAAAGATTTGGTTCAACCGGTGCCTTCGACTTTGCCTTCAAGTGTGA-CAGCAC 555
||| ||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 361 AGAGGAGAAAGATTTGGTTCAACCGGTGCCTTCGACTTTGCCTTCAAGT-TCAACAGCAC 419
Query 556 CACCAGTATCTGAACTTGATGTCACCCCTACAGCCAAGTACAGGCACGAGTACTACCAAA 615
|||||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||||
Sbjct 420 CACCAGTATCTGAACTTGATCTTACCCCTGCAGCCAAGTACAGACACGAGTACTACCAAA 479
Query 616 AGCCAGAGGAAGTTGTGGTAACTGTTTTTGCAAAAGGAATACCCAAGCAGAATGTTAACA 675
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 AGCCAGAAGAAGTTGTGGTAACTATTTTTGCAAAAGGAATACCCAAGCAGAATGTTAACA 539
Query 676 TCGACTTTGGTGAACAAATTCTGAGTGTTGTGATTGAGGTTCCTGGAGAGGATGCGTATT 735
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 540 TCGACTTTGGTGAACAAATTCTGAGTGTTGTGATTGATGTTCCTGGAGAGGAGGCGTATT 599
Query 736 ATCTCCAACCGAGATTGTTTGGAAAGATAATACCAGATAAGTGCAAATATGAAGTATTGT 795
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 ATCTCCAACCGAGATTGTTTGGAAAGATTATACCAGATAAGTGCAAATATGAAGTATTGT 659
Query 796 CGACCAAAATTGAGATCTGTCTTGCAAAAGCCGATATAATCACATGGGCCTCCCTCGAAC 855
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CAACCAAAATTGAGATCCGTCTTGCAAAAGCCGATATAATCACATGGGCCTCCCTCGAAC 719
Query 856 ACGGCAAAGGGCCAGCGGTTTTGCCAAAGCCTAATGTCTCATCAGAGGTTTCACAGAGGC 915
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 720 ACGGCAAAGGGCCAGCAGTTTTGCCAAAGCCTAATGTCTCATCAGAGGTTTCGCAGAGGC 779
Query 916 CAGCTTATCCATCTTCTAAGAAAGTTAAGGACTGGGACAAGCTGGAAGCTGAAGTGAAGA 975
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 780 CAGCTTACCCATCATCTAAGAAAGTTAAGGACTGGGACAAGCTCGAAGCTGAAGTGAAGA 839
Query 976 AGCAGGAAAAAGATGAGAAGCTGGAAGGAGACGCAGCTTTGAACAAATTCTTCCGGGAGA 1035
| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 840 AACAGGAAAAGGATGAGAAGCTGGAAGGAGACGCAGCTATGAACAAATTCTTCCGTGAGA 899
Query 1036 TATACCAGAATGCGGATGAGGATATGAGGCGAGCGATGAGCAAATCATTTGTGGAATCGA 1095
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 900 TATACCAGAATGCGGATGAGGATACGAGGCGAGCGATGAGCAAATCATTTGTGGAATCGA 959
Query 1096 ATGGGACAGTGCTGTCAACAAACTGGCAAGAGGTTGGGACTAAGACAATCGAGAGTACTC 1155
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 960 ATGGGACAGTGCTGTCAACAAACTGGCAAGAGGTTGGGACTAAGAAAATCGAGAGCACTC 1019
Query 1156 CTCCGGATGGCATGGAGCTCAAGAAATGGGAGATCTGATCTGATATGATATGATGATCCT 1215
||||||||||||||||||||||||||||||||||||||||| | |||||||| || |
Sbjct 1020 CTCCGGATGGCATGGAGCTCAAGAAATGGGAGATCTGATCTC-T--GATATGAT-ATGAT 1075
Query 1216 TTCCTTTTTATGCAGTTGTGAATTTTGCCTAAATGTAGACAAATCTTGAAACCTGGTCCC 1275
| | ||| | | | || ||| |||||||| ||||||| |||| ||||||||||||
Sbjct 1076 TGCATTTGT--G--G--GT---TTT-GCCTAAATCTAGACAAGTCTTAAAACCTGGTCCC 1125
Query 1276 TTTCTTCCTGTAATGAGGATCCTAAGGtttttgcttttttGTTAAATATGGCTTTCTACC 1335
|||||||||||||||||| ||||||||||||| | |||||| |||||||||||||||||
Sbjct 1126 TTTCTTCCTGTAATGAGGGTCCTAAGGTTTTTTCCTTTTTGCTAAATATGGCTTTCTACT 1185
Query 1336 TCTGCTATGTTGTGACTTGTGAGTTATATTGTCTTTAGGTCTCAACttttttgtttttgt 1395
| ||||||||||||||||||||||||| ||||||||| |||||||||||| | | ||
Sbjct 1186 TATGCTATGTTGTGACTTGTGAGTTATG--GTCTTTAGGACTCAACTTTTTT-TGAT-GT 1241
Query 1396 ttttATTTGAGTATTCATAATTTC 1419
||| |||| | |||||||||||||
Sbjct 1242 TTT-ATTTAAATATTCATAATTTC 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5