BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G23590.1 Length=1546 Score E Sequences producing significant alignments: (Bits) Value Ahg492508 jgi|Araly1|492508|fgenesh2_kg.7__1941__AT4G23590.1 2054 0.0 Ahg945750 jgi|Araly1|945750|scaffold_701979.1 1020 0.0 > Ahg492508 jgi|Araly1|492508|fgenesh2_kg.7__1941__AT4G23590.1 Length=1475 Score = 2054 bits (1112), Expect = 0.0 Identities = 1382/1507 (92%), Gaps = 39/1507 (3%) Strand=Plus/Plus Query 47 TTCCAACGCTAGAGTTAAGAAATATGGCTAGCCAAGGATGCGTAGATTGGCAGTTCAGTG 106 ||||||||||||| |||||||||||| |||||| |||||||| |||||||||||||||| Sbjct 1 TTCCAACGCTAGACATAAGAAATATGGGTAGCCACGGATGCGTTGATTGGCAGTTCAGTG 60 Query 107 GCAGTGATGCAGCCGAAAAGGCCGCC-CAAGCCTCCCTAGGCACTTACTCTTCTGAAATC 165 | || ||||||||||||||||| ||| | |||||||||||| |||||||||||||||||| Sbjct 61 GAAGCGATGCAGCCGAAAAGGCTGCCGC-AGCCTCCCTAGGGACTTACTCTTCTGAAATC 119 Query 166 TTCAGTCTGTGTGACCCTCAAGGAAAGCCTATTTTGCCTCCACTAAGTGAAGAGGCAGAG 225 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 120 TTCGGTCTGTGTGACCCTCAAGGAAAGCCTATTTTGCCTCCACTAAGTGAGGAGGCAGAG 179 Query 226 ACCAGCCATACCGCCGAAAAGGCGGTTGTTAAGGCTGTCCTTTGCGGTACGGGAAACGCC 285 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 180 ACCAGCCATACCGCCGAAAAGGCGGTTGTTAAAGCTGTCCTTTGCGGTACAGGAAACGCC 239 Query 286 TATGCTCCAAGTATTGGCCTCCCGGTTGCCAAACGTGCTGTGGCGGAATATCTAAACCGA 345 || ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 240 TACGCTCCTAGTATTGGCCTCCCGGTTGCCAAACGTGCTGTGGCGGAATATTTAAACCGC 299 Query 346 GATCTTGACAATAAGCTAACGGGAGATGACGTATATATGACTGTTGGATGCAAACAAGCA 405 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 300 GATCTTGACAATAAGCTAACGGGAGATGATGTATATATGACTGTTGGATGCAAACAAGCG 359 Query 406 ATCGAGCTCGCGGTTAGTATTCTGGCTAAACCGAAAGCCAACATCTTGCTTCCGAGGCCA 465 ||||| || ||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 360 ATCGAACTTGCGGTCAGTATCCTGGCTAAACCCAAAGCCAACATCTTGCTTCCGAGGCCT 419 Query 466 GGCTTCCCATGGGACATGGTCCACTCTATCTACAAACACCTTGAGGTCCGAAGGTATGAG 525 ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 420 GGCTTCCCATGGGACATAGTCCACTCTATCTACAAAAACCTTGAGGTCCGAAGGTATGAA 479 Query 526 TTCATCCCTGAAAGAGACTTTGAGATCGATTTCAACAGCGTTAGAGAGATGGTAGACGAG 585 |||||||| ||||||||||||||||| |||||| ||||||| | |||||||| ||| ||| Sbjct 480 TTCATCCCCGAAAGAGACTTTGAGATTGATTTCGACAGCGTCACAGAGATGGCAGATGAG 539 Query 586 AACACTTTTGCGATATTTATAATCAACCCCCACAATCCCAATGGGAACTACTACACTGAG 645 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 540 AACACGTTTGCGATATTTATAATCAACCCTCACAATCCCAATGGGAACTACTACACTGAG 599 Query 646 GCTCATCTTAAGCAGCTCGCTACATTGGC-ACGGGAACTCGGGATAATGGTCGTTTCGGA 704 ||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| Sbjct 600 GCTCATCTTAAGCAGCTCGCTACATTGGCTA-GGGAACTCGGGATAATGGTGGTTTCGGA 658 Query 705 TGAAGTATATAGATGGTCCGTATTCGGGAGTAATCCATTTGTTCCAATGGGGAAATTCTC 764 |||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 659 TGAAGTATATCGATGGACCGTGTTCGGGAGTAATCCATTTGTTCCAATGGGGAAATTCTC 718 Query 765 CTCGATAGTACCAGTGATTACACTCGGGTCCATATCGAAAGGATGGATTGTCCCAGGATG 824 |||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 719 CTCGATAGTACCCGTGATTACACTCGGGTCCATCTCTAAAGGATGGATTGTCCCAGGATG 778 Query 825 GCGAACGGGCTGGCTCGCGTTACACGATCTAAATGGTGTCTTTAGATCCACAAAGGTCTT 884 |||||| ||||||||||| |||||||||||||||||||| ||||||| || |||||||| Sbjct 779 GCGAACAGGCTGGCTCGCACTACACGATCTAAATGGTGTCCTTAGATCTACCAAGGTCTT 838 Query 885 AAAAGCTGCGAAAGAATTTCTGGAGATTACTTCCAAACCACCAACTGTCATCCAGGCGGC 944 ||||||||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||| Sbjct 839 AAAAGCTGCTAAAGAATTTTTGGAGATTACTTCTAAACCACCAACTGTTATCCAGGCGGC 898 Query 945 TATTCCCACAATCTTGGAGAAAACTCCTCAAGATTTTTTCGAGA-AG-AGGGGGATTTTT 1002 ||||||||| ||||||||||||||||||||||| || ||| | | || ||| || |||| Sbjct 899 TATTCCCACCATCTTGGAGAAAACTCCTCAAGAGTTCTTC-A-ATAGCAGGCAGAGTTTT 956 Query 1003 CTAAAAGACAAAGTGGATTTTGGATATTCTAAGCTCAAGAACATACCAACTCTCACCTGC 1062 || ||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 957 CTGAAAGATAAAGTGGATTTTGGATATTCTAAGCTCAAGCACATACCAACCCTCACCTGC 1016 Query 1063 TACATGAAACCTGAATCATGCACCTTCTTATGGACCAAGCTGGACCCATTGCATTTTGTA 1122 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 TACATGAAACCTGAAGCATGCACCTTCTTATGGACCAAGCTGGACCCATTGCATTTTGTA 1076 Query 1123 GACATTGAAGACGATCACGACTTCTGCAGGAAGCTTGCTAAGGAAGAAAATCTCGTTGTT 1182 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 1077 GACATTGAAGACGATCACGATTTCTGCAGGAAGCTTGCTAAGGAAGAAAACCTCGTTGTT 1136 Query 1183 TTACCAGGAATTGCATTTGGTCAGAATAACTGGTTGAGGCATTCTATCGACATGGAGACT 1242 ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 1137 TTACCGGGGATTGCATTTGGCCAGAAGAACTGGTTGAGGCATTCTATCGACATGGAGACT 1196 Query 1243 CCAAGATTGGAGGATGCATTTGAAAGATTAAAGAGCTTCTGTGAACGCCATTCCGTTATA 1302 || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1197 CCTAGATTGGAGGATGCATTTGATAGATTGAAGAGCTTCTGTGAACGCCATTCCGTTATA 1256 Query 1303 GTTGAAGCTTCTTCACTCAAAGACGTCAATGGCGTCAACTAAAGGGTCAATATAAATTTC 1362 ||||||||||| ||| |||| ||||||||||||||||||||||||| || | | | Sbjct 1257 GTTGAAGCTTC---ACTAAAAGGCGTCAATGGCGTCAACTAAAGGGTC--TA-AG-T--C 1307 Query 1363 TTTGCCTTAAGTCTTTTACATATGCTATAATAATAAATGTGTGT--TTTATTGATATGAG 1420 || | | | | | ||||||||||||||||||||| || ||||||||| |||| Sbjct 1308 TT--C-T-A---C----A--TATGCTATAATAATAAATGTGGGTGGTTTATTGATTTGAG 1354 Query 1421 ATCAATCATGAACACTTTTGTATCTGTAACAAATAAAATTGGTGAATTTATCACCATGTC 1480 ||||||||||||||| || |||||||||||||||||| |||||| | |||| |||||||| Sbjct 1355 ATCAATCATGAACACCTTCGTATCTGTAACAAATAAATTTGGTGTACTTATGACCATGTC 1414 Query 1481 GT-GTAATGTTTTCTCATAGTTTGCAATATTTCGATCGATGTATTTCTACTTTTCGAAAC 1539 || ||||||||||||||||||||||||| || |||| | | ||||||||||| |||||| Sbjct 1415 GTCGTAATGTTTTCTCATAGTTTGCAAT-TT-CGAT-G-T--ATTTCTACTTTCCGAAAC 1468 Query 1540 ATAAGAT 1546 ||||||| Sbjct 1469 ATAAGAT 1475 > Ahg945750 jgi|Araly1|945750|scaffold_701979.1 Length=1309 Score = 1020 bits (552), Expect = 0.0 Identities = 994/1203 (83%), Gaps = 48/1203 (4%) Strand=Plus/Plus Query 173 TGTGTGACCCTCAA-GG-AAAGCCTATTTTGCCTCCACTAAGTGAAGAGGC-AGAGACCA 229 |||| || ||| || || ||| || |||||||| |||| || || ||| | ||||||| Sbjct 124 TGTGCGATCCT-AATGGCAAA-CCCATTTTGCCCCCACGAAATG-AGATCCTGGAGACCA 180 Query 230 GCCATACCGCCGAAAAGGCGGTTGTTAAGGCTGTCCTTTGCGGTACGGGAAACGCCTATG 289 || |||| |||||||| || |||||||| || || |||| || |||||||||||||||| Sbjct 181 GCAATACAGCCGAAAAAGCAGTTGTTAAAGCCGTTCTTTATGGCACGGGAAACGCCTATG 240 Query 290 CTCCAAGTATTGGCCTCCCGGTTGCCAAACGTGCTGTGGCGGAATATCTAAACCGAGATC 349 |||| || |||||||| ||| |||||||||||||| || || |||||||||| || || Sbjct 241 CTCCTAGCGTTGGCCTCGCGGCCGCCAAACGTGCTGTAGCAGAGTATCTAAACCAAGGTC 300 Query 350 TTGAC-AATAAGCTAACGGGAGATGACGTATATATGACTGTTGGATGCAAACAAGCAATC 408 || | || ||||| || | ||||||||| | ||||||| |||||||||||||||| || Sbjct 301 TT-CCAAAGAAGCTTACAGCAGATGACGTGTTTATGACTCTTGGATGCAAACAAGCCATT 359 Query 409 GAGCTCGCGGTTAG-TATTCTGGCTAAACCGAAAGCCAACATCTTGCTTCCGAGGCCAGG 467 |||||||| | ||| |||||||||||||||||||||||| | ||||||||||| || || Sbjct 360 GAGCTCGCAG-TAGACATTCTGGCTAAACCGAAAGCCAACGTTTTGCTTCCGAGTCCTGG 418 Query 468 CTTCCCATGGGACATGGTCCACTCTATCTACA-AACACCTTGAGGTCCG-AAGGTATGAG 525 ||||||||||||| | |||| ||| ||||||| | ||||||||||||| | ||||| Sbjct 419 CTTCCCATGGGACGTAGTCCGCTCCATCTACAGGA-ACCTTGAGGTCCGCCA-CTATGAT 476 Query 526 TT-CATCCCTGAAAGAGACTTTGAGATCGA-TTTCAACAGCGTTAGAGAGATGGTAGACG 583 || | |||| ||||| ||||||||||||| ||| | ||||| ||| | | || |||| Sbjct 477 TTCCTTCCCCAAAAGA-ACTTTGAGATCGACTTT-GATAGCGTCCGAGCGCTCGTGGACG 534 Query 584 AGAACACTTTTGCGATATTTATAATCAACCCCCACAATCCCAATGGGAACTAC-TACACT 642 ||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| | Sbjct 535 AGAACACGTTTGCGATATTTATAATCAACCCCCACAATCCCAATGGGAAC-ACCTACTCC 593 Query 643 GAGGCTCATCTTAAGCAGCTCGCT-ACATTGGC-ACGGGAACTCGGGATAATGGTCGTTT 700 ||||||||||| || ||||||||| | |||||| | || ||||| ||| ||||| |||| Sbjct 594 GAGGCTCATCTCAAACAGCTCGCTGA-ATTGGCTAAGG-AACTCAAGATCATGGTGGTTT 651 Query 701 CGGATGAAGTATATAGATGGTC-CGTATTCGGGAGTAATCCATTTGTTCCAATGGGGAAA 759 | || || || | ||||||| | | | || |||||||| || |||||||| ||||| ||| Sbjct 652 CTGACGAGGTTTTTAGATGGACAC-TCTTTGGGAGTAACCCTTTTGTTCCGATGGGAAAA 710 Query 760 TTCTCCTCGATAGTACCAGTGATTACACTCGGGTCCATATCGAAAGG-ATGGATTGTCCC 818 ||||| ||||| ||||||||| ||||||| || |||||||| ||||| ||||| || || Sbjct 711 TTCTCATCGATCGTACCAGTGGTTACACTTGGATCCATATC-AAAGGGATGGAAAGTTCC 769 Query 819 AGGATGGCGAACGGGCTGGCTCGCGTTACACGATCTAAATGGTGTCTTTAGATCCACAAA 878 |||||||||||| |||||||||||| | || |||||| |||||||||| ||| ||| || Sbjct 770 AGGATGGCGAACTGGCTGGCTCGCGCTGCATGATCTAGATGGTGTCTTCAGAAACACCAA 829 Query 879 GGTCTTAAAAGCTGCGA-AAGAATTTCTGGAGATTACTTCCA-AA-CCACCAACTGTCAT 935 ||||||| ||||||| | |||||| ||| |||| | | | || || || ||||| || Sbjct 830 GGTCTTACAAGCTGC-ACAAGAATATCTCCAGATAAA--CAATAATCCTCCGACTGTTAT 886 Query 936 CCAGGCGGCTATTCCC-ACAATCTTGGAGAAAACTCCTCAAGATTTTTTCGAGAAGAGGG 994 ||||||||||||||| ||| ||||||||||||||||| |||| || ||||| |||||| Sbjct 887 CCAGGCGGCTATTCCTGACA-TCTTGGAGAAAACTCCTAAAGACTTCTTCGATAAGAGGC 945 Query 995 GGATTTTTCTAAAAGACAAAGTGGATTTTGGATATTCTAAGCTCAAGAACATACCAA-CT 1053 | |||||| ||||||||||| || ||||| ||||||||||||||| ||||||| | | Sbjct 946 AAAGTTTTCTGAAAGACAAAGTAGAATTTGGTTATTCTAAGCTCAAGCACATACCTAGC- 1004 Query 1054 CTCACCTGCTACATGAAACCTGAATCATGCACCTTCTTATGGACCAAGCTGGACCCATTG 1113 ||||| |||||||||||||||||| | |||||||||||||||||| |||| || || | Sbjct 1005 CTCACTTGCTACATGAAACCTGAAGCGTGCACCTTCTTATGGACCGAGCTTGATTTATCG 1064 Query 1114 CAT-TTTGTAGACATTGAAGACGATCACGACTTCTGCAGGAAGCTTGCTA-AGGAAGAAA 1171 | ||||| ||||| ||||| ||||| ||||| |||| |||||||||| || |||||| Sbjct 1065 -AGCTTTGTGGACATCGAAGATGATCAAGACTTTTGCAATAAGCTTGCTATAG-AAGAAA 1122 Query 1172 ATCTCGTTGTTTTACCAGGAATTGCATTTGGTCAGAATAACTGGTTGAGGCATTCTATCG 1231 | ||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| Sbjct 1123 ACCTCGTCGTTTTACCAGGGATTGCATTTAGTCAGAAGAACTGGTTGAGGCATTCTATCG 1182 Query 1232 ACATGGAGACTCCAAGATTGGAGGATGCATTTGAAAGATTAAAGAGCTTCTGTGAACGCC 1291 | ||||||||||| | ||||||||||||| | |||||||| |||||||||||||| |||| Sbjct 1183 ATATGGAGACTCCGATATTGGAGGATGCAATGGAAAGATTGAAGAGCTTCTGTGATCGCC 1242 Query 1292 ATTCCGTTATAGTTGAAGCTTCTTCACTCAAAGACGTCAATGGCGTCAACTAAAGGGTCA 1351 ||||| ||| || ||||| | ||||||||||||||||||| |||||||||||||||| Sbjct 1243 ATTCCATTAAAG---AAGCT-C--CACTCAAAGACGTCAATGGTGTCAACTAAAGGGTCA 1296 Query 1352 ATA 1354 ||| Sbjct 1297 ATA 1299 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57897172400 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5