BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23590.1
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492508 jgi|Araly1|492508|fgenesh2_kg.7__1941__AT4G23590.1 2054 0.0
Ahg945750 jgi|Araly1|945750|scaffold_701979.1 1020 0.0
> Ahg492508 jgi|Araly1|492508|fgenesh2_kg.7__1941__AT4G23590.1
Length=1475
Score = 2054 bits (1112), Expect = 0.0
Identities = 1382/1507 (92%), Gaps = 39/1507 (3%)
Strand=Plus/Plus
Query 47 TTCCAACGCTAGAGTTAAGAAATATGGCTAGCCAAGGATGCGTAGATTGGCAGTTCAGTG 106
||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||||
Sbjct 1 TTCCAACGCTAGACATAAGAAATATGGGTAGCCACGGATGCGTTGATTGGCAGTTCAGTG 60
Query 107 GCAGTGATGCAGCCGAAAAGGCCGCC-CAAGCCTCCCTAGGCACTTACTCTTCTGAAATC 165
| || ||||||||||||||||| ||| | |||||||||||| ||||||||||||||||||
Sbjct 61 GAAGCGATGCAGCCGAAAAGGCTGCCGC-AGCCTCCCTAGGGACTTACTCTTCTGAAATC 119
Query 166 TTCAGTCTGTGTGACCCTCAAGGAAAGCCTATTTTGCCTCCACTAAGTGAAGAGGCAGAG 225
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 TTCGGTCTGTGTGACCCTCAAGGAAAGCCTATTTTGCCTCCACTAAGTGAGGAGGCAGAG 179
Query 226 ACCAGCCATACCGCCGAAAAGGCGGTTGTTAAGGCTGTCCTTTGCGGTACGGGAAACGCC 285
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 180 ACCAGCCATACCGCCGAAAAGGCGGTTGTTAAAGCTGTCCTTTGCGGTACAGGAAACGCC 239
Query 286 TATGCTCCAAGTATTGGCCTCCCGGTTGCCAAACGTGCTGTGGCGGAATATCTAAACCGA 345
|| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 TACGCTCCTAGTATTGGCCTCCCGGTTGCCAAACGTGCTGTGGCGGAATATTTAAACCGC 299
Query 346 GATCTTGACAATAAGCTAACGGGAGATGACGTATATATGACTGTTGGATGCAAACAAGCA 405
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 GATCTTGACAATAAGCTAACGGGAGATGATGTATATATGACTGTTGGATGCAAACAAGCG 359
Query 406 ATCGAGCTCGCGGTTAGTATTCTGGCTAAACCGAAAGCCAACATCTTGCTTCCGAGGCCA 465
||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 360 ATCGAACTTGCGGTCAGTATCCTGGCTAAACCCAAAGCCAACATCTTGCTTCCGAGGCCT 419
Query 466 GGCTTCCCATGGGACATGGTCCACTCTATCTACAAACACCTTGAGGTCCGAAGGTATGAG 525
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 420 GGCTTCCCATGGGACATAGTCCACTCTATCTACAAAAACCTTGAGGTCCGAAGGTATGAA 479
Query 526 TTCATCCCTGAAAGAGACTTTGAGATCGATTTCAACAGCGTTAGAGAGATGGTAGACGAG 585
|||||||| ||||||||||||||||| |||||| ||||||| | |||||||| ||| |||
Sbjct 480 TTCATCCCCGAAAGAGACTTTGAGATTGATTTCGACAGCGTCACAGAGATGGCAGATGAG 539
Query 586 AACACTTTTGCGATATTTATAATCAACCCCCACAATCCCAATGGGAACTACTACACTGAG 645
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 AACACGTTTGCGATATTTATAATCAACCCTCACAATCCCAATGGGAACTACTACACTGAG 599
Query 646 GCTCATCTTAAGCAGCTCGCTACATTGGC-ACGGGAACTCGGGATAATGGTCGTTTCGGA 704
||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||
Sbjct 600 GCTCATCTTAAGCAGCTCGCTACATTGGCTA-GGGAACTCGGGATAATGGTGGTTTCGGA 658
Query 705 TGAAGTATATAGATGGTCCGTATTCGGGAGTAATCCATTTGTTCCAATGGGGAAATTCTC 764
|||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGAAGTATATCGATGGACCGTGTTCGGGAGTAATCCATTTGTTCCAATGGGGAAATTCTC 718
Query 765 CTCGATAGTACCAGTGATTACACTCGGGTCCATATCGAAAGGATGGATTGTCCCAGGATG 824
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 719 CTCGATAGTACCCGTGATTACACTCGGGTCCATCTCTAAAGGATGGATTGTCCCAGGATG 778
Query 825 GCGAACGGGCTGGCTCGCGTTACACGATCTAAATGGTGTCTTTAGATCCACAAAGGTCTT 884
|||||| ||||||||||| |||||||||||||||||||| ||||||| || ||||||||
Sbjct 779 GCGAACAGGCTGGCTCGCACTACACGATCTAAATGGTGTCCTTAGATCTACCAAGGTCTT 838
Query 885 AAAAGCTGCGAAAGAATTTCTGGAGATTACTTCCAAACCACCAACTGTCATCCAGGCGGC 944
||||||||| ||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct 839 AAAAGCTGCTAAAGAATTTTTGGAGATTACTTCTAAACCACCAACTGTTATCCAGGCGGC 898
Query 945 TATTCCCACAATCTTGGAGAAAACTCCTCAAGATTTTTTCGAGA-AG-AGGGGGATTTTT 1002
||||||||| ||||||||||||||||||||||| || ||| | | || ||| || ||||
Sbjct 899 TATTCCCACCATCTTGGAGAAAACTCCTCAAGAGTTCTTC-A-ATAGCAGGCAGAGTTTT 956
Query 1003 CTAAAAGACAAAGTGGATTTTGGATATTCTAAGCTCAAGAACATACCAACTCTCACCTGC 1062
|| ||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 957 CTGAAAGATAAAGTGGATTTTGGATATTCTAAGCTCAAGCACATACCAACCCTCACCTGC 1016
Query 1063 TACATGAAACCTGAATCATGCACCTTCTTATGGACCAAGCTGGACCCATTGCATTTTGTA 1122
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TACATGAAACCTGAAGCATGCACCTTCTTATGGACCAAGCTGGACCCATTGCATTTTGTA 1076
Query 1123 GACATTGAAGACGATCACGACTTCTGCAGGAAGCTTGCTAAGGAAGAAAATCTCGTTGTT 1182
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1077 GACATTGAAGACGATCACGATTTCTGCAGGAAGCTTGCTAAGGAAGAAAACCTCGTTGTT 1136
Query 1183 TTACCAGGAATTGCATTTGGTCAGAATAACTGGTTGAGGCATTCTATCGACATGGAGACT 1242
||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1137 TTACCGGGGATTGCATTTGGCCAGAAGAACTGGTTGAGGCATTCTATCGACATGGAGACT 1196
Query 1243 CCAAGATTGGAGGATGCATTTGAAAGATTAAAGAGCTTCTGTGAACGCCATTCCGTTATA 1302
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1197 CCTAGATTGGAGGATGCATTTGATAGATTGAAGAGCTTCTGTGAACGCCATTCCGTTATA 1256
Query 1303 GTTGAAGCTTCTTCACTCAAAGACGTCAATGGCGTCAACTAAAGGGTCAATATAAATTTC 1362
||||||||||| ||| |||| ||||||||||||||||||||||||| || | | |
Sbjct 1257 GTTGAAGCTTC---ACTAAAAGGCGTCAATGGCGTCAACTAAAGGGTC--TA-AG-T--C 1307
Query 1363 TTTGCCTTAAGTCTTTTACATATGCTATAATAATAAATGTGTGT--TTTATTGATATGAG 1420
|| | | | | | ||||||||||||||||||||| || ||||||||| ||||
Sbjct 1308 TT--C-T-A---C----A--TATGCTATAATAATAAATGTGGGTGGTTTATTGATTTGAG 1354
Query 1421 ATCAATCATGAACACTTTTGTATCTGTAACAAATAAAATTGGTGAATTTATCACCATGTC 1480
||||||||||||||| || |||||||||||||||||| |||||| | |||| ||||||||
Sbjct 1355 ATCAATCATGAACACCTTCGTATCTGTAACAAATAAATTTGGTGTACTTATGACCATGTC 1414
Query 1481 GT-GTAATGTTTTCTCATAGTTTGCAATATTTCGATCGATGTATTTCTACTTTTCGAAAC 1539
|| ||||||||||||||||||||||||| || |||| | | ||||||||||| ||||||
Sbjct 1415 GTCGTAATGTTTTCTCATAGTTTGCAAT-TT-CGAT-G-T--ATTTCTACTTTCCGAAAC 1468
Query 1540 ATAAGAT 1546
|||||||
Sbjct 1469 ATAAGAT 1475
> Ahg945750 jgi|Araly1|945750|scaffold_701979.1
Length=1309
Score = 1020 bits (552), Expect = 0.0
Identities = 994/1203 (83%), Gaps = 48/1203 (4%)
Strand=Plus/Plus
Query 173 TGTGTGACCCTCAA-GG-AAAGCCTATTTTGCCTCCACTAAGTGAAGAGGC-AGAGACCA 229
|||| || ||| || || ||| || |||||||| |||| || || ||| | |||||||
Sbjct 124 TGTGCGATCCT-AATGGCAAA-CCCATTTTGCCCCCACGAAATG-AGATCCTGGAGACCA 180
Query 230 GCCATACCGCCGAAAAGGCGGTTGTTAAGGCTGTCCTTTGCGGTACGGGAAACGCCTATG 289
|| |||| |||||||| || |||||||| || || |||| || ||||||||||||||||
Sbjct 181 GCAATACAGCCGAAAAAGCAGTTGTTAAAGCCGTTCTTTATGGCACGGGAAACGCCTATG 240
Query 290 CTCCAAGTATTGGCCTCCCGGTTGCCAAACGTGCTGTGGCGGAATATCTAAACCGAGATC 349
|||| || |||||||| ||| |||||||||||||| || || |||||||||| || ||
Sbjct 241 CTCCTAGCGTTGGCCTCGCGGCCGCCAAACGTGCTGTAGCAGAGTATCTAAACCAAGGTC 300
Query 350 TTGAC-AATAAGCTAACGGGAGATGACGTATATATGACTGTTGGATGCAAACAAGCAATC 408
|| | || ||||| || | ||||||||| | ||||||| |||||||||||||||| ||
Sbjct 301 TT-CCAAAGAAGCTTACAGCAGATGACGTGTTTATGACTCTTGGATGCAAACAAGCCATT 359
Query 409 GAGCTCGCGGTTAG-TATTCTGGCTAAACCGAAAGCCAACATCTTGCTTCCGAGGCCAGG 467
|||||||| | ||| |||||||||||||||||||||||| | ||||||||||| || ||
Sbjct 360 GAGCTCGCAG-TAGACATTCTGGCTAAACCGAAAGCCAACGTTTTGCTTCCGAGTCCTGG 418
Query 468 CTTCCCATGGGACATGGTCCACTCTATCTACA-AACACCTTGAGGTCCG-AAGGTATGAG 525
||||||||||||| | |||| ||| ||||||| | ||||||||||||| | |||||
Sbjct 419 CTTCCCATGGGACGTAGTCCGCTCCATCTACAGGA-ACCTTGAGGTCCGCCA-CTATGAT 476
Query 526 TT-CATCCCTGAAAGAGACTTTGAGATCGA-TTTCAACAGCGTTAGAGAGATGGTAGACG 583
|| | |||| ||||| ||||||||||||| ||| | ||||| ||| | | || ||||
Sbjct 477 TTCCTTCCCCAAAAGA-ACTTTGAGATCGACTTT-GATAGCGTCCGAGCGCTCGTGGACG 534
Query 584 AGAACACTTTTGCGATATTTATAATCAACCCCCACAATCCCAATGGGAACTAC-TACACT 642
||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 535 AGAACACGTTTGCGATATTTATAATCAACCCCCACAATCCCAATGGGAAC-ACCTACTCC 593
Query 643 GAGGCTCATCTTAAGCAGCTCGCT-ACATTGGC-ACGGGAACTCGGGATAATGGTCGTTT 700
||||||||||| || ||||||||| | |||||| | || ||||| ||| ||||| ||||
Sbjct 594 GAGGCTCATCTCAAACAGCTCGCTGA-ATTGGCTAAGG-AACTCAAGATCATGGTGGTTT 651
Query 701 CGGATGAAGTATATAGATGGTC-CGTATTCGGGAGTAATCCATTTGTTCCAATGGGGAAA 759
| || || || | ||||||| | | | || |||||||| || |||||||| ||||| |||
Sbjct 652 CTGACGAGGTTTTTAGATGGACAC-TCTTTGGGAGTAACCCTTTTGTTCCGATGGGAAAA 710
Query 760 TTCTCCTCGATAGTACCAGTGATTACACTCGGGTCCATATCGAAAGG-ATGGATTGTCCC 818
||||| ||||| ||||||||| ||||||| || |||||||| ||||| ||||| || ||
Sbjct 711 TTCTCATCGATCGTACCAGTGGTTACACTTGGATCCATATC-AAAGGGATGGAAAGTTCC 769
Query 819 AGGATGGCGAACGGGCTGGCTCGCGTTACACGATCTAAATGGTGTCTTTAGATCCACAAA 878
|||||||||||| |||||||||||| | || |||||| |||||||||| ||| ||| ||
Sbjct 770 AGGATGGCGAACTGGCTGGCTCGCGCTGCATGATCTAGATGGTGTCTTCAGAAACACCAA 829
Query 879 GGTCTTAAAAGCTGCGA-AAGAATTTCTGGAGATTACTTCCA-AA-CCACCAACTGTCAT 935
||||||| ||||||| | |||||| ||| |||| | | | || || || ||||| ||
Sbjct 830 GGTCTTACAAGCTGC-ACAAGAATATCTCCAGATAAA--CAATAATCCTCCGACTGTTAT 886
Query 936 CCAGGCGGCTATTCCC-ACAATCTTGGAGAAAACTCCTCAAGATTTTTTCGAGAAGAGGG 994
||||||||||||||| ||| ||||||||||||||||| |||| || ||||| ||||||
Sbjct 887 CCAGGCGGCTATTCCTGACA-TCTTGGAGAAAACTCCTAAAGACTTCTTCGATAAGAGGC 945
Query 995 GGATTTTTCTAAAAGACAAAGTGGATTTTGGATATTCTAAGCTCAAGAACATACCAA-CT 1053
| |||||| ||||||||||| || ||||| ||||||||||||||| ||||||| | |
Sbjct 946 AAAGTTTTCTGAAAGACAAAGTAGAATTTGGTTATTCTAAGCTCAAGCACATACCTAGC- 1004
Query 1054 CTCACCTGCTACATGAAACCTGAATCATGCACCTTCTTATGGACCAAGCTGGACCCATTG 1113
||||| |||||||||||||||||| | |||||||||||||||||| |||| || || |
Sbjct 1005 CTCACTTGCTACATGAAACCTGAAGCGTGCACCTTCTTATGGACCGAGCTTGATTTATCG 1064
Query 1114 CAT-TTTGTAGACATTGAAGACGATCACGACTTCTGCAGGAAGCTTGCTA-AGGAAGAAA 1171
| ||||| ||||| ||||| ||||| ||||| |||| |||||||||| || ||||||
Sbjct 1065 -AGCTTTGTGGACATCGAAGATGATCAAGACTTTTGCAATAAGCTTGCTATAG-AAGAAA 1122
Query 1172 ATCTCGTTGTTTTACCAGGAATTGCATTTGGTCAGAATAACTGGTTGAGGCATTCTATCG 1231
| ||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1123 ACCTCGTCGTTTTACCAGGGATTGCATTTAGTCAGAAGAACTGGTTGAGGCATTCTATCG 1182
Query 1232 ACATGGAGACTCCAAGATTGGAGGATGCATTTGAAAGATTAAAGAGCTTCTGTGAACGCC 1291
| ||||||||||| | ||||||||||||| | |||||||| |||||||||||||| ||||
Sbjct 1183 ATATGGAGACTCCGATATTGGAGGATGCAATGGAAAGATTGAAGAGCTTCTGTGATCGCC 1242
Query 1292 ATTCCGTTATAGTTGAAGCTTCTTCACTCAAAGACGTCAATGGCGTCAACTAAAGGGTCA 1351
||||| ||| || ||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 1243 ATTCCATTAAAG---AAGCT-C--CACTCAAAGACGTCAATGGTGTCAACTAAAGGGTCA 1296
Query 1352 ATA 1354
|||
Sbjct 1297 ATA 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57897172400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5