BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23600.1
Length=1634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945750 jgi|Araly1|945750|scaffold_701979.1 1978 0.0
Ahg492508 jgi|Araly1|492508|fgenesh2_kg.7__1941__AT4G23590.1 976 0.0
> Ahg945750 jgi|Araly1|945750|scaffold_701979.1
Length=1309
Score = 1978 bits (1071), Expect = 0.0
Identities = 1232/1311 (94%), Gaps = 5/1311 (0%)
Strand=Plus/Plus
Query 20 TAGAGAA-AAATAAGT-AGATATGGCAACCCTTAAGTGCATTGATTGGCAATTCAGCGGA 77
|||| || ||| |||| ||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1 TAGA-AAGAAAGAAGTAAGAAATGGCAACCCTTAAGTGCATTGACTGGCAATTCAGCGGA 59
Query 78 AGCGAGGCGGCCAAAGATGCTGCTGCGGCCTCCTTAGGCTCATATACCTCTGCACTCTAT 137
||||||||||||||||| ||||| | |||| ||||||| ||||||||||||||||||||
Sbjct 60 AGCGAGGCGGCCAAAGAAGCTGCCGGGGCCAGCTTAGGCACATATACCTCTGCACTCTAT 119
Query 138 GCCCTGTGCGATCCTCATGGCAAACCCATTTTGCCCCCACGAAATGAGATCCTGGAGACC 197
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCTATGTGCGATCCTAATGGCAAACCCATTTTGCCCCCACGAAATGAGATCCTGGAGACC 179
Query 198 AGCAATACAGCCGAAAAAGCAGTTGTTAAAGCTGTTCTTTATGGCTCGGGAAACGCCTAT 257
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 180 AGCAATACAGCCGAAAAAGCAGTTGTTAAAGCCGTTCTTTATGGCACGGGAAACGCCTAT 239
Query 258 GCTCCTAGC-TTAGGCCTCGCGGCCGCCAAAAGTGCCGTAGCAGAGTATCTAAACCAAGG 316
||||||||| || |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 240 GCTCCTAGCGTT-GGCCTCGCGGCCGCCAAACGTGCTGTAGCAGAGTATCTAAACCAAGG 298
Query 317 TCTTCCAAAGAAGCTTACCGCAGATGACGTGTTTATGACTCTGGGATGCAAACAAGCTAT 376
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 299 TCTTCCAAAGAAGCTTACAGCAGATGACGTGTTTATGACTCTTGGATGCAAACAAGCCAT 358
Query 377 TGAGCTCGCGGTAGACATTCTCGCTAAACCGAAAGCCAACGTTTTGCTTCCGAGTCCCGG 436
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 359 TGAGCTCGCAGTAGACATTCTGGCTAAACCGAAAGCCAACGTTTTGCTTCCGAGTCCTGG 418
Query 437 CTTCCCATGGGACCTAGTCCGCTCCATCTACAAGAACCTTGAGGTCCGCCACTATAATTT 496
||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 419 CTTCCCATGGGACGTAGTCCGCTCCATCTACAGGAACCTTGAGGTCCGCCACTATGATTT 478
Query 497 CCTTCCAGAAAAGAACTTTGAAATCGACTTTGATAGCGTCCGAGCGCTCGTGGACGAGAA 556
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 479 CCTTCCCCAAAAGAACTTTGAGATCGACTTTGATAGCGTCCGAGCGCTCGTGGACGAGAA 538
Query 557 CACATTTGCCATATTTATAATCAACCCCCACAACCCCAATGGTAACACCTACTCCGAGGC 616
||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 539 CACGTTTGCGATATTTATAATCAACCCCCACAATCCCAATGGGAACACCTACTCCGAGGC 598
Query 617 TCATCTCAAACAGCTGGCTGAACTGGCTAAGGAACTCAAGATTATGGTGGTTTCTGACGA 676
||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 599 TCATCTCAAACAGCTCGCTGAATTGGCTAAGGAACTCAAGATCATGGTGGTTTCTGACGA 658
Query 677 GGTTTTTAGATGGACACTCTTTGGTAGTAACCCTTTTGTTCCTATGGGAAAATTCTCGTC 736
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 659 GGTTTTTAGATGGACACTCTTTGGGAGTAACCCTTTTGTTCCGATGGGAAAATTCTCATC 718
Query 737 GATCGTACCAGTGGTTACACTCGGATCCATATCAAAGGGATGGAAAGTCCCAGGATGGCG 796
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 719 GATCGTACCAGTGGTTACACTTGGATCCATATCAAAGGGATGGAAAGTTCCAGGATGGCG 778
Query 797 AACTGGTTGGCTCACGCTACATGATCTAGACGGTGTCTTCAGAAACACCAAGGTCTTACA 856
|||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 779 AACTGGCTGGCTCGCGCTGCATGATCTAGATGGTGTCTTCAGAAACACCAAGGTCTTACA 838
Query 857 AGCTGCTCAAGATTTTCTCCAGATAAACAATAACCCTCCGACAGTTATCCAGGCGGCTAT 916
|||||| ||||| | |||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 839 AGCTGCACAAGAATATCTCCAGATAAACAATAATCCTCCGACTGTTATCCAGGCGGCTAT 898
Query 917 TCCTGACATCTTGGAGAAAACTCCTCAAGAGTTTTTTGATAAGAGGCAGAGTTTTCTGAA 976
||||||||||||||||||||||||| |||| || || ||||||||||| |||||||||||
Sbjct 899 TCCTGACATCTTGGAGAAAACTCCTAAAGACTTCTTCGATAAGAGGCAAAGTTTTCTGAA 958
Query 977 AGATAAAGTAGAATTTGGTTATTCTAAGCTCAAGTACATTCCTAGCCTCACTTGCTACAT 1036
||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 959 AGACAAAGTAGAATTTGGTTATTCTAAGCTCAAGCACATACCTAGCCTCACTTGCTACAT 1018
Query 1037 GAAACCCGAAGCCTGCACCTTCTTATGGACCGAGCTTGATTTATCGAGCTTTGTGGACAT 1096
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GAAACCTGAAGCGTGCACCTTCTTATGGACCGAGCTTGATTTATCGAGCTTTGTGGACAT 1078
Query 1097 CGAAGACGATCAAGACTTTTGCAATAAGCTTGCTAAAGAAGAAAACCTCGTCGTTTTACC 1156
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1079 CGAAGATGATCAAGACTTTTGCAATAAGCTTGCTATAGAAGAAAACCTCGTCGTTTTACC 1138
Query 1157 AGGGATTGCATTCAGTCAGAAGAACTGGTTGAGGCATTCTATCGATATGGAGACTCCGGT 1216
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1139 AGGGATTGCATTTAGTCAGAAGAACTGGTTGAGGCATTCTATCGATATGGAGACTCCGAT 1198
Query 1217 ATTGGAGGATGCATTGGAAAGATTGAAGAGCTTCTGCGATCGCCATTCCAACAAAAAAGC 1276
||||||||||||| |||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct 1199 ATTGGAGGATGCAATGGAAAGATTGAAGAGCTTCTGTGATCGCCATTCCATTAAAGAAGC 1258
Query 1277 TCCCCTCAAAGACGTCAATGGTGTTAAGTAAAGGGTCAATATGGTTATTTG 1327
||| |||||||||||||||||||| || ||||||||||||| || | ||||
Sbjct 1259 TCCACTCAAAGACGTCAATGGTGTCAACTAAAGGGTCAATACGGATCTTTG 1309
> Ahg492508 jgi|Araly1|492508|fgenesh2_kg.7__1941__AT4G23590.1
Length=1475
Score = 976 bits (528), Expect = 0.0
Identities = 1172/1472 (80%), Gaps = 88/1472 (6%)
Strand=Plus/Plus
Query 54 TGCATTGATTGGCAATTCAGCGGAAGCGAGGCGGCC-AAAGATGCTGCTGCGGCCTCCTT 112
||| |||||||||| ||||| |||||||| || ||| ||| | ||||| || |||||| |
Sbjct 39 TGCGTTGATTGGCAGTTCAGTGGAAGCGATGCAGCCGAAA-AGGCTGCCGCAGCCTCCCT 97
Query 113 AGGCTCATATAC-C-TCTGCACTCTAT-GCCCTGTGCGATCCTCATGGCAAA-CCCATTT 168
||| | | ||| | |||| | ||| | | ||||| || ||||| || ||| || ||||
Sbjct 98 AGGGAC-T-TACTCTTCTGAAATCT-TCGGTCTGTGTGACCCTCAAGG-AAAGCCTATTT 153
Query 169 TGCCCCCACGAAATGA-GATCCTGGAGACCAGCAATACAGCCGAAAAAGCAGTTGTTAAA 227
|||| |||| || ||| || | ||||||||| |||| |||||||| || |||||||||
Sbjct 154 TGCCTCCACTAAGTGAGGAGGC-AGAGACCAGCCATACCGCCGAAAAGGCGGTTGTTAAA 212
Query 228 GCTGTTCTTTATGGCT-CGGGAAACGCCTATGCTCCTAGCT-TAGGCCTCGCGGCCGCCA 285
||||| |||| || | | ||||||||||| |||||||| | | |||||| ||| ||||
Sbjct 213 GCTGTCCTTTGCGG-TACAGGAAACGCCTACGCTCCTAG-TATTGGCCTCCCGGTTGCCA 270
Query 286 AAAGTGCCGTAGCAGAGTATCTAAACCAAGGTCTTCCA-AAGAAGCTTACCGCAGATGAC 344
|| |||| || || || ||| |||||| | |||| | || ||||| || | ||||||
Sbjct 271 AACGTGCTGTGGCGGAATATTTAAACCGCGATCTT-GACAATAAGCTAACGGGAGATGAT 329
Query 345 GTGTTTATGACTCTGGGATGCAAACAAGCTATTGAGCTCGCGGT-AGACATTCTCGCTAA 403
|| | ||||||| | |||||||||||||| || || || ||||| || || || |||||
Sbjct 330 GTATATATGACTGTTGGATGCAAACAAGCGATCGAACTTGCGGTCAG-TATCCTGGCTAA 388
Query 404 ACCGAAAGCCAACGTTTTGCTTCCGAGTCCCGGCTTCCCATGGGACCTAGTCCGCTCCAT 463
||| ||||||||| | ||||||||||| || ||||||||||||||| |||||| ||| ||
Sbjct 389 ACCCAAAGCCAACATCTTGCTTCCGAGGCCTGGCTTCCCATGGGACATAGTCCACTCTAT 448
Query 464 CTACAAGAACCTTGAGGTCCGCCA-CTAT-AATTTCCTTCCAGAAAAGA-ACTTTGAAAT 520
|||||| |||||||||||||| | ||| || ||| | || | ||||| ||||||| ||
Sbjct 449 CTACAAAAACCTTGAGGTCCG-AAGGTATGAA-TTCATCCCCG-AAAGAGACTTTGAGAT 505
Query 521 CGACTTT-GATAGCGTC-CGAGCGCTCGTGGACGAGAACACATTTGCCATATTTATAATC 578
|| ||| || |||||| | || | | | || |||||||| ||||| ||||||||||||
Sbjct 506 TGA-TTTCGACAGCGTCAC-AGAGATGGCAGATGAGAACACGTTTGCGATATTTATAATC 563
Query 579 AACCCCCACAACCCCAATGGTAAC-ACCTACTCCGAGGCTCATCTCAAACAGCTGGCTGA 637
||||| ||||| |||||||| ||| | |||| | ||||||||||| || ||||| ||| |
Sbjct 564 AACCCTCACAATCCCAATGGGAACTA-CTACACTGAGGCTCATCTTAAGCAGCTCGCT-A 621
Query 638 -ACTGGCTAAGGAACTCAAGATTATGGTGGTTTCTGACGAGGTTTTTAGATGGACAC-TC 695
| |||||| ||||||| ||| ||||||||||| || || || | | ||||||| | |
Sbjct 622 CATTGGCTAGGGAACTCGGGATAATGGTGGTTTCGGATGAAGTATATCGATGGAC-CGTG 680
Query 696 TTTGGTAGTAACCCTTTTGTTCCTATGGGAAAATTCTCGTCGATCGTACCAGTGGTTACA 755
|| || ||||| || |||||||| ||||| |||||||| ||||| ||||| ||| |||||
Sbjct 681 TTCGGGAGTAATCCATTTGTTCCAATGGGGAAATTCTCCTCGATAGTACCCGTGATTACA 740
Query 756 CTCGGATCCATATC-AAAGGGATGGAAAGTCCCAGGATGGCGAACTGGTTGGCTCACGCT 814
||||| ||||| || ||| ||||||| ||||||||||||||||| || |||||| | ||
Sbjct 741 CTCGGGTCCATCTCTAAA-GGATGGATTGTCCCAGGATGGCGAACAGGCTGGCTCGCACT 799
Query 815 ACATGATCTAGACGGTGT-CTTCAGAAAC-ACCAAGGTCTTACAAGCTGCTCAAG-ATTT 871
||| |||||| | ||||| ||| || | | |||||||||||| |||||||| ||| ||||
Sbjct 800 ACACGATCTAAATGGTGTCCTT-AG-ATCTACCAAGGTCTTAAAAGCTGCTAAAGAATTT 857
Query 872 TCTCCAGATAAAC-AATAACCCTCCGACAGTTATCCAGGCGGCTATTCCTGA-CATCTTG 929
| | |||| || ||| || || || |||||||||||||||||||| | |||||||
Sbjct 858 T-TGGAGAT-TACTTCTAAACCACCAACTGTTATCCAGGCGGCTATTCC-CACCATCTTG 914
Query 930 GAGAAAACTCCTCAAGAGTTTTTTGATAAG-AGGCAGAGTTTTCTGAAAGATAAAGTAGA 988
|||||||||||||||||||| || || || |||||||||||||||||||||||||| ||
Sbjct 915 GAGAAAACTCCTCAAGAGTTCTTCAAT-AGCAGGCAGAGTTTTCTGAAAGATAAAGTGGA 973
Query 989 ATTTGGTTATTCTAAGCTCAAGTACATTCCTAGCCTCACTTGCTACATGAAACCCGAAGC 1048
||||| ||||||||||||||| |||| || | |||||| |||||||||||||| |||||
Sbjct 974 TTTTGGATATTCTAAGCTCAAGCACATACCAACCCTCACCTGCTACATGAAACCTGAAGC 1033
Query 1049 CTGCACCTTCTTATGGACCGAGCTTGATTTATCG-AGCTTTGTGGACATCGAAGACGATC 1107
|||||||||||||||||| |||| || || | | ||||| ||||| ||||||||||
Sbjct 1034 ATGCACCTTCTTATGGACCAAGCTGGACCCATTGCA-TTTTGTAGACATTGAAGACGATC 1092
Query 1108 AAGACTTT-TGCAATAAGCTTGCTAAAGAAGAAAACCTCGTCGTTTTACCAGGGATTGCA 1166
| || ||| |||| ||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 1093 ACGA-TTTCTGCAGGAAGCTTGCTAAGGAAGAAAACCTCGTTGTTTTACCGGGGATTGCA 1151
Query 1167 TTCAGTCAGAAGAACTGGTTGAGGCATTCTATCGATATGGAGACTCCG-GTATTGGAGGA 1225
|| | ||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 1152 TTTGGCCAGAAGAACTGGTTGAGGCATTCTATCGACATGGAGACTCCTAG-ATTGGAGGA 1210
Query 1226 TGCATTGGAAAGATTGAAGAGCTTCTGCGATCGCCATTCCAACAAAA---AAGCTCCCCT 1282
|||||| || ||||||||||||||||| || ||||||||| | | ||||| | ||
Sbjct 1211 TGCATTTGATAGATTGAAGAGCTTCTGTGAACGCCATTCCGTTATAGTTGAAGCTTCACT 1270
Query 1283 CAAAGACGTCAATGGTGTTAAGTAAAGGGTCAATATGGTTATTTGCCTAAGTCATTTACG 1342
|||| ||||||||| || || ||||||||| | | | | || | || ||| |
Sbjct 1271 AAAAGGCGTCAATGGCGTCAACTAAAGGGTCTA-A-G-TC-TT--C-TA---CAT--A-- 1316
Query 1343 TATGCTATAATGATAAATAAATGAGTG-TTTCTTGGTTTGAGGTAAATCATGAACACTTT 1401
| |||||||| |||||| || ||| ||| ||| |||||| | |||||||||||| ||
Sbjct 1317 T--GCTATAATAATAAATG--TGGGTGGTTTATTGATTTGAGATCAATCATGAACACCTT 1372
Query 1402 AGTGTATTTGTAACAAATAAAATGGGTGCACTTAAT-ATCAA-TCGTGTGTAATGTTTTC 1459
|| || ||||||||||||| | |||| ||||| | | || |||| |||||||||||
Sbjct 1373 CGT--ATCTGTAACAAATAAATTTGGTGTACTTA-TGACCATGTCGTC-GTAATGTTTTC 1428
Query 1460 TCATAGTTTGCTATATCTTTG-TGTATATCTA 1490
||||||||||| | || || | ||||| ||||
Sbjct 1429 TCATAGTTTGC-A-AT-TTCGATGTATTTCTA 1457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61249113960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5