BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23620.2
Length=1117
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492505 jgi|Araly1|492505|fgenesh2_kg.7__1938__AT4G23620.1 778 0.0
> Ahg492505 jgi|Araly1|492505|fgenesh2_kg.7__1938__AT4G23620.1
Length=1221
Score = 778 bits (421), Expect = 0.0
Identities = 444/455 (98%), Gaps = 2/455 (0%)
Strand=Plus/Plus
Query 16 tctctctctcACTGGTAAAAAGCAAACAATGTTGCTCCGTCGTGCAAAAACACTACCCAA 75
|||||||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1 TCTCTCTCTCGCTGCTAAAAAGTAAACAATGTTGCTCCGTCGTGCAACAACACTACCCAA 60
Query 76 AACCCTACAAAACCTCCGGTTATTCTCTCCGGCGGCGAACGCAGCTCTATCCCTAGATCA 135
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 61 AACCCTACAAAACCTCCGGTTATTCTCTCCGGCGGCGAACGCAGCTCTATCACTCGATCA 120
Query 136 TATCCAAGAAACCCAATTAACTTACCTCCCTGGATTCCCTCGACCCGATCCAAAACACGC 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATCCAAGAAACCCAATTAACTTACCTCCCTGGATTCCCTCGACCCGATCCAAAACACGC 180
Query 196 AGAGACGATCTTAGCCGTTCCAAGGTCTGTCTCCGGCAAGAGCATATCAGCGAAAGAGCG 255
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 AGAGACGATCTTAGCCGTTCCAAGGTCTGTCTCCGGCAAGAGCATATCGGCGAAAGAGCG 240
Query 256 TAAAGCGGGTCGGGTTCCTTCGATCATATTCGAACAAGAGGATGGACAACACGGAGGAAA 315
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 TAAAGCGGGTCGGGTTCCTTCGATCATATTCGAACAAGAAGATGGACAACACGGAGGAAA 300
Query 316 CAAGAGGCTTATTTCAGTTCAGACGAATCAGATCAGGAAGCTTGTGAATCATTTGGGTTA 375
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAAGAGACTTATTTCAGTTCAGACGAATCAGATCAGGAAGCTTGTGAATCATTTGGGTTA 360
Query 376 CTCTTTTTTCCTCTCTAGGCTCTTT-GATGTTGAGGTTCGAGCTGAGATTGGTTCTGATG 434
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 361 CTCTTTTTTCCTCTCTAGGCT-TTTCGATGTTGAGGTTCGAGCTGAGATTGGTTCTGATG 419
Query 435 AGGTTATTGAGAAAGTCAGAGCCTTGCCTAGAGCG 469
|||||||||||||||||||||||||||||||||||
Sbjct 420 AGGTTATTGAGAAAGTCAGAGCCTTGCCTAGAGCG 454
Score = 706 bits (382), Expect = 0.0
Identities = 512/569 (90%), Gaps = 31/569 (5%)
Strand=Plus/Plus
Query 509 ATTCATTTGCACTCTGGGACTGATGCTCCACTGAATGTGACATTCATAAGAGCGCCTCCA 568
||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||
Sbjct 455 ATTCATTTGCACTCTGGAACCGATGCTCCATTGAATGTGACATTCATAAGAGCGCCTCCA 514
Query 569 GGTGCTTTGTTGAAAGTTGATATCCCTCTTGTGTTCATTGGAGATGATGTTTCTCCTGGA 628
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 515 GGTGCTTTATTGAAGGTTGATATCCCTCTTGTGTTCATAGGAGATGATGTTTCTCCTGGA 574
Query 629 TTGAAGAAAGGAGCATCTCTGAATACGATTAAAAGAACAGTAAAGTTCCTATGCCCAGCA 688
|||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 575 TTGAAGAAAGGAGCATCTCTGAATACAATAAAAAGAACGGTAAAGTTCCTATGCCCAGCA 634
Query 689 GAGATTATCCCACCATATATAGAAGTAGATCTAAGCCAATTGGATATCGGACAAAAGCTA 748
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 635 GAGATTATCCCACCATATATAGAAGTAGATCTCAGCCAATTGGATATCGGGCAAAAGCTA 694
Query 749 GTAATGGGAGACCTCAAGGTTCATCCGGCTTTAAAGCTTATAAAGTCCAAAGACGAACCC 808
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 695 GTTATGGGAGACCTCAAGGTTCATCCGGCGTTAAAGCTTATAAAGTCCAAAGACGAACCC 754
Query 809 ATTGTTAAGGTCGCCGGAGGACGTGTCACTGACACGCAAAAGAAATCGTCTGACACGCAA 868
|||||||||||||| ||||||||||| | ||| |||||||||
Sbjct 755 ATTGTTAAGGTCGCTGGAGGACGTGT----G--------------TCG---GACACGCAA 793
Query 869 AAGAAATAACACCGGTGAGTCATATTAACTGCGATTATCCGGTGCAATCTCCAAATGTTG 928
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 794 AAGAAATAACACCAGTGAGTCATATTAACTGTGATTATCCGGTGCAATCTCCAAATGTTG 853
Query 929 A-C---C-AAAAATGAATGGATCGATCTTCTTAGAACTCTAAAGGTCCTTTCGGATGGAG 983
| | ||||||||||||||||||||||||||||||| || | |||||| ||||||||
Sbjct 854 CTCATACGAAAAATGAATGGATCGATCTTCTTAGAACTC-AA-GATCCTTTAGGATGGAG 911
Query 984 GTTTCTTTATGTGTTATTATTAGTGTTGCCAGA-AGATGAAATATTTCCTATCTTTTGAT 1042
||||||| ||||||||||||||||||||| || ||| | |||||| | |||||||||||
Sbjct 912 TTTTCTTTTTGTGTTATTATTAGTGTTGCCGGAGAGACGGAATATT-CTTATCTTTTGAT 970
Query 1043 TCTACAATGCATTTAT-TTTCTATTCACA 1070
|||||||||||||||| |||||||| |||
Sbjct 971 TCTACAATGCATTTATATTTCTATTTACA 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41630225364
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5