BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23630.1
Length=1790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945747 jgi|Araly1|945747|scaffold_701976.1 1373 0.0
> Ahg945747 jgi|Araly1|945747|scaffold_701976.1
Length=860
Score = 1373 bits (743), Expect = 0.0
Identities = 835/876 (95%), Gaps = 20/876 (2%)
Strand=Plus/Plus
Query 578 AAGATCTTTGCGTTTTGAAACGATGGCGGAAGAACATAAGCATGATGAATCTGTGATCGC 637
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 AAGATC-TTGCG-TTTGAAACGATGGCGGAAGAACATAAGCATGAAGAATCTGTGATCGC 58
Query 638 TCCTGAGCCAGCTGTTGAGGTTGTGGAGAGAGAATCGTTGATGGATAAGATATCGGAGAA 697
|||||||||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct 59 TCCTGAGCCAGCTGTTGAGGTTGTGGAGAGAGAA-C-----TGGACAAGATATCGGAGAA 112
Query 698 GATCCATCACGGTGGTGATTCTTCTTCGTCTTCTTCATCTTCTGATGATGAAGACGAGAA 757
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 113 GATCCATCACGGTGGTGATTCTTCTTCGTCATCTTCATCTTCTGATGATGAAGACGAGAA 172
Query 758 GAAGAAGACTAAGAAGCCCTCTTCTCCTTCGTCTTCTATGAAATCGAAAGTTTACCGCTT 817
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 173 GAAGAAGACTAAGAAGCCGTCTTCTCCTTCG---TCTATGAAATCGAAAGTTTACCGCTT 229
Query 818 GTTCGG-ACGAGAGCAGCCTGTTCATAAGGTTCTCGGCGGTGGAAAGCCGGCTGATATAT 876
|||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 230 GTTCGGTA-GAGAGCAGCCTGTTCATAAGGTTCTTGGCGGTGGAAAGCCGGCTGATATAT 288
Query 877 TCATGTGGAAGAACAAGAAGATGTCTGGTGGTGTACTTGGTGGTGCTACAGCTGCTTGGG 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TCATGTGGAAGAACAAGAAGATGTCTGGTGGTGTACTTGGTGGTGCTACAGCTGCTTGGG 348
Query 937 TTGTGTTTGAATTGATGGAGTACCATCTTCTCACTCTGCTTTGCCACGTGATGATTGTTG 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TTGTGTTTGAATTGATGGAGTACCATCTTCTCACTCTGCTTTGCCACGTGATGATTGTTG 408
Query 997 TTCTCGCTGTGCTGTTTTTGTGGTCTAATGCCACTATGTTCATTAACAAGTCCCCTCCAA 1056
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 409 TTCTTGCTGTGCTGTTTTTGTGGTCTAATGCCACCATGTTCATTAACAAGTCCCCACCAA 468
Query 1057 AGATTCCTGAAGTTCATATCCCTGAAGAACCTATTCTTCAGCTTGCGTCTGGGCTCAGAA 1116
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 469 AGATTCCTGAAGTTCATATCCCTGAAGAGCCTATTCTTCAGCTTGCGTCTGGGCTCAGAA 528
Query 1117 TCGAGATCAACCGTGGATTCTCTTCTCTCCGTGAAATTGCATCAGGAAGGGATCTCAAGA 1176
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 529 TCGAGATCAACCGTGGATTCTCTTCTCTTCGTGAAATTGCATCTGGAAGGGATCTCAAGA 588
Query 1177 AATTCCTCATTGCTATTGCCGGGTTATGGGTTCTCTCAATCTTGGGCGGTTGCTTCAACT 1236
|||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 589 AATTCCTCATTGCTATTGCCGGTTTGTGGGTTCTATCAATCTTGGGTGGTTGCTTCAACT 648
Query 1237 TCTTGACATTGGCATACATAGCTCTTGTGTTGCTCTTCACGGTTCCTCTTGCCTACGACA 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 649 TCTTGACATTGGCATACATAGCTCTTGTGTTGCTCTTCACGGTTCCTCTTGCCTATGACA 708
Query 1297 AGTATGAAGACAAAGTCGACCCATTAGGTGAGAAAGCAATGATCGAGCTCAAGAAGCAGT 1356
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 709 AGTATGAAGACAAAGTCGACCCATTAGGTGAGAAAGCGGTGATCGAGCTCAAAAAGCAGT 768
Query 1357 ATGCAGTGTTGGATGAGAAGGTGTTGAGCAAGATCCCACTTGGGCCG-TTGAAGAACAAG 1415
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 769 ATGCAGTGTTGGATGAGAAGGTGTTGAGCAAGATCCCACT-GGGCCCATTGAAGAACAAG 827
Query 1416 AAGAAAGATTAGGGGTTTACACAAG--GTTGTCCGT 1449
||||||||||||| ||||||| | |||||||||
Sbjct 828 AAGAAAGATTAGG--TTTACACT-GCTGTTGTCCGT 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67191192180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5