BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23640.1
Length=2847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945746 jgi|Araly1|945746|scaffold_701975.1 3886 0.0
Ahg947559 jgi|Araly1|947559|scaffold_703788.1 69.4 1e-10
> Ahg945746 jgi|Araly1|945746|scaffold_701975.1
Length=2371
Score = 3886 bits (2104), Expect = 0.0
Identities = 2277/2363 (96%), Gaps = 2/2363 (0%)
Strand=Plus/Plus
Query 174 TTACTCGCCGGCGGCTTGAATCATGGCTGATAGGAGAAACAGGTGTAACCAGATCCTCCT 233
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTACTCGCCGGCGGCTTAAATCATGGCTGATAGGAGAAACAGGTGTAACCAGATCCTCCT 60
Query 234 TTTAGCATACCAGAGTTTTGGCTTAGTGTTTGGAGATTTGAGTATTTCTCCTCTCTATGT 293
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TTTAGCATATCAGAGTTTTGGCTTAGTGTTTGGAGATTTGAGTATTTCTCCTCTCTACGT 120
Query 294 GTATAAATGTACATTCTACGGAGGATTGAGACATCACCAAACAGAAGATACGATATTTGG 353
|||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 121 GTATAAATGTACTTTCTACGGAGGATTGAAACATCACCAAACAGAAGATACCATATTTGG 180
Query 354 CGCGTTTTCTTTGATATTTTGGACCATCACTCTCCTTTCACTCATCAAGTACATGGTTTT 413
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGCCTTTTCTTTGATATTTTGGACCATCACTCTCCTTTCACTCATCAAGTACATGGTTTT 240
Query 414 TGTGTTAAGTGCAGATGACAATGGTGAAGGAGGGATCTTTGCTTTGTATGCTTTGCTCTG 473
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGTATTAAGTGCAGATGACAATGGTGAAGGAGGGATCTTTGCTTTGTATGCTTTGCTCTG 300
Query 474 CAGACACGCAAGATTTTCTTTGCTTCCAAATCAGCAAGCTGCTGATGAAGAAATCTCTAC 533
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 301 CAGACACGCTAGATTTTCTTTGCTTCCCAATCAGCAAGCTGCTGATGAAGAAATCTCCAC 360
Query 534 ATACTATGGTCCTGGAGATGCAAGTAGAAATTTGCCTAGTTCTGCTTTCAAAAGCCTTAT 593
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 ATACTATGGCCCTGGAGATGCAAGTAGAAATTTGCCTGGTTCTGCTTTCAAAAGCCTTAT 420
Query 594 AGAACGAAATAAAAGATCAAAAACTGCTTTGCTTGTTTTAGTCTTGGTAGGAACTTCCAT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAACGAAATAAAAGATCAAAAACTGCTTTGCTTGTTTTAGTCTTGGTAGGAACTTCCAT 480
Query 654 GGTAATAACCATCGGTGTCCTTACACCAGCAATTTCAGTCTCTTCGTCTATTGATGGCCT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGTAATAACCATCGGTGTCCTTACACCAGCAATTTCAGTCTCTTCGTCTATTGATGGCCT 540
Query 714 TGTGGCCAAGACAAGTCTGAAGCACAGTACTGTGGTCATGATAGCATGCGCTTTACTGGT 773
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 541 TGTGGCCAAGACAAGTCTGAAGCATAGTACTGTGGTCATGATAGCATGCGCTTTACTGGT 600
Query 774 TGGACTTTTTGTTCTGCAGCACCGTGGGACAAATAAAGTTGCCTTTCTATTTGCACCTAT 833
||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 601 TGGACTTTTCGTTCTGCAGCACCGTGGCACCAATAAAGTTGCCTTTCTCTTTGCACCTAT 660
Query 834 AATGATTTTGTGGTTGTTGATAATTGCAACTGCTGGTGTGTACAATATTGTGACTTGGAA 893
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 AATGATTTTGTGGTTGTTGATAATTGCAACTGTTGGTGTGTACAATATTGTGACTTGGAA 720
Query 894 CCCCAGTGTATACAAAGCCTTATCTCCCTACTATATCTATGTATTCTTTAGAGATACGGG 953
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 721 CCCCAGTGTATACAAAGCCTTATCTCCCTACTACATCTATGTATTCTTTAGAGACACTGG 780
Query 954 AATAGATGGATGGCTATCCCTTGGAGGCATTCTTTTATGCATCACAGGAACGGAGGCTAT 1013
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 781 AATAGATGGATGGCTATCCCTTGGAGGCATTCTTTTATGCATTACAGGAACGGAGGCTAT 840
Query 1014 CTTTGCTGAACTTGGCCAATTTACAGCCACATCTATAAGGTTTGCGTTTTGTTGTGTTGT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTTTGCTGAACTTGGCCAATTTACAGCCACATCTATAAGGTTTGCGTTTTGTTGTGTTGT 900
Query 1074 TTACCCGTGTCTGGTGCTTCAATACATGGGCCAAGCTGCGTTTTTATCAAAGAATTTTTC 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTACCCGTGTCTGGTGCTTCAATACATGGGCCAAGCTGCGTTTTTATCAAAGAATTTTTC 960
Query 1134 TGCTCTACCTTCAAGCTTTTATTCTTCCATTCCAGACCCATTTTTCTGGCCGGTTCTCAT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGCTCTACCTTCAAGCTTTTATTCTTCCATTCCAGACCCATTTTTCTGGCCGGTTCTCAT 1020
Query 1194 GATGGCTATGCTAGCTGCAATGGTCGCTAGTCAAGCAGTCATATTTGCCACGTTCTCGAT 1253
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 1021 GATGGCTATGCTGGCTGCAATGGTCGCAAGCCAAGCAGTCATATTTGCCACGTTCTCAAT 1080
Query 1254 TGTCAAACAATGCTATGCATTGGGATGCTTCCCGCGTGTGAAGATTGTTCACAAACCAAG 1313
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1081 TGTCAAACAATGCTATGCATTGGGATGCTTCCCGCGCGTGAAGATTGTTCACAAACCAAG 1140
Query 1314 ATGGGTCCTTGGCCAGATTTACATCCCTGAGATCAATTGGGTTGTCATGATCCTCACCCT 1373
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ATGGGTCCTTGGCCAAATTTACATCCCTGAGATCAATTGGGTTGTCATGATCCTCACCCT 1200
Query 1374 TGCTGTCACCATTTGTTTCCGAGACACTCGACACATAGCTTTTGCTTTTGGGCTCGCCTG 1433
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CACTGTCACCATTTGTTTCCAAGACACTCGACACATAGCTTTTGCTTTTGGGCTCGCCTG 1260
Query 1434 CATGACTCTAGCCTTTGTGACTACTTGGTTGATGCCTCTCATCATCAACTTTGTCTGGAA 1493
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1261 CATGACTCTAGCCTTTGTGACAACTTGGTTGATGCCTCTCATTATCAACTTTGTCTGGAA 1320
Query 1494 CCGTAATATCGTCTTCTCCGTCCTCTTCATCCTCTTCTTCGGGACCATAGAACTTATCTT 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1321 CCGTAATATCGTCTTCTCCGTCCTCTTCATCCTCTTCTTCGGGACCATAGAACTTGTCTT 1380
Query 1554 CGTTGCATCAGCCTTAGTCAAAATCCCTAAAGGAGGCTGGATCACTCTGCTCCTTTCCCT 1613
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1381 CGTTGCATCAGCCTTAGTCAAAATTCCTAAAGGAGGCTGGATCACTCTCCTCCTTTCCCT 1440
Query 1614 CTTCTTCACCTTCATCACATACGTATGGCATTACGGCAGCAGAAAGAAGTACCTATGCGA 1673
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1441 CTTCTTCACCTTCATCACATATGTATGGCATTACGGCAGCAGAAAGAAATACCTGTGCGA 1500
Query 1674 CCAGCACAACAAGGTCCCTATGAAATCAATACTAAGCCTTGGCCCGAGCCTCGGGATCAT 1733
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1501 CCAGCACAACAAGGTCCCTATGAAATCAATCCTAAGCCTTGGCCCGAGCCTTGGGATCAT 1560
Query 1734 CAAAGTCCCCGGGATGGGTCTTATCTACACAGAGCTCGCCAGCGGTGTTCCTGCCACATT 1793
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1561 CAAAGTCCCTGGGATGGGTCTTATCTACACCGAGCTCGCCAGCGGTGTTCCCGCCACATT 1620
Query 1794 TAAGCACTTTCTAACAAACTTACCGGCGTTCTACCAAGTTGTCGTCTTTGTCTGCTGCAA 1853
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TACTCACTTTCTAACAAACTTACCGGCGTTCTACCAAGTTGTCGTCTTTGTCTGCTGCAA 1680
Query 1854 AACTGTCCCTATCCCGTATGTGCCGCAGAAAGAACGGTACCTTATCGGCCGGATTGGACC 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 AACTGTCCCTATCCCGTATGTGCCGCAGAAAGAACGGTACCTTATCGGCCGGATTGGACC 1740
Query 1914 AAAAACATACAGGATGTACCGATGCATTATCCGAGCTGGCTACAAAGACGTGAACAAAGA 1973
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1741 GAAAACATACAGGATGTACCGATGCATTATCCGAGCCGGTTACAAAGACGTGAACAAAGA 1800
Query 1974 CGGAGACGACTTTGAAGACGAGCTGGTGATGAGCATCGCCGAGTTTATCCAGCTAGAATC 2033
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1801 CGGAGATGACTTTGAAGACGAGCTGGTGATGAGCATTGCCGAGTTTATCCAGCTAGAATC 1860
Query 2034 CGAAGGCTATGGTGGCTCAAACACTGACCGTTCGATTGACGGTCGGCTCGCTGTTGTGAA 2093
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1861 TGAAGGCTACGGTGGCTCAAACACTGACCGTTCGATTGATGGTCGGCTCGCTGTTGTGAA 1920
Query 2094 AGCCTCAAACAAGTTTGGGACAAGGCTGTCTCGGTCTATATCCGAAGCCAACATCGCAGG 2153
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1921 AGCCTCAAACAAGTTTGGGACAAGGCTGTCTCGGTCTATATCCGAGGCCAACATTGCAGG 1980
Query 2154 CAGCTCGAGATCACAGACAACAGTAACAAACAGCAAGTCTCCGGCTCTACTTAAACTGAG 2213
|||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1981 CAGCTCAAGATCACAGACAACAGTAACAAACAGCAAATCTCCGGCTCTACTTAGACTGAG 2040
Query 2214 AGCAGAGTATGAGCAAGAGCTTCCGAGGCTGAGCATGAGAAGGATGTTTCAGTTCAGACC 2273
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2041 AGCAGAGTATGAGCAAGAGCTTCCGAGACTGAGCATGAGAAGGATGTTTCAGTTCAGACC 2100
Query 2274 AATGGACACCAAGTTCAGGCAACCGCAGGTGAAGGAAGAGCTGTTTGATCTGGTGAATGC 2333
||||||||| || ||||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct 2101 AATGGACACTAAATTCAGGCAACCACAGGTGAAGGAGGAGCTCTTTGATCTGGTGAACGC 2160
Query 2334 TAAGGACGCTGAAGTGGCTTACATTGTCGGACACGGTCACGTGAAGGCAAAGCGGAACTC 2393
||||||||| |||||||| |||||||| |||||||||||||||||||| ||||| |||||
Sbjct 2161 TAAGGACGCAGAAGTGGCATACATTGTTGGACACGGTCACGTGAAGGCGAAGCGCAACTC 2220
Query 2394 AGTGTTTGTAAAACAGCT-GGTGGTAAACGTAGCGTACTCGTTCTTGAGGAAGAATTGCC 2452
|| ||||| |||| | | ||| ||||||| || ||||||||||||||||||||||||
Sbjct 2221 GGTATTTGTGAAAC-GTTTGGTCATAAACGTGGCTTACTCGTTCTTGAGGAAGAATTGCA 2279
Query 2453 GGAGCCCAGGCGTGATGTTGAATATTCCTCACATTTGTTTGATCAAAGTGGGCATGAACT 2512
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 GAAGCCCAGGCGTGATGTTAAATATTCCTCACATTTGTTTGATCAAAGTGGGCATGAACT 2339
Query 2513 ATTACTTGTAAGTGAGAGttttt 2535
||||||||||| |||||||||||
Sbjct 2340 ATTACTTGTAACTGAGAGTTTTT 2362
> Ahg947559 jgi|Araly1|947559|scaffold_703788.1
Length=205
Score = 69.4 bits (37), Expect = 1e-10
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Minus
Query 2805 ATGTCAGAAGTGGGATTTGAACCCACGCCCTCTTACGAGGACC 2847
|||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 99 ATGTCAAAAGTGGGGTTTGAACCCACGCCCTCTTACGAGGACC 57
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107452581145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5