BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23650.1
Length=1843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492503 jgi|Araly1|492503|fgenesh2_kg.7__1936__AT4G23650.1 2510 0.0
> Ahg492503 jgi|Araly1|492503|fgenesh2_kg.7__1936__AT4G23650.1
Length=1632
Score = 2510 bits (1359), Expect = 0.0
Identities = 1570/1666 (94%), Gaps = 38/1666 (2%)
Strand=Plus/Plus
Query 1 TTCTCTCTCGATTGACTTTATTGACTGAGAGAAA-GCTTTTGACAATGGGCCACAGACAC 59
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1 TTCTCTCTCGATTGACTTTATTGACTGAGAGAAAAGCTTT-GACAATGGGCCACAGACAC 59
Query 60 AGCAAGTCCAAATCCTCCGATCCGCCACCGTCCTCCTCCTCCTCTTCCTCCGGCAACGTA 119
|||||||| ||||||||||||||||||||||| |||||||| |||||||||||| | |
Sbjct 60 AGCAAGTCTAAATCCTCCGATCCGCCACCGTCTTCCTCCTCGTCTTCCTCCGGC--C--A 115
Query 120 GTCCACCATGTTAAACCTGCCGGAGAACGCCGCGGATCATCCGGTTCCGGAACCGTCGGA 179
||| ||| |||||| ||||||||||| ||||| || || ||||||||| ||||
Sbjct 116 --CCA---TGTCCAACCTGTTGGAGAACGCCGTGGATCGTCAGGCGCCGGAACCGGCGGA 170
Query 180 TCGTCAGGCTCCGGAACAGGCGGATCTCGTTCCACCACATCTACTCAGCAGAATGGTCGG 239
|| | | || ||| | | | | || | |||||||||||||||||||||
Sbjct 171 TCC-C-GT-TC---AAC-G----A-C-C-----AC-A--TCTACTCAGCAGAATGGTCGG 209
Query 240 ATCTTAGGTCGGCCGATGGAGGAA-GTACGGAG-AACCTATGAGTTTGGTCGTGAGCTTG 297
||||||||||||||||||||| || || || || |||||||||||||||||||||||| |
Sbjct 210 ATCTTAGGTCGGCCGATGGAG-AACGTTCG-AGGAACCTATGAGTTTGGTCGTGAGCTAG 267
Query 298 GTCGTGGCCAGTTTGGTGTCACGTACCTCGTAACTCACAAAGAGACGAAACAAC-AGGTC 356
||||||||||||| || || || || || || |||||||||||||| || |||| | ||
Sbjct 268 GTCGTGGCCAGTTCGGCGTTACCTATCTTGTTACTCACAAAGAGACCAAGCAACTAT-TC 326
Query 357 GCTTGCAAGTCAATCCCTACGCGCCGCCTTGTTCACAAAGACGACATTGAAGATGTTCGC 416
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 327 GCTTGCAAGTCAATCCCTACGCGCCGACTTGTTCACAAAGACGACATTGAAGATGTTCGC 386
Query 417 CGTGAAGTCCAGATTATGCACCATCTCAGCGGTCACCGGAACATAGTGGACTTGAAGGGA 476
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 387 CGTGAAGTCCAGATTATGCACCATCTCAGCGGCCACCGGAACATAGTGGATTTGAAGGGA 446
Query 477 GCCTACGAGGACAGACACTCTGTGAATCTGATAATGGAGTTGTGTGAAGGAGGGGAATTG 536
|||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||
Sbjct 447 GCCTACGAGGACAGACACTCGGTGAATCTCATAATGGAGCTGTGTGAAGGAGGGGAATTG 506
Query 537 TTCGATAGGATCATTTCTAAAGGTCTTTACTCAGAGAGAGCTGCTGCGGATTTGTGTAGG 596
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 507 TTCGATAGGATCATAGCTAAAGGTCTTTACTCAGAGAGAGCTGCTGCGGATTTGTGCAGG 566
Query 597 CAGATGGTGATGGTTGTGCATAGTTGTCATTCTATGGGTGTAATGCACCGAGACTTGAAG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 CAGATGGTGATGGTTGTGCATAGTTGTCATTCTATGGGTGTAATGCACCGAGACTTGAAG 626
Query 657 CCCGAAAACTTTCTCTTTCTTAGTAAAGATGAGAACTCACCATTGAAAGCTACAGACTTT 716
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 627 CCCGAAAACTTTCTCTTTCTTAGTAAAGATGAGAACTCCCCATTGAAAGCTACAGACTTT 686
Query 717 GGTCTCTCTGTCTTCTTCAAGCCAGGTGATAAGTTTAAGGATCTTGTTGGAAGTGCATAC 776
|||||||| || |||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 687 GGTCTCTCGGTTTTCTTCAAGCCAGGCAATAAGTTTAAGGATCTTGTTGGAAGTGCCTAC 746
Query 777 TATGTTGCCCCAGAAGTTCTAAAACGGAACTATGGACCAGAGGCTGATATCTGGAGTGCT 836
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 TATGTTGCCCCGGAAGTTCTAAAACGGAACTATGGACCAGAGGCTGATATCTGGAGTGCT 806
Query 837 GGTGTGATTCTATACATCCTTCTCAGTGGTGTTCCGCCTTTCTGGGGAGAAAATGAAACG 896
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 807 GGCGTGATTCTTTACATCCTTCTCAGTGGTGTCCCGCCTTTCTGGGGAGAAAATGAAACG 866
Query 897 GGGATCTTTGATGCCATTCTTCAAGGGCAACTTGATTTTTCAGCTGATCCATGGCCAGCA 956
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 867 GGGATCTTTGATGCCATTCTTCAAGGGCAGCTTGATTTTTCAGCTGATCCATGGCCAGCA 926
Query 957 CTATCAGATGGTGCCAAAGATCTTGTGAGGAAAATGTTAAAATATGACCCTAAAGATCGG 1016
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 927 CTATCAAATGGTGCCAAAGATCTTGTGAGGAAAATGTTAAAGTATGACCCTAAAGATCGG 986
Query 1017 CTTACAGCTGCGGAAGTGCTAAATCATCCGTGGATTAGAGAAGATGGGGAGGCATCAGAC 1076
||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 987 CTTTCAGCTGCGGAAGTGCTAAATCATCCGTGGATTAGAGAAGACGGGGAGGCGTCAGAC 1046
Query 1077 AAACCGCTTGACAATGCGGTGTTATCCAGGATGAAACAATTCCGGGCGATGAACAAACTa 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 AAACCGCTTGACAATGCGGTGTTATCCAGGATGAAACAATTCCGGGCGATGAACAAACTA 1106
Query 1137 aaaaaaaTGGCCCTGAAGGTTATCGCTGAGAACCTTTCTGAAGAAGAAATCATTGGTCTT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 AAAAAAATGGCCCTGAAGGTTATCGCTGAGAACCTTTCTGAAGAAGAAATCATTGGTCTT 1166
Query 1197 AAAGAGATGTTCAAATCTCTAGACACTGATAACAATGGAATAGTCACCTTGGAGGAATTG 1256
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1167 AAAGAGATGTTCAAATCTCTAGACACTGATAACAACGGAATAGTCACCTTGGAGGAATTG 1226
Query 1257 AGAACCGGTCTCCCAAAACTTGGTTCAAAGATCTCTGAAGCTGAAATAAGGCAGTTAATG 1316
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1227 AGAACCGGTCTCCCCAAACTTGGTTCGAAGATCTCTGAGGCTGAAATAAGGCAGTTAATG 1286
Query 1317 GAAGCAGCTGATATGGATGGAGATGGATCAATTGATTACTTGGAGTTTATATCAGCCACA 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 GAAGCAGCTGATATGGATGGAGATGGATCAATTGATTACTTGGAGTTTATATCAGCCACA 1346
Query 1377 ATGCATATGAACAGAATCGAACGTGAGGATCACTTGTACACCGCATTCCAGTTCTTTGAC 1436
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1347 ATGCATATGAACAGAATCGAACGTGAGGATCACTTGTACACCGCTTTCCAGTTCTTTGAC 1406
Query 1437 AATGACAACAGCGGCTACATAACAATGGAAGAGCTAGAGCTAGCCATGAAGAAATACAAC 1496
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1407 AATGACAACAGCGGCTACATAACAATGGAAGAACTAGAGCTAGCCATGAAGAAATACAAC 1466
Query 1497 ATGGGTGATGATAAATCCATCAAAGAGATCATTGCTGAAGTAGACACCGATCGTGACGGA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 ATGGGTGATGATAAATCCATCAAAGAGATCATTGCTGAAGTAGACACCGATCGTGACGGA 1526
Query 1557 AAAATCAACTACGAAGAATTTGTAGCGATGATGAAGAAGGGAAATCCAGAATTGGTGCCA 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 AAAATCAACTACGAAGAATTTGTAGCGATGATGAAGAAGGGAAATCCAGAATTGGTGCCA 1586
Query 1617 AACCGACGCAGAATGTGAGAGATCTTTTGATGTTGTTTGTTTGTTT 1662
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 AACCGACGCAGAATGTGAGAGATCTTTTGATGTTGTTTGTTTGTTT 1632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69209975165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5