BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23660.3
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492502 jgi|Araly1|492502|fgenesh2_kg.7__1935__AT4G23660.1 1447 0.0
> Ahg492502 jgi|Araly1|492502|fgenesh2_kg.7__1935__AT4G23660.1
Length=1612
Score = 1447 bits (783), Expect = 0.0
Identities = 898/953 (94%), Gaps = 10/953 (1%)
Strand=Plus/Plus
Query 32 GTTGCTCTCTGGCAACAATTTCTCTCAAAGATGGCGTTTTTTGGGCTCTCCCGTGTTTCA 91
||| || || ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 138 GTTTCTTTCAGGCAACAATTTCTCTCAAAGATGGCGTTTTTTGGGCTGTCCCGTGTTTCA 197
Query 92 AGACGGTTGTTGAAATCTTCCGTCTCCGTAACTCCATCTTCTTCCTCTGCTCTTTTGCAA 151
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 198 AGACGGTTGTTGAAATCTTCCGTCTCCGTAACTCCATCTTCTTCCTTTGCTGTTTTGCAA 257
Query 152 TCACAACATAAATCCTTGTCCAATCCTGTGACTACCCATTACACAAATCCTTTCACTAAG 211
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 258 TCACAACATAAATCCTTGTCCAATCCTGTTACTACCCATTACACAAATCCTTTTACTAAG 317
Query 212 TGTTATCCTTCATGGAATGATAATTACCAAGTATGGAGTAAA-GGAAGAGAATTGCATCA 270
| |||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 318 TATTATCCTTTATGGAATGATAACCACCAAGTATGGAGTAAAGGGAAG-GAATTGCATCA 376
Query 271 GGAGAAGTTTTTTGGTGTTGGTTGGAATTACAGATTAATTTGTGGAATGTCGTCGTCTTC 330
|||||||||| |||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct 377 GGAGAAGTTTCTTGGTGTTGGCTGGAATTACAGATTAGTTGGTGGAATGTCGTCGTCTTC 436
Query 331 TTCGGTTTTGGAGGGAAAGCCGAAGAAAGATGATAAGGAGAAGAGTGATGGTGTTGTTGT 390
||||||||||||||||||||| ||||||||||| ||||||| |||||| || | |||
Sbjct 437 TTCGGTTTTGGAGGGAAAGCCTAAGAAAGATGACAAGGAGATGAGTGA---TG--G-TGT 490
Query 391 TAAGGAAGCTTCTTGGATAGATTTGTATTTACCAGAAGAAGTTAGAGGTTATGCTAAGCT 450
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 491 TAAGGAAGCTTCTTGGATTGATTTGTATTTGCCTGAAGAAGTTAGAGGTTATGCTAAGCT 550
Query 451 TGCTCGATTGGATAAACCCATTGGAACTTGGTTGCTTGCGTGGCCTTGTATGTGGTCGAT 510
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 551 TGCTCGATTGGATAAACCCATTGGCACTTGGTTGCTTGCTTGGCCTTGTATGTGGTCGAT 610
Query 511 TGCGTTGGCTGCTGATCCTGGAAGCCTTCCAAGTTTTAAATATATGGCTTTATTTGGTTG 570
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 611 TGCGTTGGCTGCTGATCCTGGAAGCCTTCCAAGTTTTAAATATATGGCGTTATTCGGTTG 670
Query 571 CGGAGCATTACTTCTTAGAGGTGCTGGTTGTACTATAAATGATCTGCTTGATCAGGACAT 630
|||||| |||||||||||||||| || ||||| || |||||||||||||||||||||||
Sbjct 671 TGGAGCACTACTTCTTAGAGGTGCCGGCTGTACAATTAATGATCTGCTTGATCAGGACAT 730
Query 631 AGATACAAAGGTTGATCGTACAAAACTAAGACCTATCGCCAGTGGTCTTTTGACACCATT 690
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 731 AGATCCAAAGGTTGATCGTACAAGACTAAGACCTATCGCCAGTGGTCTTTTGACACCATT 790
Query 691 TCAAGGGATTGGATTTCTCGGGCTGCAGTTGCTTTTAGGCTTAGGGATTCTTCTCCAACT 750
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TCAAGGAATTGGATTTCTTGGGCTGCAGTTGCTTTTAGGCTTAGGGATTCTTCTCCAACT 850
Query 751 TAACAATTACAGCCGTGTTTTAGGGGCTTCATCTTTGTTACTTGTCTTTTCCTACCCACT 810
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 851 TAACAATTACAGCCGTGTTTTAGGGGCTTCATCTTTGTTACTTGTCTTCTCCTACCCACT 910
Query 811 TATGAAGAGGTTTACATTTTGGCCTCAAGCCTTTTTAGGTTTGACCATAAACTGGGGAGC 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 TATGAAGAGGTTTACATTTTGGCCTCAAGCCTTTTTAGGTTTGACCATAAACTGGGGAGC 970
Query 871 ATTGTTAGGATGGACTGCAGTTAAAGGAAGCATAGCA-CCATCTATTGTACTCCCTCTCT 929
||||||||||||||| || || ||||||||||||| | ||| || ||||||||||||| |
Sbjct 971 ATTGTTAGGATGGACCGCTGTAAAAGGAAGCATAG-ATCCAGCTGTTGTACTCCCTCTTT 1029
Query 930 ATCTCTCCGGAGTCTGCTGGACCCTTGTTTATGATACTATTTATGCACATCAG 982
||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1030 ATCTCTCAGGAGTCTGCTGGACCCTTGTTTATGATACTATTTATGCGCATCAG 1082
Score = 702 bits (380), Expect = 0.0
Identities = 464/502 (92%), Gaps = 15/502 (3%)
Strand=Plus/Plus
Query 1049 GACAAAGAAGATGATGTAAAAGTTGGTGTTAAGTCAACAGCCCTTAGATTCGGTGATAAT 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GACAAAGAAGATGATGTAAAAGTTGGTGTTAAGTCAACAGCCCTTAGATTCGGTGATAAT 1142
Query 1109 ACAAAGCTTTGGTTAACTGGATTTGGCACAGCATCCATAGGTTTTCTTGCACTTTCTGGA 1168
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1143 ACAAAGCTTTGGTTAACTGGATTTGGTACAGCATCCATGGGCTTTCTTGCACTTTCTGGA 1202
Query 1169 TTCAGTGCAGATCTCGGGTGGCAATATTACGCATCACTGGCCGCTGCATCAGGACAGTTA 1228
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1203 CTCTGTGCAGATCTCGGGTGGCAATATTACGCATCACTGGCCGCTGCATCAGGACAGCTA 1262
Query 1229 GGATGGCAAATAGGGACAGCTGACTTATCATCTGGTGCTGACTGCAGTAGAAAATTTGTG 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 GGATGGCAAATAGGGACAGCTGACTTATCATCTGGTGCTGACTGCAGTAGAAAATTTGTG 1322
Query 1289 TCGAACAAGTGGTTTGGTGCTATTATATTTAGTGGAGTTGTACTTGGAAGAAGTTTTCAA 1348
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1323 TCAAACAAGTGGTTTGGTGCTATCATATTTAGTGGAGTTGTACTTGGAAGAAGTTTGCAA 1382
Query 1349 TAAAGACTCTCTCTCTGTCAACGAATGAGGATGAAGCTGTAGTGTGAGGAACCTATATAT 1408
||| ||| |||||| | | ||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1383 TAA-GACACTCTCTGT-T-AACGAATGAGGATGAAGCTGTAGAATGATGAACCTATATAT 1439
Query 1409 GAAGAATTGAAGTAGACTTT-TGAGACACACT-GTAAGTGAAACAGAGGACATGGTCTTG 1466
|||||||||||||||||| | | ||| ||| | | ||||| |||||||||||||||||||
Sbjct 1440 GAAGAATTGAAGTAGACTCTAT-AGAGACAGTTG-AAGTGGAACAGAGGACATGGTCTTG 1497
Query 1467 CTACAAAGTGGGTCTCCTTCAGGATTGAAATGATCAAGGAGCCATTGCCAGAAAAGCTGA 1526
|||||||||||||||| ||||||| |||| | | ||||||||| ||| |||||||
Sbjct 1498 CTACAAAGTGGGTCTCTTTCAGGACCGAAA-G-----G-AGCCATTGC-AGAGAAGCTGA 1549
Query 1527 AACTTAACTCTTTTAGATTAGT 1548
||||| ||||||||||||||||
Sbjct 1550 AACTTTACTCTTTTAGATTAGT 1571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65400950665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5