BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23670.1
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945743 jgi|Araly1|945743|scaffold_701972.1 743 0.0
Ahg492500 jgi|Araly1|492500|fgenesh2_kg.7__1933__AT4G23680.1 652 0.0
Ahg484409 jgi|Araly1|484409|fgenesh2_kg.5__401__AT3G26460.1 394 6e-109
Ahg935860 jgi|Araly1|935860|scaffold_500051.1 257 8e-68
> Ahg945743 jgi|Araly1|945743|scaffold_701972.1
Length=499
Score = 743 bits (402), Expect = 0.0
Identities = 459/487 (94%), Gaps = 2/487 (0%)
Strand=Plus/Plus
Query 132 gagagagagagaAAGAAATGGCGACATCGGGAACGTACGTGACGGAGGTTCCGTTGAAAG 191
|||||||||||||| |||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 7 GAGAGAGAGAGAAATAAATGGCGACGTCGGGAACATACGTGACGGAGGTTCCATTGAAAG 66
Query 192 GATCGGCGGAGAAACACTACAAGAGCTGGAAGAGCGAGAACCATGTCTTCGCTGACGCCA 251
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct 67 GATCGGCGGAGAAACACTACAAGAGCTGGAAAAGCGAGAACCATGTCTTCCCTGACACCA 126
Query 252 TTGGCCACCACATCCAAAATGTCGTTGTTCACGAAGGCGAACATGACTCTCACGGGTCTA 311
| ||||| |||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 127 TCGGCCAACACATCCATAACGTCGTTGTTCACGAAGGCGAACATGACGCTCACGGGTCTA 186
Query 312 TCAGGAGTTGGGACTACACATATGATGGAAAGAAGGAGATGTTCAAAGAGAAGAGAGAGA 371
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 187 TCAGGAGTTGGGACTACACATATGATGGAAAGAAGGAGACGTTCAAAGAGAAGAGAGAGA 246
Query 372 TAGATGATGAGAATAAAACATTGACGAAAAGAGGACTGGATGGTCACGTGATGGAGCATC 431
||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| |
Sbjct 247 TAGATGACGAGAATAAAACATTGACGAAAAGAGGACTGGAGGGTCACCCGATGGAGCACC 306
Query 432 TCAAAGTATTTGATATCATCTACGAATTTATTCCCAAATCTGAGGATAGCTGCGTCTGCA 491
||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 307 TCAAAGTGTTTGATGTCATTTACCAATTTATTCCCAAATCTGAGGATAGCTGCGTCTGCA 366
Query 492 AAATCACTATGATATGGGAGAAGCGCAACGATGACTTTCCCGAACCAAGCGGCTACATGA 551
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 AACTCACTATGCTATGGGAGAAGCGCAACGATGACTTTCCCGAACCAAGCGGCTACATGA 426
Query 552 AATTCGTCAAGCAAATGGTTGTTGACATTGAAGGCCACGTCAACAAAGCTTAACCA-CAA 610
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 427 AATTCGTCAAGCAAATGGTTGTTGACATTGAAGGCCACGTCAGCAAAGCTTAACCATCAT 486
Query 611 CCATCAC 617
|| ||||
Sbjct 487 CC-TCAC 492
> Ahg492500 jgi|Araly1|492500|fgenesh2_kg.7__1933__AT4G23680.1
Length=747
Score = 652 bits (353), Expect = 0.0
Identities = 596/708 (84%), Gaps = 37/708 (5%)
Strand=Plus/Plus
Query 109 AAAACAAGTAGAAACTTTAAAACg--agagagagagaAAGAAATGGCGACATCGGGAACG 166
||||||||| ||| |||||||||| ||| |||||| ||||||||||||| |||||||||
Sbjct 25 AAAACAAGTGGAAGCTTTAAAACGAAAGAAAGAGAGCAAGAAATGGCGACGTCGGGAACG 84
Query 167 TACGTGACGGAGGTTCCGTTGAAAGGATCGGCGGAGAAACACTACAAGAGCTGGAAGAGC 226
|||||||||||||||||||| |||||||| || |||||||| |||||||| ||||||| |
Sbjct 85 TACGTGACGGAGGTTCCGTTAAAAGGATCAGCCGAGAAACATTACAAGAGGTGGAAGAAC 144
Query 227 GAGAACCATGTCTTCGCTGACGCCATTGGCCACCACATCCAAAATGTCGTTGTTCACGAA 286
||||||||||| ||| |||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 145 GAGAACCATGTATTCCCTGACGCCATCGGCCACCACATCCAAGATGTCATTGTTCACGAA 204
Query 287 GGCGAACATGACTCTCACGGGTCTATCAGGAGTTGGGACTACACATATGATGGAAAGAAG 346
|||||||||||||||||||| ||||||||||||||| ||||||| | ||||||||| ||
Sbjct 205 GGCGAACATGACTCTCACGGCTCTATCAGGAGTTGGAACTACACTTGGGATGGAAAGGAG 264
Query 347 GAGATGTTCAAAGAGAAG-AGAGAGATAGATGATGAGAATAAAACATTGACGA-AAAGAG 404
||| ||||||| ||| || |||||||||||||||||||||||||||||||| | |||||
Sbjct 265 GAGGTGTTCAAGGAG-AGAAGAGAGATAGATGATGAGAATAAAACATTGAC-ATTAAGAG 322
Query 405 GACTGGATGGTCACGTGATGGAGCATCTCAAAGTATTTGATATCATCTACGAATTTATTC 464
|||| || ||||||||||||||||| |||||||| |||||| |||| ||| |||||||||
Sbjct 323 GACTTGAGGGTCACGTGATGGAGCAGCTCAAAGTGTTTGATGTCATTTACCAATTTATTC 382
Query 465 CCAAATCTGAGGATAGCTGCGTCTGCAAAATCACTATGATATGGGAGAAGCGCAACGATG 524
||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 383 CCAAATCTGAGGATAGCTGCGTCTGCAAACTCACTTTAATATGGGAGAAGCGCAACGATG 442
Query 525 ACTTTCCCGAACCAAGCGGCTACATGAAATTCGTCAAGCAAAT-GGTTGTTGACATTGAA 583
| | ||||||||||||||||||||||||||||||||| | | ||||| |||||| |||
Sbjct 443 AGTCCCCCGAACCAAGCGGCTACATGAAATTCGTCAAG-AGCTTGGTTGCTGACATGGAA 501
Query 584 GGCCACGTCAACAAAGCTTAACCA-CAA-CC-A---TCACCGTCATCACTATCT-CGATC 636
| ||||||| |||| ||||| || || || | |||| |||||||| |||| | |||
Sbjct 502 GAACACGTCATCAAAACTTAATCATCATTCCCACGGTCACAGTCATCACCATCTTC-ATC 560
Query 637 GAT-ATTGT-ATTATTATGG-TGTCTT--TTC-GATAAT---CAATATAATAAAGGGGGT 687
|| || | | ||| | | | | || || | | | || ||||||||| |||||
Sbjct 561 -ATCATCATCACTATC-TCGATTTATTACTTAAGGTGTTTTTCAGTATAATAAATGGGGT 618
Query 688 CTTGTGGAGTTTC-T-ATT-CTCTGTA--ACTGTTTGGTTTTGGAATATGCTGTGATATG 742
|||||||| |||| | ||| || ||| || |||||||| || || ||||| ||||||
Sbjct 619 CTTGTGGAATTTCATCATTTCTATGTGTTACCGTTTGGTTATGTAAGATGCTTTGATATA 678
Query 743 TTGTTATGCTCAT---CATATATC-GGTTTCGATATAATGAGTATTAA 786
||||||||||||| |||||||| |||| ||||||| ||| | ||||
Sbjct 679 TTGTTATGCTCATGATCATATATCAGGTT-CGATATAGTGATTCTTAA 725
> Ahg484409 jgi|Araly1|484409|fgenesh2_kg.5__401__AT3G26460.1
Length=549
Score = 394 bits (213), Expect = 6e-109
Identities = 393/478 (82%), Gaps = 19/478 (4%)
Strand=Plus/Plus
Query 138 gagagaAAGAAATGGCGACATCGGGAACGTACGTGACGGAGGTTCCGTTGAAAGGATCGG 197
|||||||||||||||| || ||||| || |||||||||||||| |||||||||||| |||
Sbjct 1 GAGAGAAAGAAATGGCTACGTCGGGGACATACGTGACGGAGGTACCGTTGAAAGGAACGG 60
Query 198 CGGAGAAACACTACAAGAGCTGGAAGAGCGAGAACCATGTCTTCGCTGACGCCATTGGCC 257
|||||||||||| |||||| |||| || |||||||||| ||||| |||||||| | || |
Sbjct 61 CGGAGAAACACTTCAAGAGGTGGAGGAACGAGAACCATCTCTTCCCTGACGCCGTCGGTC 120
Query 258 ACCACATCCAAAATGTCGTTGTTCACGAAGGCGAACATGACTCTCACGG-GTCTATCAGG 316
||||||||||| ||| ||||||||| |||||| ||| ||||||| | | |||| |
Sbjct 121 ACCACATCCAAGGTGTTACTGTTCACGATGGCGAATGGGACACTCACGGAGGC-ATCAAG 179
Query 317 AGTTGGGACTACACA-T---ATGATGGAAAGAAGGAGATGTTCAAAGAGAAGAGAGAGAT 372
| |||| |||||||| | | ||||||| | ||||| | ||||| |||| |||||||||
Sbjct 180 ATTTGGAACTACACATTGGGA-GATGGAACGCAGGAGGTATTCAAGGAGAGGAGAGAGAT 238
Query 373 AGATGATGAGAATAAAACATTGACGAAAAG-AGGACTGGATGGTCACGTGATGGAGCATC 431
|| || |||| ||| ||| ||| | | ||||||||| ||||||||||||||||| |
Sbjct 239 GGACGACGAGAGTAACACAATGAAG-GTTGTAGGACTGGAAGGTCACGTGATGGAGCAGC 297
Query 432 TCAAAGTATTTGATATC-ATCTACGAATTTATTCCCAAATCTGAGGATAG-CTGCGTCTG 489
|||| || | ||| || || | | ||||||||||||| ||||| ||| | ||||||||
Sbjct 298 TCAAGGTGTATGAGGTCGAT-TTCCAATTTATTCCCAAGTCTGAAGAT-GATTGCGTCTG 355
Query 490 CAAAATCACTATGATATGGGAGAAGCGCAACGATGACTTTCCC-GAACCAAGCGGCTACA 548
|||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||
Sbjct 356 CAAAATCACTATGATATGGGAGAAGCGCAACGATGA-TTTCCCCGAACCAAGCAGCTACA 414
Query 549 TGAAATTCGTCAAGCAA-ATGGTTGTTGACATTGAAGG-CCACGTCAACAAAGCTTAA 604
|| || || ||||| | |||||||||||||| || || ||||||| |||||||||
Sbjct 415 TGCAACTCCTCAAG-AGCATGGTTGTTGACATGGA-GGACCACGTCCTTAAAGCTTAA 470
> Ahg935860 jgi|Araly1|935860|scaffold_500051.1
Length=499
Score = 257 bits (139), Expect = 8e-68
Identities = 337/432 (78%), Gaps = 16/432 (4%)
Strand=Plus/Plus
Query 139 agagaAAGAAATGGCGACATCGGGAACGTACGTGACGGAGGTTCCGTTGAAAGGATCGGC 198
||||| ||| |||||||| || ||||| || |||||||||||||| ||||||||||||||
Sbjct 13 AGAGAGAGAGATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCGGC 72
Query 199 GGAGAAACACTACAAGAGCTGGAAGAGCGAGAACCATGTCTTCGCTGACGCCATTGGCCA 258
|||||||||||||||| | |||| ||| |||||||| ||||| | || ||| | |||||
Sbjct 73 GGAGAAACACTACAAGCGGTGGAGGAGTGAGAACCACCTCTTCCCCGATGCCGTCGGCCA 132
Query 259 CCACATCCAAAATGTCGTTGTTCACGAAGGCGAACATGACTCTCACGG-GTCTATCAGGA 317
|||||||||| |||| | ||||| |||||| ||||| || || | | |||| ||
Sbjct 133 CCACATCCAAGGTGTCACCATCCACGACGGCGAATGGGACTCCCATGGAGCC-ATCAAGA 191
Query 318 GTTGGGACTACACATATGATGG-AAAGAAGGAGATGTTCAAAGAGAAGAGAGAGATAGAT 376
|||| ||||||||| ||||| ||| |||| ||||||| |||| ||||||||||||
Sbjct 192 TTTGGAACTACACATGCGATGGGAAACC-GGAGGTGTTCAAGGAGAGGAGAGAGATAGAC 250
Query 377 GATGAGAATAAAACATTGACGAAA-AGAGGACTGGATGGTCACGTGATGGAGCATCTCAA 435
|| ||||||| | | || | |||||||| || ||||||||||||||||| || ||
Sbjct 251 GACGAGAATATGGCGGTAAC-ATTCAGAGGACTAGAAGGTCACGTGATGGAGCAGCTTAA 309
Query 436 AGTATTTGATATCATCTA-CGAATTTATTCCCAAA-TC---TGAGGATAGCTGCGTCTGC 490
||| | ||| |||||| | | || |||| ||| || ||| |||| | | ||||
Sbjct 310 AGTGTATGACGTCATCTTTC-AGTTCATTCA-AAAGTCCCCTGATGATA--T-CATCTGT 364
Query 491 AAAATCACTATGATATGGGAGAAGCGCAACGATGACTTTCCCGAACCAAGCGGCTACATG 550
|| ||||||||||| |||||||||| ||||||||| | || || || ||| |||||||
Sbjct 365 AAGATCACTATGATCTGGGAGAAGCAAAACGATGACATGCCTGAGCCTAGCAACTACATG 424
Query 551 AAATTCGTCAAG 562
|| |||||||||
Sbjct 425 AAGTTCGTCAAG 436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32976323205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5