BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23680.1
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492500 jgi|Araly1|492500|fgenesh2_kg.7__1933__AT4G23680.1 983 0.0
> Ahg492500 jgi|Araly1|492500|fgenesh2_kg.7__1933__AT4G23680.1
Length=747
Score = 983 bits (532), Expect = 0.0
Identities = 680/751 (91%), Gaps = 12/751 (2%)
Strand=Plus/Plus
Query 2 TCATCAACcaaaacaaaacata-aaaaacaagtggaagctttaaaacgagagggagagag 60
|||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1 TCATCAACCAAAACAAAACATACAAAAACAAGTGGAAGCTTTAAAACGAAAGAAAGAGAG 60
Query 61 caa-aaaTGGCGACGTCGGGAACGTACGTGACGGAAGTTCCGCTAAAAGGATCGGCCGAG 119
||| ||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 61 CAAGAAATGGCGACGTCGGGAACGTACGTGACGGAGGTTCCGTTAAAAGGATCAGCCGAG 120
Query 120 AAATACTACAAGAGGTGGAAGAACGAGAACCATGTCTTCCCTGATGCTATCGGCCACCAC 179
||| | ||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 121 AAACATTACAAGAGGTGGAAGAACGAGAACCATGTATTCCCTGACGCCATCGGCCACCAC 180
Query 180 ATCCAAAATGTTACCGTTCACGAAGGCGAACATGACTCTCACGGGTCTATCAGGAGTTGG 239
|||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 ATCCAAGATGTCATTGTTCACGAAGGCGAACATGACTCTCACGGCTCTATCAGGAGTTGG 240
Query 240 AACTACACATGGGATGGAAAGGAGGAGGTGTTCAAGGAGAGAAGAGAGATAGACGATGAG 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 AACTACACTTGGGATGGAAAGGAGGAGGTGTTCAAGGAGAGAAGAGAGATAGATGATGAG 300
Query 300 ACCAAAACGTTGACGTTAAGAGGACTTGAGGGTCACGTGATGGAGCAGCTCAAAGTGTAC 359
| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATAAAACATTGACATTAAGAGGACTTGAGGGTCACGTGATGGAGCAGCTCAAAGTGTTT 360
Query 360 GACGTCGTCTACCAATTCATTCCCAAATCTGAGGATACCTGCATCGGCAAAATCACTTTA 419
|| ||| | |||||||| ||||||||||||||||||| |||| || ||||| ||||||||
Sbjct 361 GATGTCATTTACCAATTTATTCCCAAATCTGAGGATAGCTGCGTCTGCAAACTCACTTTA 420
Query 420 ATATGGGAGAAGCGCAACGATGATTCCCCAGAACCAAGCGGGTACATGAAATTCGTCAAG 479
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 421 ATATGGGAGAAGCGCAACGATGAGTCCCCCGAACCAAGCGGCTACATGAAATTCGTCAAG 480
Query 480 AGCTTGGTTGCTGACATGGGA-AACCACGTTAGCAAAACTTAATCATCATTCCCACAGTC 538
||||||||||||||||||| | ||| |||| | ||||||||||||||||||||||| |||
Sbjct 481 AGCTTGGTTGCTGACATGGAAGAAC-ACGTCATCAAAACTTAATCATCATTCCCACGGTC 539
Query 539 GTC-GTCGtcatcatcatcatcatcatcatcaCTATCTCGATTTATAAGTTATGATGTTT 597
| ||| ||| |||| ||||||||||||||||||||||||||||| | ||| | |||||
Sbjct 540 A-CAGTCATCACCATCTTCATCATCATCATCACTATCTCGATTTATTACTTAAGGTGTTT 598
Query 598 T-CAGTATAATAAATGGGGTCTTGTGGA-T--CGTTAATTTCTATGTGTAAACCGTTTGG 653
| |||||||||||||||||||||||||| | | | | ||||||||||| | ||||||||
Sbjct 599 TTCAGTATAATAAATGGGGTCTTGTGGAATTTCATCA-TTTCTATGTGTTA-CCGTTTGG 656
Query 654 TTCTGTATGATGCTTCGATATATTGTTATGTTCATGATCATATGTCGGGTTCGATATAAT 713
|| |||| ||||||| |||||||||||||| |||||||||||| || ||||||||||| |
Sbjct 657 TTATGTAAGATGCTTTGATATATTGTTATGCTCATGATCATATATCAGGTTCGATATAGT 716
Query 714 GATTCTTAAGATTAATTTACTACACATTTCA 744
||||||||||| ||||||||||||| |||||
Sbjct 717 GATTCTTAAGAATAATTTACTACACGTTTCA 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27677237742
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5