BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23690.1
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945741 jgi|Araly1|945741|scaffold_701970.1 929 0.0
> Ahg945741 jgi|Araly1|945741|scaffold_701970.1
Length=605
Score = 929 bits (503), Expect = 0.0
Identities = 577/612 (94%), Gaps = 8/612 (1%)
Strand=Plus/Plus
Query 13 TCACTAATCTCTAGCTAACCATGGCATTTCTAGTAGAGAAACAACTCTTCAAAGCCCTCT 72
|||||| |||||||||||| ||||||| |||||||| ||||||||||||||| ||||||
Sbjct 1 TCACTAGTCTCTAGCTAACAATGGCATCTCTAGTAGTTAAACAACTCTTCAAATCCCTCT 60
Query 73 TCTCATTCTTCTTATTAGTTTTACTCTTCTCCGATACCGTCTTATCTTTCCGAAAAACAA 132
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 61 TCTCATTCTTCTTATTAGTTTTACTCTTCTCCGATACCGTCCTATCGTTCCGAAAAACAC 120
Query 133 TCGA-CCAGAAAAAACCCTGCAAACACTTCTCGTTCTATTTCCATGACATCCTCTACGAT 191
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGATCC-GAAAAAACCCTGCAAACACTTCTCGTTCTATTTCCATGACATCCTCTACGAT 179
Query 192 GGCGACAATGTAGCAAACGCAACCTCCGCCGCCATCGTGAGCCCTCCAGGACTAGGAAAC 251
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 GGCGACAATGTAGCAAACGCAACCTCCGCCGCCATCGTGAGCCCTCCTGGACTAGGAAAC 239
Query 252 TTCAAGTTCGGTAAGTTTGTGATCTTTGATGGGCCCATAACAATGGACAAGAACTATCTC 311
|||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 240 TTCAAGTTTGGTAAGTTTGTGATCTTCGATGACCCCATAACAATGGACAAGAACTATCTC 299
Query 312 TCAAAACCCGTGGCTCGCGCACAAGGCTTCTATTTCTATGACATGAAGATGGACTTCAAT 371
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCAAAACCCCTGGCTCGGGCACAAGGCTTCTATTTCTATGACATGAAGATGGACTTCAAT 359
Query 372 TCGTGGTTTTCCTACACGTTGGTGTTTAACTCAACGGAACACAAAGGGACATTGAACATA 431
||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 360 GCGTGGTTTTGCTACACGTTGGTGTTTAACTCAACGGAATACAAGGGGACATTGAACATA 419
Query 432 ATGGGTGCTGATTTGATGATGGAGCCAACAAGAGATCTATCGGTCGTTGGTGGGACAGGT 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATGGGTGCTGATTTGATGATGGAGCCAACAAGAGATCTATCGGTCGTTGGTGGGACAGGT 479
Query 492 GACTTCTTCATGGCTCGTGGGATCGCTACCTTCGTGACTGATTTATTTCAAGGGGCTAAG 551
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 480 GACTTCTTCATGGCTCGTGGGATCGCTACCTTCGTGACGGATATATTTCAAGGGGCTAAG 539
Query 552 TATTTCCGAGTTAAGATGGATATTAAGCTCTATGAATGTTACTAAGTAGCTAAGAATGTG 611
|||||| |||| |||||||||||||||||||||||||||||||| | | ||| ||| ||
Sbjct 540 TATTTCAGAGTCAAGATGGATATTAAGCTCTATGAATGTTACTA-G-A--TAATAATATG 595
Query 612 TGTTTTGTTTGA 623
| ||| ||||||
Sbjct 596 T-TTT-GTTTGA 605
Score = 100 bits (54), Expect = 1e-20
Identities = 82/94 (87%), Gaps = 8/94 (9%)
Strand=Plus/Plus
Query 724 GATTTATTTCAAGGGGATAAGTATTTCCGAGTTAAGATGGATATTAAGCTCTATGAATGT 783
||| |||||||||||| |||||||||| |||| |||||||||||||||||||||||||||
Sbjct 519 GATATATTTCAAGGGGCTAAGTATTTCAGAGTCAAGATGGATATTAAGCTCTATGAATGT 578
Query 784 TACTA-ACTAGCGAATAATATTTGTTTTGTTTGA 816
||||| | || | |||||| |||||||||||
Sbjct 579 TACTAGA-TA---A-TAATAT--GTTTTGTTTGA 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32480725284
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5