BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23700.1
Length=2732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492497 jgi|Araly1|492497|fgenesh2_kg.7__1930__AT4G23700.1 3928 0.0
> Ahg492497 jgi|Araly1|492497|fgenesh2_kg.7__1930__AT4G23700.1
Length=2663
Score = 3928 bits (2127), Expect = 0.0
Identities = 2476/2646 (94%), Gaps = 18/2646 (1%)
Strand=Plus/Plus
Query 85 AAATCAATCGATTTAGATCGGATAATCATCTCCGTCCCGATATAATCTGCGTTTTCAGAT 144
||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||
Sbjct 21 AAATCAATCGAGTTAGATCGGAGAATCATCTCAGTCCCGATATAATCTGCGTTTTTAGAT 80
Query 145 ATTAATCCATCTTT-AAA-GCATGGGAACAAACGGTACAACATGTCCAGGACCAATGAAA 202
||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 81 ATTTATCCATCTTTAAAAGGCATGGGAACAAACGGGACAACATGTCCAGGACCAATGAAA 140
Query 203 GCAACCTCTAATGGAGTCTTTCAAGGAGAGAATCCTCTGGAACACGCGTTGCCTCTTCTC 262
||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 141 GCAACCTCTAATGGAGTGTTCCAAGGAGAGAATCCTCTGGATCACGCGTTGCCTCTTCTG 200
Query 263 ATACTCCAGATCTGTATCGTTCTTCTTCTCACTCGTCTTCTTGCTTTTCTCCTCCGTCCT 322
||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 201 ATACTTCAGATCTGTATTGTTCTTCTGCTCACTCGTCTTCTTGCTTTTCTCCTTCGTCCT 260
Query 323 CTCCGGCAGCCACGTGTCATCGCCGAGATTGTCGGTGGAATATTACTTGGACCATCAGCA 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CTCCGGCAGCCACGTGTCATCGCCGAGATTGTCGGTGGAATATTACTTGGACCATCAGCA 320
Query 383 CTTGGGAAAAGCACTAAGTTTATCAACACAGTTTTCCCACCAAAGAGTCTAACGGTTTTA 442
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CTTGGGAAAAGCTCAAAGTTTATCAACACAGTTTTCCCACCAAAGAGTCTAACGGTTTTA 380
Query 443 GACACACTTGCAAACTTAGGACTCATCTTCTTCCTCTTCCTCGTTGGTCTCGAGCTCGAT 502
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 381 GACACACTTGCAAACTTAGGACTCATCTTCTTCCTATTCCTCGTTGGTCTCGAGCTCGAT 440
Query 503 CCCAAATCTCTTAAGCGAACCGGAAAGAGAGCTCTCTCTATCGCTCTCGCCGGAATCACT 562
|||||||| || |||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 441 CCCAAATCCCTCAAGCGAACCGGAAAAAGAGCTCTCTCGATTGCTCTCGCCGGAATCACT 500
Query 563 CTTCCTTTCGTATTAGGCATTGGAACTTCTTTTGCTCTCCGCAGTTCCATAGCTGATGGA 622
|| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 501 CTCCCTTTTATATTAGGCATTGGAACATCTTTTGCTCTCCGCAGTTCCATAGCTGATGGA 560
Query 623 GCCAGCAAAGCTCCTTTCCTTGTCTTCATGGGTGTTGCTCTCTCCATCACAGCGTTTCCC 682
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 561 GCCAGCAAAGCTCCTTTCCTTGTCTTCATGGGTGTTGCTCTCTCCATCACCGCTTTTCCC 620
Query 683 GTCTTGGCCCGAATACTCGCTGAGATTAAGCTTCTAACCACTGATATCGGAAAGATTGCT 742
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 621 GTCTTGGCTCGAATACTCGCTGAGATCAAGCTTCTAACCACTGATATCGGAAAGATTGCT 680
Query 743 TTGTCCGCTGCTGCGGTCAATGACGTGGCTGCTTGGATTCTCCTTGCTCTCGCGGTGGCT 802
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 681 TTGTCGGCTGCTGCAGTCAATGACGTGGCTGCTTGGATTCTCCTTGCTCTAGCGGTGGCT 740
Query 803 CTTTCTGGAGAGGGGAGCTCTCCGCTTACTTCTCTTTGGGTGTTTCTCTCGGGTTGCGGT 862
|| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 741 CTCTCTGGAGAGGGGAGCTCTCCGCTAACATCTCTCTGGGTGTTTCTCTCGGGTTGCGGT 800
Query 863 TTTGTCTTGTTCTGTATCTTTGTTGTGCAACCAGGGATTAAGTTGATTGCTAAACGTTGC 922
|| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 801 TTCGTCCTGTTCTGTATCTTTGTTGTGCAACCGGGGATTAAGTTGATTGCTAAACGTTGT 860
Query 923 CCTGAAGGAGAACCGGTAAATGAACTTTACGTGTGTTGCACGTTAGGTATTGTTCTTGCA 982
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 CCTGAAGGAGAACCAATAAATGAACTTTACGTGTGTTGCACGTTAGGTATTGTTCTTGCA 920
Query 983 GCTAGCTTCGTCACAGACTTTATTGGGATTCATGCGCTGTTTGGTGCTTTTGTGATCGGG 1042
|||||||||||||| ||||| |||||||| || ||||| || ||||| |||||||| |||
Sbjct 921 GCTAGCTTCGTCACGGACTTGATTGGGATCCACGCGCTATTCGGTGCGTTTGTGATTGGG 980
Query 1043 GTTATTTTCCCTAAAGAAGGCAATTTCGCGAATGCTTTAGTTGAGAAAGTTGAGGATCTC 1102
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 981 GTTATTTTCCCTAAAGAAGGCAATTTCGCGAATGCTCTGGTTGAGAAAGTTGAGGATCTC 1040
Query 1103 GTGTCAGGTCTTTTCTTGCCGCTCTACTTCGTCTCAAGTGGTTTAAAGACCAATGTTGCG 1162
||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||
Sbjct 1041 GTGTCAGGTCTTTTCTTGCCGCTCTACTTCGTCTCAAGTGGTTTAAAAACGGATGTGGCG 1100
Query 1163 ACGATCCAAGGAGCTCAGTCTTGGGGACTCTTGGTTTTGGTTATATTTAATGCTTGTTTC 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 ACGATCCAAGGAGCTCAGTCTTGGGGACTCTTGGTTTTGGTTATATTTAATGCTTGTTTC 1160
Query 1223 GGTAAAATCATCGGTACAGTCCTAGTTTCCCTTTACTGCAAAGTTCCGCTTGACCAGTCT 1282
||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1161 GGTAAAATCGTCGGTACAGTCCTAGTTTCTCTTTACTGCAAAGTTCCACTTGACCAGTCT 1220
Query 1283 TTAGCGCTTGGTTTCTTGATGAACACGAAAGGTCTTGTTGAGCTCATCGTCCTCAACATT 1342
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1221 TTAGCGCTTGGTTTCTTGATGAACACGAAAGGCCTTGTTGAGCTCATCGTCCTCAACATC 1280
Query 1343 GGTAAAGACAGAGGGGT---TCTGAATGATCAAATTTTCGCTATAATGGTTCTAATGGCG 1399
||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct 1281 GGTAAAGACAGAGGGGTAAGTCTGAACGATCAAGTTTTCGCTATAATGGTTCTAATGGCG 1340
Query 1400 ATATTCACCACATTCATGACGACTCCTCTAGTTCTGGCAGTGTACAAACCGGGTAAATCC 1459
|| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1341 ATTTTCACCACGTTCATGACGACTCCTCTAGTTCTAGCGGTGTACAAACCGGGTAAATCT 1400
Query 1460 TTAACCAAAGCTGATTATAAGAACCGAACGGTGGAGGAGACGAACCGTTCAAACAAACCG 1519
|||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1401 TTAACCAAAGGTGATTACAAGAACCGAACGGTGGAGGAGACGAACCGGTCAAACAAACCG 1460
Query 1520 CTCTGCCTCATGTTCTGTTTCCAGAGCATAATGAACATCCCCACGATCGTCAACCTCATA 1579
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 CTCTGTCTCATGTTCTGTTTCCAGAGCATAATGAACATCCCCACGATCGTCAACCTCATA 1520
Query 1580 GAAGCATCCCGAGGCATAAACCGTAAAGAAAATCTATCAGTCTACGCGATGCATCTTATG 1639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 GAAGCATCCCGAGGCATAAACCGTAAAGAAAATCTATCAGTCTACGCGATGCATCTTATG 1580
Query 1640 GAGCTTTCAGAGAGATCATCGGCTATACTCATGGCACACAAGGTCAGGAGAAACGGTCTT 1699
|||||||| ||||||||||| |||||||||||||||||||||||| | |||||||| |||
Sbjct 1581 GAGCTTTCGGAGAGATCATCCGCTATACTCATGGCACACAAGGTCCGAAGAAACGGCCTT 1640
Query 1700 CCCTTCTGGAACAAAGACAAATCTGAGAACAATAGTTCTTCTTCCGACATGGTTGTGGTC 1759
|| |||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1641 CCTTTCTGGAACAAAGACAAAACAGGGAACAATAGTTCTTCTTCCGACATGGTTGTGGTT 1700
Query 1760 GCATTCGAGGCTTTCCGAAGACTCAGCCGTGTCTCAGTGCGTCCCATGACAGCGATCTCA 1819
||||| || |||||||| |||| || ||||||||||| ||||||||||| || ||||||
Sbjct 1701 GCATTTGAAGCTTTCCGGCGACTTAGTCGTGTCTCAGTACGTCCCATGACGGCTATCTCA 1760
Query 1820 CCGATGGCGACTATACATGAGGATATTTGCCAAAGCGCGGAACGCaaaaaaaCCGCTATG 1879
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1761 CCAATGGCGACTATACATGAGGATATTTGCCAAAGCGCCGAACGCAAAAAAACCGCTATG 1820
Query 1880 GTGATTCTTCCGTTTCATAAGCACGTTAGGCTGGACAGAACATGGGAGACGACTAGGAAT 1939
||||||||||||||||| |||||||||||| |||||||||| |||||||||||| | ||
Sbjct 1821 GTGATTCTTCCGTTTCACAAGCACGTTAGGTTGGACAGAACGTGGGAGACGACTCGAAAC 1880
Query 1940 GACTACCGTTGGATTAACAAGAAGGTTATGGAGGAATCTCCATGTTCTGTTGCGATTTTG 1999
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1881 GATTACCGTTGGATTAACAAGAAGGTTATGGAGGAATCTCCATGTTCTGTTGCAATTCTG 1940
Query 2000 GTTGATCGTGGACTTGGTGGTACGACACGTGTCGCGTCTAGTGATTTCTCGTTGACTATA 2059
||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1941 GTTGATCGTGGGCTTGGTGGTACGACTCGTGTCGCGTCTAGTGATTTCTCGTTGGCTATA 2000
Query 2060 ACAGTTTTGTTTTTTGGAGGGAATGATGATCGTGAGGCGTTAGCGTTTGCGGTGCGAATG 2119
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2001 ACGGTTTTGTTTTTTGGAGGGAATGATGATCGCGAGGCGTTAGCGTTTGCGGTGCGAATG 2060
Query 2120 GCTGAACATCCCGGGATAAGCTTAACCGTTGTTCGGTTTATCCCTAGCGATGAATTCAAA 2179
|| |||||||||||||||| ||||||||||||||||||||| |||||||| ||||| |||
Sbjct 2061 GCGGAACATCCCGGGATAACCTTAACCGTTGTTCGGTTTATTCCTAGCGAGGAATTTAAA 2120
Query 2180 CCGGAAAACGTGA-GGATCGAGATAACCGAAGATCAGCTCTGTTCAGGGGCAACTAGATT 2238
||||||||||||| || ||||||||| |||||||||| || ||||||||| ||| |||||
Sbjct 2121 CCGGAAAACGTGAAGG-TCGAGATAATCGAAGATCAGGTCGGTTCAGGGGAAACCAGATT 2179
Query 2239 GATTGATATTGAAGCTATAACCGAACTTAAAGCAAAGATTAAAGAAAAAGAAAGTTCTCG 2298
||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 2180 GATTGATATTGAAGCTATAACCGAACTTAAAGCAAAGATAAAAGAACAAGAAAGCTCTCG 2239
Query 2299 TTCTAATTCGGATTCTGAATCTCATA-TCATTTACGAAGAGAAAATCGTGAAATGTTACG 2357
||||||||||||||| ||||||| || || |||||||||||||||||||| |||||||||
Sbjct 2240 TTCTAATTCGGATTCGGAATCTC-TAATCGTTTACGAAGAGAAAATCGTGCAATGTTACG 2298
Query 2358 AGGAAGTTATCGAAGTTATTAAAGAGTATTCTAAAAGCAACCTTTTCTTGGTGGGGAAGT 2417
||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 2299 AGGAAGTTATCGAGGTTATTAATGAGTATTCTAGAAGTAACCTTTTCTTGGTGGGGAAGT 2358
Query 2418 CACCGGAAGGTTCT-GTAGCGTCAGGGATAAAC--G-TAAGAAGCGACACGCCTGAGCTT 2473
|||||||||||| | || ||||||||| ||||| | ||||||| ||||| || ||||||
Sbjct 2359 CACCGGAAGGTT-TAGTGGCGTCAGGGGTAAACTTGGTAAGAAGTGACACACCGGAGCTT 2417
Query 2474 GGACCGATCGGGAATTTGTTAACGGAAAGCGAAAGTGTTTCGACGGTGGCATCAGTGTTG 2533
||||||||||||||||||||||||| |||||||||| ||||||| ||||| ||||| |||
Sbjct 2418 GGACCGATCGGGAATTTGTTAACGGCAAGCGAAAGTATTTCGACTGTGGCGTCAGTATTG 2477
Query 2534 GTGGTGCAACAGTATATAGCAAGCCGTCCGGTCG--G-AATTTCGAAGAACGTCACGACT 2590
|||||||||||||| | | ||||||||||||||| | |||||||||||||||||||| |
Sbjct 2478 GTGGTGCAACAGTACACATCAAGCCGTCCGGTCGTTGGAATTTCGAAGAACGTCACGATT 2537
Query 2591 GAAGAGTCGCTGGTTGAGGATTCTGAGAGTCCTTAGTGAATTTTCTATTTGGGATTCCAA 2650
||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||| |
Sbjct 2538 GAAGAGTCGCTGGTTGAGGATTCAGAGAGTCCTTAATGAATTTTATCTTTGGGATTCCGA 2597
Query 2651 GACTCG-AAAGGTCAAAAGATTGGCTTGTATAATAACATGTGTTTCATATTGTAAATAAT 2709
|||| | ||||||||||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct 2598 GACTTGCAAAGGTCAAAAGATTGGTTTGTATAATAACGTTTGTTTCATATTGTAAATAAT 2657
Query 2710 AATTGC 2715
|| |||
Sbjct 2658 AACTGC 2663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103072202970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5