BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23710.1
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492496 jgi|Araly1|492496|fgenesh2_kg.7__1929__AT4G23710.1 640 0.0
> Ahg492496 jgi|Araly1|492496|fgenesh2_kg.7__1929__AT4G23710.1
Length=524
Score = 640 bits (346), Expect = 0.0
Identities = 432/472 (92%), Gaps = 11/472 (2%)
Strand=Plus/Plus
Query 36 TCTCCGGTCTTCTCTGTCTCTCTGTCCATTTTCGTGGCGAAGAAGATTTTTTAAGG-TCT 94
||||||| | |||||||||||||||||| ||||||| | ||||||| ||||| ||| | |
Sbjct 1 TCTCCGGCCATCTCTGTCTCTCTGTCCACTTTCGTGCCAAAGAAGA-TTTTTGAGGATTT 59
Query 95 TTTCAAGAAATTATGGAATCTGCAGGGATCCAGCAACTGCTTGCTGCTGAACGTGAAGCT 154
|||||||||| ||||||||| |||||||||||||||||||||| ||||||| ||||||
Sbjct 60 TTTCAAGAAAATATGGAATCCACAGGGATCCAGCAACTGCTTGCCGCTGAACACGAAGCT 119
Query 155 CAGCAAATTGTCAATGCCGCTAGGACCGCAAAAATGACTAGACTGAAGCAAGCCAAGGAA 214
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 CAGCAAATTGTCAATGCCGCTAGGACCGCAAAAATGACCAGACTGAAGCAAGCCAAGGAA 179
Query 215 GAAGCTGAAACAGAGGTTGCTGAGCACAAAACCAGTACAGAGCAGGGGTTCCAGAGGAAA 274
||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 GAAGCTGAATCAGAGGTTTCTGAGCACAAAACCAGTACAGAGCAGGGTTTCCAGAGGAAA 239
Query 275 CTCGAAGCGACAAGTGGAGATTCAGGTGCAAACGTGAAGAGGCTTGAGCAAGAGACTGAT 334
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| |
Sbjct 240 CTCGAAGCGACAAGTGGAGATTCAGGGGCAAACGTTAAGAGGCTTGAACAAGAGACTAAC 299
Query 335 GCCAAAATCGAGCAATTGAAGAACGAAGCTACGAGAATTTCCAAAGATGTTGTGGATATG 394
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 GCCAAAATCGAGCAATTGAAGAACGAAGCTTCGAGAATTTCCAAAGATGTTGTGGATATG 359
Query 395 CTTCTGAAAAATGTGACCACAGTGAACAACTGAGTATAATATCTCAAGGAAACCATCAAC 454
|||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 360 CTTCTGAAAAATGTGACCACAGTGAACAACTGAGTATA-T--CACAAGGAAACCATCAAC 416
Query 455 TGTAAAATGGTGTGATAT-TTTC-----AGTGGATACGTTCATTCCTTTCTT 500
||| ||| ||||||| || ||| ||||||| ||||||||||||||||
Sbjct 417 TGTTAAACGGTGTGACATGTTTTTTTTGAGTGGATTCGTTCATTCCTTTCTT 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25618600224
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5