BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23720.1
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492495 jgi|Araly1|492495|fgenesh2_kg.7__1928__AT4G23720.1 1500 0.0
> Ahg492495 jgi|Araly1|492495|fgenesh2_kg.7__1928__AT4G23720.1
Length=1100
Score = 1500 bits (812), Expect = 0.0
Identities = 1011/1105 (91%), Gaps = 21/1105 (2%)
Strand=Plus/Plus
Query 9 aaaaaaaaaaCACTAAAGAGAAACATGAACTCAAAGTCTCTCACTTGCTGTGTTGTGTTC 68
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAAAAAATAACACGAAAGAGAAACATGAACTCAAAGTCTCTCATTTGCTGTGTTGTGTTC 60
Query 69 TTACTACATACCAGTTTGTTTTCTTCTACATTACAATCCTCTCTTATCCACTTGAACTCC 128
|||||||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 61 TTACTACACACCATTTTGTTTTCTTCTACATCACAATCCTCTCTTATCCACTTCAACTCC 120
Query 129 ACAACATCAATCCTTAATGTCACTTTACCACATTCCTTGTCTCAAT-CCTTAGAGAATTT 187
||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||
Sbjct 121 ACAACGTCAATCCTTAATGTCACTTTACCACATTCCTTGTCTCAATCCCTT-GAGGATTT 179
Query 188 CGCCCTCAAGACGTTAACCACTCAACATCATACCGGTGCACTATACCGAGCTATCTTACC 247
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 180 CGCCCTCAAGACGTTAACCACTCAACATCATACCGGTGCACTATACCGGGCCATCTTACC 239
Query 248 GGAAAATCTCTCCGGCATCGAAGTCTCTGTCGTCCGTCTCACCGGGAAGAGTCTTTGGAA 307
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 240 GGAAAATCTTTCCGGCATCGAAGTGTCTGTCGTCCGTCTCACCGGGAAGAGCCTTTGGAA 299
Query 308 CTCCGGGGCCAAGTTCAGCAACGTGCTTATTCCGGAAAGGTCAGTTTCGGTTCCTCCTGC 367
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTCCGGGGCCAAGTTCAGCAGCGTGCTTATTCCGGAAAGGTCAGTTTCGGTTCCTCCTGC 359
Query 368 TAGGAGAGTCGTTATAGTATACCAAAATCTAGGGAATTGGTCTAACCATTGGTATACCGT 427
|||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAGGAGAGTCGCTATTGTGTACCAAAATCTAGGGAATTGGTCTAACCATTGGTATACCGT 419
Query 428 ACCTGGTTACCGGTTAATCACTTCTGTCTTAGGGTTTAAGGTATTGGATGTGTCGGATCA 487
||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 420 ACCCGGTTACCGATTAATCACTTCTGTCTTAGGGTTTAAGGTATTGGACGTGTCAGATCA 479
Query 488 AGACAATGTTAAAGAAATAATTCTAAAGATGAAGAATCCTGTAGAGGTTTCGTTTAGGGA 547
||||||||| ||||| || | ||||| |||||| |||||||||||||||||||||| |||
Sbjct 480 AGACAATGTCAAAGAGATTAGTCTAAGGATGAAAAATCCTGTAGAGGTTTCGTTTATGGA 539
Query 548 TCTACCTAAAGAGAGGGATGAGGAAATGCTGTCTAGGGTAAGATGCGTGAGTTTCAAGGC 607
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTACCTAAAGAGACAGATGAAGAAATGCTGTCTAGGGTAAGATGCGTGAGTTTCAAGGC 599
Query 608 ACAGACCAAAGATGAGGAAGCGACTCATATAAGCCGAATGGTTATCCCGGGTGTGTGTTA 667
|||||| |||||||| ||| | ||||||||||||||||||| | ||||| ||||||||
Sbjct 600 ACAGACGGAAGATGAGAAAGTAATTCATATAAGCCGAATGGTTCTTCCGGGCGTGTGTTA 659
Query 668 TGGTTCGAGCCATGGGGATTATTCGGTGATCGAGCCTTTGGAGAACGATAAGAAGAATGT 727
||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 660 CGGTTCTAGCCATGGGGATTATTCGGTGGTCGAGCCCTTGGAGAATGATAAGAAGAATGT 719
Query 728 TGAGTCGTGGTCCACCTGGTGGTGGTTGTGGATCGTGGGATTTGTATT-AGGATTCGGTT 786
|||||||||| |||||||||||||||||||||||||||||| | || |||||| ||
Sbjct 720 CGAGTCGTGGTGGACCTGGTGGTGGTTGTGGATCGTGGGATTTAT-TTCAGGATTTGGCG 778
Query 787 TATTAGGGTTT-T-TG-T----GT--ACAATGGGGATAAGGGTTTCAAGAGCGAAGAAGA 837
| ||||||||| | || | || ||||||||||||||||||||||||||||||||||
Sbjct 779 TGTTAGGGTTTCTCTGGTTTTTGTGGACAATGGGGATAAGGGTTTCAAGAGCGAAGAAGA 838
Query 838 TTCAAGTGATGATGGAGAGAGACGCTAATGATGGTGAAGTGTTTGAGAGCAGATGGTTTG 897
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 839 TTCAAGTGATGATGGAGAGAGACGCTGATGATGGTGAAATGTTTGAGAGCAGATGGATTG 898
Query 898 GTGGAAGTAAAATGCCATCTGCAGCTGTAACCAGAACTTTACCAGAGCTC-GAATCCGGG 956
|||||||||||||||| |||||||||||||||||||| |||||||||| | ||||| ||
Sbjct 899 GTGGAAGTAAAATGCCTTCTGCAGCTGTAACCAGAACCTTACCAGAGC-CAGAATCAGGA 957
Query 957 TTCGAAAGGGTCTCTTAGATAAATGGTTGGGTC-TTACTTGGT-TCAAACTTGAAAATTA 1014
||||||||||||| |||||||| || |||| || |||||| | | ||| ||||||||||
Sbjct 958 TTCGAAAGGGTCTTTTAGATAATTGATTGG-TCCTTACTTCATCTAAAA-TTGAAAATTA 1015
Query 1015 CTCCTTATAAAAATATGTAGTCATC--ACTTAATATAGTATAGAAAAAGCTTTTACTTTA 1072
||||| || ||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 1016 CTCCTGATCAAAATATGTAGTCATATTACTTAATATAGTATAGAAAAAACTTTTACGTTA 1075
Query 1073 GTCCTAGCTGGGAAGCTTTGAATCC 1097
|||||||||||||||||||||||||
Sbjct 1076 GTCCTAGCTGGGAAGCTTTGAATCC 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44146337886
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5