BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23730.1
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945737 jgi|Araly1|945737|scaffold_701966.1 1528 0.0
> Ahg945737 jgi|Araly1|945737|scaffold_701966.1
Length=961
Score = 1528 bits (827), Expect = 0.0
Identities = 918/962 (95%), Gaps = 5/962 (1%)
Strand=Plus/Plus
Query 452 GTCTCTGAATCTGT-TTTTGAATGGAACCATCATCTGGAACCGGTCCTGAGAAGAGACCA 510
|||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1 GTCTCTGAATCTGTGTTTT-AATGGAACCATCATCTGGAGTCGGTCCTGAGAAGAGACCA 59
Query 511 ACCGTTGACTTGGTCAAGGATAGAAATGGAACGGATCAGATTCTTCTTCAGAATCCTAGA 570
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
Sbjct 60 ACCGTTGACTTGGTCAAGGATAAAAATGGAACCGATCAGATTCTTCTTCAGAATCCTAAA 119
Query 571 GGCGCCTCTGTAAAGATTAGTTTACATGGAGGACAAGTTCTTTCATGGAAGACTGACAAG 630
||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 120 GGCGCTTCTGTCAAGATTAGTTTACATGGAGGACAAGTTCTTTCTTGGAAGACTGAGAAG 179
Query 631 GGTGATGAATTGTTATTCAACAGCACCAAGGCCAACTTGAAGCCTCCCCATCCGGTACGA 690
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 180 GGTGATGAATTGTTATTCACCAGCACCAAGGCCAACTTGAAGCCTCCCTATCCGGTACGA 239
Query 691 GGAGGAATCCCTATATGCTTTCCTCAGTTTGGAACTCGGGGATCACTTGAGCAACACGGG 750
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 GGAGGAATCCCTATATGCTTTCCTCAGTTTGGAACTCGAGGATCACTTGAGCAACACGGT 299
Query 751 TTTGCAAGAAACAAGATGTGGCTTGTAGAAAACAATCCACCTGCTTTACCTTCATTTGAC 810
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 TTTGCAAGAAACAAGATGTGGCTTGTGGAAAACAATCCACCTGCTTTACCTTCATTTGAC 359
Query 811 TCAACTGGAAAAGCCTATGTTGATTTGGTGCTTAAGTCATCTGATGAAGATACGATGAGG 870
| || || ||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 360 CCTACCGGCAAAGCCTATGTCGATTTGGTACTTAAGTCATCTGATGAAGACACGATGAGG 419
Query 871 ATCTGGCCTTACAGCTTTGAGTTTCATCTGAGAGTCTCATTGGCATTAGATGGGAACCTA 930
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 420 ATCTGGCCTTACAGCTTTGAGTTTCATCTTAGAGTCTCATTGGCGTTAGATGGAAACCTA 479
Query 931 ACACTGATATCACGAGTCAGAAACATCAATTCAAAGCCTTTTAGCTTTTCCATTGCTTAC 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACACTGATATCACGAGTCAGAAACATCAATTCAAAGCCTTTTAGCTTTTCCATTGCTTAC 539
Query 991 CACACTTACTTCTCCATTTCCGATATTAGTGAAGTTAGACTTGAAGGGCTGGAAACTCTT 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CACACTTACTTCTCCATTTCCGATATTAGTGAAGTTAGACTTGAAGGGCTGGAAACTCTT 599
Query 1051 GACTATCTTGATAA-TATGCATGATAGAGAGCGGTTCACAGAGCAAGGCGATGCATTAAC 1109
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GACTATCTTGATAACT-TGCATGATAGAGAGCGGTTCACAGAGCAAGGCGATGCATTAAC 658
Query 1110 CTTTGAATCAGAGATCGATAGAGTGTACCTAAATTCTAAAGACGTGGTTGCCATTTTCGA 1169
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 659 CTTTGAATCCGAGATCGATAGAGTGTACCTAAATTCTAAAGACGTGGTTGCTGTTTTCGA 718
Query 1170 CCATGAGAGAAAACGCACATTCCTCATCAAGAAAGAAGGTCTACCTGATGTCGTGGTATG 1229
|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 719 CCATGAAAGAAAACGTACATTCCTCATCAAGAAAGAAGGTCTACCTGATGTTGTGGTATG 778
Query 1230 GAATCCATGGGAGAAGAAAGCGAGAGCATTGACGGATTTGGGAGATGATGAGTATAGACA 1289
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 779 GAATCCATGGGAGAAGAAAGCGAGAGCATTGACGGATTTGGGAGATGATGAGTATAAACA 838
Query 1290 CATGTTGTGTGTGGATGGAGCAGCCATTGAGAAACCCATCACCTTGAAACCGGGTGAAGA 1349
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 839 CATGTTGTGTGTTGATGGAGCAGCCATTGAGAAACCAATCACATTGAAACCGGGTGAAGA 898
Query 1350 ATGGACCGGGAAATTACATCTCTCGCTTGTTCTTTCCACCT-AAAACCCGGTACCGGTTA 1408
||||||||| |||||| | || ||||||||||||||||||| |||| |||||||||||||
Sbjct 899 ATGGACCGGTAAATTAAACCTTTCGCTTGTTCTTTCCACCTGAAAAACCGGTACCGGTTA 958
Query 1409 TC 1410
||
Sbjct 959 TC 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63686889640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5