BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23740.1
Length=2390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945736 jgi|Araly1|945736|scaffold_701965.1 2946 0.0
> Ahg945736 jgi|Araly1|945736|scaffold_701965.1
Length=1958
Score = 2946 bits (1595), Expect = 0.0
Identities = 1852/1974 (94%), Gaps = 26/1974 (1%)
Strand=Plus/Plus
Query 271 CTCGtttttttCACTTTCaaaaaaaTGGAAGCTTTGAGGATTTATCTATGGAGTCTCTGT 330
||||||||||| |||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 1 CTCGTTTTTTT-ACTTTC-AAAAAATGGAAGCTTTGAGGATTTATCTATGGA-----T-T 52
Query 331 CTCTCTCTGTGTTTGATTATCTATGGAGCAAACTCAGATCCATTAGAAGACAAACGCGCA 390
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 CTCTATCTGTGTTTGATTATCTATGGAGCAAACTCAGATCCATTAGAAGACAAACGCGCA 112
Query 391 TTGCTTGAGTTTCTTACCATTATGCAACCAACTCGTTCACTCAACTGGAACGAGACTTCT 450
||||||||||||||||||||||||| || || |||||||| ||||||||||||||||||
Sbjct 113 TTGCTTGAGTTTCTTACCATTATGCGTCCGACACGTTCACTGAACTGGAACGAGACTTCT 172
Query 451 CAAGTCTGCAACATCTGGACCGGAGTTACTTGTAATCAAGACGGATCTCGAATCATAGCC 510
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 173 CAAGTCTGCAACATCTGGACCGGGGTTACTTGCAATCAAGACGGATCTCGAATCATAGCC 232
Query 511 GTTAGATTACCAGGCGTTGGACTCAATGGTCAGATTCCTCCAAACACTATAAGCAGACTC 570
|||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 233 GTTAGATTACCAGGGGTTGGGCTCAATGGTCAGATTCCTCCCAATACTATAAGCAGACTC 292
Query 571 TCAGCTCTCAGAGTTCTTAGTCTCAGATCCAATCTAATCTCCGGCGAGTTTCCTA-AGGA 629
|| | |||||||||||||||||||||||||||||||||| |||| | |||||| | |||
Sbjct 293 TCTGGTCTCAGAGTTCTTAGTCTCAGATCCAATCTAATCACCGGTGTGTTTCC-AGCGGA 351
Query 630 TTTTGTTGAGTTGAAAGATTTGGCCTTTCTTTATCTTCAGGATAACAACTTGTCTGGTCC 689
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 352 TTTTGTTGAGTTGAAAGATTTGGCCTTTCTTTATCTTCAAGACAACAAATTGTCTGGTCC 411
Query 690 TTTGCCATTGGATTTCTCTGTTTGGAAGAATCTCACTAGTGTTAATCTCTCAAACAACGG 749
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 412 TTTGCCTTTGGATTTCTCTGTTTGGAAGAATCTCACTAGTGTTAATCTTTCGAACAACGG 471
Query 750 GTTCAACGGGACAATCCC-GAGTTCGTTGTCTCGTCTTAAGCGGATTCAGTCGTTAAATC 808
|||||||||||||||||| || ||||||| | ||||||| ||||||||||||||| ||||
Sbjct 472 GTTCAACGGGACAATCCCGGA-TTCGTTGCCCCGTCTTAGGCGGATTCAGTCGTTGAATC 530
Query 809 TTGCTAACAATACGCTTTCTGGTGATATTCCTGATCTGAGTGTGCTCTCTAGTCTGCAGC 868
||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| |
Sbjct 531 TTGCTAACAATTCGCTTTCTGGTGATATTCCGGATCTGAGTGTGGTCTCTAGTCTGCAAC 590
Query 869 ACATTGACTTGTCCAACAATTATGATCTTGCTGGACCGATACCAGATTGGCTTCGAAGGT 928
|||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| |
Sbjct 591 ACATTGACTTGTCCAACAATTATGATCTGGATGGACCGATACCGGATTGGCTTCGAAGAT 650
Query 929 TCCCGTTCTCGTCTTATACAGGCATTGATATTATTCCTCCTGGTGGTAACTACACCCTCG 988
||||||| || |||||| ||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 651 TCCCGTTGTCTTCTTATGCAGGCATCGATATTATTCCTCCTGGTGGTAACTACTCCCTCG 710
Query 989 TT-ACGCCGCCACCACCTAGCGAGCAGACTCATCAGAAACCGTCGAAAGCTCGCTTCTTG 1047
|| | ||||||||||||| || ||||||||||||||||| | ||||||||| |||||||
Sbjct 711 TTGA-GCCGCCACCACCTCGCAAGCAGACTCATCAGAAA-C--CGAAAGCTCACTTCTTG 766
Query 1048 GGACTATCCGAGACGGTGTTCTTGTTGATTGTTATTGCTGTTTCCATTGTGGTGA-TTAC 1106
||||||||||||||||| ||||||||||||||||| |||||||||||||| || | || |
Sbjct 767 GGACTATCCGAGACGGTTTTCTTGTTGATTGTTATAGCTGTTTCCATTGTAGT-AGTTGC 825
Query 1107 GGCTTTGGCGTTTGTGTTGACTGTTTGTTACGTAAGAAGGAAGTTAAGACGCGGTGATGG 1166
||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 826 GGCTTTGGCGTTTTTGTTGACTGTTTGTTACGTAAGAAGGAATTTAAGACACGGTGATGG 885
Query 1167 GGTCATTTCGGATAATAAGTTGCAGAAGAAAGGTGGGATGTCTCCTGAGAAATTTGTTTC 1226
||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||
Sbjct 886 GGTCATTTCGGATAATAAGCTGCAGAAGAAAGGCGGGATGTCTCCAGAGAAATTCGTTTC 945
Query 1227 TCGGATGGAAGATGTGAACAACCGGTTATCGTTCTTTGAAGGATGTAACTACTCTTTTGA 1286
||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 946 GCGGATGGAAGATGTGAACAACCGGTTATCGTTCTTCGAAGGATGCAACTACTCGTTTGA 1005
Query 1287 TCTTGAGGATCTATTGAGAGCTTCTGCTGAGGTTCTTGGTAAAGGCACGTTTGGCACGAC 1346
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1006 TCTTGAGGATCTATTGAGAGCTTCTGCTGAGGTTCTTGGTAAGGGCACGTTTGGCACGAC 1065
Query 1347 GTACAAAGCAGTTCTTGAAGATGCAACTTCTGTTGCTGTGAAACGTCTTAAGGATGTTGC 1406
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1066 GTACAAAGCTGTTCTTGAAGATGCAACTTCTGTTGCTGTGAAACGGCTTAAGGATGTTGC 1125
Query 1407 GGCTGGGAAACGTGATTTCGAGCAGCAGATGGAGATCATTGGAGGTATTAAGCATGAAAA 1466
|||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1126 GGCTGGTAAACGAGATTTCGAGCAGCAGATGGAGATCATCGGAGGTATTAAGCACGAAAA 1185
Query 1467 CGTTGTGGAGCTTAAGGCATACTATTACTCTAAAGACGAGAAGCTAATGGTTTATGACTA 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 CGTTGTGGAGCTTAAGGCATACTATTACTCTAAAGACGAGAAGCTAATGGTTTATGACTA 1245
Query 1527 TTTCAGCCGAGGAAGTGTGGCTTCTTTGCTTCATGGTAACAGAGGAGAAAACAGGATTCC 1586
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1246 TTTCAGCCGAGGAAGTGTGGCTTCTTTGCTTCATGGTAATAGAGGAGAAAACCGGATTCC 1305
Query 1587 TCTAGACTGGGAAACAAGAATGAAAATAGCTATTGGCGCAGCTAAAGGGATTGCTCGTAT 1646
| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1306 TTTAGACTGGGAAACCAGAATGAAAATCGCGATTGGCGCAGCTAAAGGGATTGCTCGTAT 1365
Query 1647 CCACAAAGAAAACAATGGAAAACTCGTCCATGGGAACATCAAATCTTCGAATATATTCTT 1706
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1366 CCATAAAGAAAACAATGGAAAACTCGTCCATGGAAACATCAAATCTTCGAATATATTCTT 1425
Query 1707 GAATTCCGAGAGTAATGGCTGTGTCTCTGATCTTGGATTAACTGCTGTAATGAGTCCCTT 1766
||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1426 GAATTCCGAGAATAATGGCTGTGTCTCTGATCTCGGATTAACCGCTGTAATGAGCCCCTT 1485
Query 1767 GGCTCCACCGATATCGAGGCAAGCTGGTTACCGTGCACCAGAAGTAACCGACACAAGGAA 1826
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 GGCTCCACCAATATCGAGGCAAGCTGGTTACCGTGCACCAGAAGTAACCGACACAAGGAA 1545
Query 1827 GTCTTCTCAATTGTCAGATGTTTACAGCTTCGGTGTTGTTCTACTCGAACTACTCACGGG 1886
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 1546 GTCTTCTCAATTGTCAGATGTTTACAGCTTCGGCGTCGTTCTACTCGAACTACTCACCGG 1605
Query 1887 AAAATCGCCCATTCACACTACCGCAGGGGACGAGATCATCCACTTGGTTAGATGGGTACA 1946
|||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1606 AAAATCGCCCATTCACACAACCGCAGGGGACGAGATCATTCACTTGGTTCGATGGGTACA 1665
Query 1947 TTCAGTAGTGAGAGAGGAATGGACCGCAGAAGTATTCGACATCGAGCTTCTGAGGTATAC 2006
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1666 TTCGGTAGTGAGAGAGGAATGGACCGCAGAAGTATTCGACATAGAGCTTCTGAGGTATAC 1725
Query 2007 AAACATAGAGGAAGAGATGGTTGAGATGTTGCAGATTGCAATGTCCTGTGTTGTGAAAGC 2066
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1726 AAACATAGAGGAAGAGATGGTTGAGATGTTGCAGATTGCAATGTCATGTGTTGTGAAAGC 1785
Query 2067 AGCAGATCAGAGGCCAAAGATGTCTGATTTGGTTAGGCTCATCGAGAACGTTGGAAACCG 2126
|||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1786 AGCAGACCAGAGGCCGAAGATGTCTGATTTGGTTAGGCTCATCGAGAAGGTAGGAAACCG 1845
Query 2127 ACGAACCAGCATTGAACC-G-----GAACCCGAACTCAAACCCAAATCCGAAAATGGAGC 2180
|||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 1846 ACGAACCAGCATTGAACCTGAACCTGAACCCGAACTCAAACCCAAATCTGAAAATGGAGC 1905
Query 2181 CTCAGAGACTTCAACACCGAGTGAAATTTGAATCTATCAAAATTCTAACTGTTG 2234
|||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1906 CTCAGAGAGTTCCACACCGAGTGAAATTTGAATCTATCAAA-TTCAAACTGTTG 1958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90045339180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5