BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23750.1
Length=1831
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492491 jgi|Araly1|492491|fgenesh2_kg.7__1924__AT4G23750.1 2239 0.0
> Ahg492491 jgi|Araly1|492491|fgenesh2_kg.7__1924__AT4G23750.1
Length=1657
Score = 2239 bits (1212), Expect = 0.0
Identities = 1542/1693 (91%), Gaps = 55/1693 (3%)
Strand=Plus/Plus
Query 1 CTGCCGCTTTTAAATCTCTCATCTTCTTCCTCGTGTCACTCTTTCTCTCACACTCTGCAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 CTGCCGCTTTTAAATCTCTCATCTTCTTCCTCGTGTCACTCTTTCTCTCACACTCTGC-A 59
Query 61 AAACATTTTCTTGTCTCTCCTCTGCCCAAAttttttttCTTTCCAGGAATATTTCCTAGA 120
||||||||||||| ||| ||||||||||| ||||| | |||||||||||||| ||||||
Sbjct 60 AAACATTTTCTTG--TCT-CTCTGCCCAAA-TTTTTAT-TTTCCAGGAATATTACCTAGA 114
Query 121 AAAACCCAAGCAAAGC-TTTAACCCCTTCCTCCTCCAAAAGTAGCAtcttcctctttttc 179
|||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 115 AAAACCCAAGCAAAGCTTTTAATCCCTTCCTCCCCCAAAAGTAGCATCTTCCTCTTTTTT 174
Query 180 tatttctcctttcctcttcttatctctctctcGTTTGTGAACGATTCCTTAAGAATATAA 239
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TTTTTCTCCTTTCCTCTCCTTATCTCTCTCTCGTTTGTGAACGATTCCTTAAGAATATAA 234
Query 240 CCAAAAGCCCTTTTCTCCTTTCTTCAACTTTCCGGGAAAAATCTTCACGCAGCAAGGTTT 299
| |||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 235 CTAAAAGCTCTTTTCCCCTTTCTTCAACTTTCCGGG-AAAATCTTCACGCAGCAAGGTTT 293
Query 300 CTCTCTCGGCTCTCGCAGTGTTTTTCGTGCCTTTT-GTTCTTTCTATaaaaaaaaaaTTC 358
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 294 CTC-CT---CTCTCGCAGTGTTTTTCGTGCCTTTTAGTTCTTTCTATAAAAAAAAAATTC 349
Query 359 GCGTCCTTTAAGAAAACTTTTTCCACCTAGAGAAGAAGAAGAGTATCACTCTTGTTGTTC 418
||||||||| |||||||||||| || ||||||||||||| |||||
Sbjct 350 GCGTCCTTTGAGAAAACTTTTTTTTCC--------------AGTATCACTCTTGCTGTTC 395
Query 419 AAGTTTCTCTCTTTAATAAAAAATCCATCTTTATTCTTTGTCTTCTTTCCTTTTTGCTTT 478
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 396 AAGTTTCT-TCTTT--TAAAAAATTTATCTTTATTCTTTGTCTTCTTTCCTTTTTGCTTT 452
Query 479 CCCTAATCTCTATGTTATAAACACACAGAGAGAAACAAAGTCACAGTCTCGAG-TCAAAA 537
||| ||||||||||||||||||||||| |||||||| ||||||||||| ||| | ||||
Sbjct 453 CCCCAATCTCTATGTTATAAACACACACAGAGAAAC--AGTCACAGTCTTGAGTTAAAAA 510
Query 538 ACAGAGA-ATACGAAAGAAAAATGGAAGCGGAGAAGAAAATGGTTCTACCGAGAATCAAA 596
| | | | | | |||| |||||||||||||||||||||||||||| |||||||||| |||
Sbjct 511 AAAAACAGAGA-GAAA-AAAAATGGAAGCGGAGAAGAAAATGGTTTTACCGAGAATTAAA 568
Query 597 TTCACAGAGCACAAAACCAACACGACAACAATCGTATCGGAGTTAACCAACACTCACCAA 656
|||||||||||||||||||||||||| ||||||||| |||| |||||||||| |||||||
Sbjct 569 TTCACAGAGCACAAAACCAACACGACGACAATCGTACCGGATTTAACCAACAATCACCAA 628
Query 657 ACCAGGATTCTTCGTATCTCAGTCACTGACCCAGACGCTACTGATTCCTCCAGTGACGAC 716
|||||| |||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 629 ACCAGGGTTCTTCGTATTTCAGTCACTGACCCAGACGCTACTGATTCCTCAAGCGACGAC 688
Query 717 GAAGAAGAAGAACATCAACGCTTTGTCTCTAAACGCCGTCGTGTTAAGAAGTTTGTCAAC 776
|||||||||||||||||||| || |||||||||||||||||| | || ||||| ||||||
Sbjct 689 GAAGAAGAAGAACATCAACGGTTCGTCTCTAAACGCCGTCGTATCAAAAAGTTCGTCAAC 748
Query 777 GAAGTCTATCTCGATTCCGGTGCTGTTGTTACTGGTAGTTGTGGTCAAATGGAGTCGAAG 836
|| ||| ||||||| | |||| | |||| ||||||||||| |||||||||| || |||
Sbjct 749 GAGGTCGCTCTCGATGCTGGTG--G-TGTTGCTGGTAGTTGTAGTCAAATGGAATCAAAG 805
Query 837 AAGAGACAAAAGAGAGCGGTTAAATCGGAGTCTACTGTTTCTCCGGTTGTTTCAGCGACG 896
||||||| |||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 806 AAGAGACGGAAGAGAGCTGTGAAATCGGAGTCTGCTGTTTCTCCGGTTGTTTCAGCGACG 865
Query 897 ACGACTACGACG-GGA--GAGAAGAAGTTCCGAGGAGTGAGACAGCGTCCATGGGGAAAA 953
||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 ACGACGACGACGACGACGGAGAAGAAGTTCCGAGGAGTGAGACAGCGTCCATGGGGAAAA 925
Query 954 TGGGCGGCGGAGATAAGAGATCCGTTGAAACGTGTACGGCTCTGGTTAGGTACTTACAAC 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 TGGGCGGCGGAGATAAGAGATCCGTTGAAACGTGTACGGCTCTGGTTAGGTACTTACAAC 985
Query 1014 ACGGCGGAAGAAGCTGCTATGGTTTACGATAACGCCGCTATTCAGCTTCGTGGTCCCGAC 1073
|| |||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct 986 ACCGCGGAAGAAGCTGCCATGGTTTACGATAACGCTGCGATTCAGCTTCGTGGTCCAGAC 1045
Query 1074 GCTCTGACTAATTTCTCAGTCACTCCGACAACAGCGACGGAGAAGAAAGCCCCACCACCG 1133
||||| ||||||||||| || |||||||| || | || ||||| ||| ||||||||||
Sbjct 1046 GCTCTCACTAATTTCTCCGTTACTCCGACGAC-G--ACTGAGAAAAAACCCCCACCACCT 1102
Query 1134 TCTCCGGTgaagaagaagaagaa-gaaaaacaacaaaagcaaaaaaTCCGTTACTGCTTC 1192
|||||||||||||||||||| || || ||| | |||||||| |||||||||||
Sbjct 1103 TCTCCGGTGAAGAAGAAGAA-AACGAG---CAA-AGTT--AAAAAATCTGTTACTGCTTC 1155
Query 1193 TTCCTCCATCAGCAGAAGCAGCAGCAACGATTGTCTCTGCTCTCCGGTGTCTGTTCTCCG 1252
||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 1156 TTCCTCCATCAGCAGAAGCAGTAGCAACGACTGTCTCTGCTCTCCGGTGTCTGTACTCCG 1215
Query 1253 ATCTCCTTTCGCCGTCGACGAATTCTCCGGCATTTCTTCATCACCAGTC-GCGGCCGTTG 1311
||||||||||||||||||||| |||||||||||||||||| ||||| | ||||| ||||
Sbjct 1216 ATCTCCTTTCGCCGTCGACGAGTTCTCCGGCATTTCTTCACCACCAC-CAGCGGCTGTTG 1274
Query 1312 TAGTCAAGGAAGAGCCATCCATGACAACGGTATCTGAAACTTTCTCTGATTTCTCGGCGC 1371
||||||||||||||||||| ||||| || || || || |||||||| |||||||||||||
Sbjct 1275 TAGTCAAGGAAGAGCCATCGATGACGACTGTCTCAGAGACTTTCTCAGATTTCTCGGCGC 1334
Query 1372 CCTTGTTCTCAGATGATGACGTGTTCGATTTCCGGAGCTCAGTGGTTCCCGACTATCTCG 1431
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1335 CGTTGTTCTCAGATGATGACGTGTTCGATTTCCGGAGCTCAGTGGTTCCCGACTACCTCG 1394
Query 1432 GCGGCGATTTATTTGGGGAAGATCTATTCACGGCGGATATGTGTACGGATATGAACTTCG 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 GCGGCGATTTATTTGGGGAAGATCTATTCACGGCGGATATGTGTACGGATATGAACTTCG 1454
Query 1492 GATTCGATTTCGGATCCGGATTATCCAGCTGGCACATGGAGGACCATTTTCAAGATATCG 1551
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1455 GATTCGATTTCGGATCCGGATTATCCAGCTGGCACTTGGAAGACCATTTTCAAGATATCG 1514
Query 1552 GGGATCTATTCGGGTCGGATCCTCTTTTAGCTGTTTAATAATATTTTAAATAAATAAATA 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 GGGATCTATTCGGGTCGGATCCTCTTTTAGCTGTTTAATAATATTTTAAATAAATAAATA 1574
Query 1612 GTTATACCGGCCGTTACTAAACGGAACCGGAGAAAGTTTTGTATACCGGTGACATAAAAT 1671
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1575 GTTTTACCGGCCGTTACTAAACGGAACCGGAGAAAGTTTTGTATACCGGTGAAATATAAT 1634
Query 1672 CTCGGTTATGTTC 1684
|||||||||||||
Sbjct 1635 CTCGGTTATGTTC 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68752892225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5